Wall clock time and date at job start Wed Apr 1 2020 04:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47311 * 2 1 4 4 H 1.09001 * 109.47319 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.46977 * 299.93844 * 3 2 1 6 6 H 1.08001 * 119.99679 * 115.90023 * 5 3 2 7 7 C 1.37876 * 120.00160 * 295.89760 * 5 3 2 8 8 N 1.31517 * 120.00087 * 353.48284 * 7 5 3 9 9 Si 1.86803 * 119.99995 * 173.47703 * 7 5 3 10 10 H 1.48499 * 109.46937 * 180.02562 * 9 7 5 11 11 H 1.48496 * 109.47097 * 300.00296 * 9 7 5 12 12 H 1.48504 * 109.46989 * 60.00475 * 9 7 5 13 13 N 1.46500 * 109.47063 * 59.93981 * 3 2 1 14 14 S 1.65599 * 119.99793 * 95.70751 * 13 3 2 15 15 O 1.42103 * 106.39763 * 178.00207 * 14 13 3 16 16 O 1.42099 * 106.40129 * 310.92060 * 14 13 3 17 17 C 1.76193 * 107.22148 * 64.46188 * 14 13 3 18 18 C 1.38479 * 119.82423 * 89.99956 * 17 14 13 19 19 C 1.37837 * 120.22461 * 179.97438 * 18 17 14 20 20 C 1.39716 * 119.87386 * 0.02562 * 19 18 17 21 21 C 1.47563 * 120.17485 * 179.97438 * 20 19 18 22 22 O 1.21487 * 119.99949 * 180.02562 * 21 20 19 23 23 O 1.34734 * 119.99822 * 359.97438 * 21 20 19 24 24 C 1.45197 * 116.99890 * 180.02562 * 23 21 20 25 25 C 1.39881 * 119.65409 * 0.02562 * 20 19 18 26 26 F 1.35105 * 120.11384 * 179.97438 * 25 20 19 27 27 C 1.38206 * 119.82600 * 269.72500 * 17 14 13 28 28 H 1.08997 * 109.47110 * 305.00616 * 1 2 3 29 29 H 1.09006 * 109.46711 * 65.00787 * 1 2 3 30 30 H 1.09000 * 109.47183 * 185.00655 * 1 2 3 31 31 H 1.09006 * 109.47518 * 239.99523 * 2 1 3 32 32 H 1.09000 * 109.47375 * 120.00020 * 2 1 3 33 33 H 0.96997 * 119.99861 * 355.00990 * 8 7 5 34 34 H 0.96998 * 119.99375 * 275.70291 * 13 3 2 35 35 H 1.08000 * 119.88511 * 359.97438 * 18 17 14 36 36 H 1.07995 * 120.05989 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.46715 * 180.02562 * 24 23 21 38 38 H 1.08996 * 109.47536 * 300.00150 * 24 23 21 39 39 H 1.08992 * 109.46991 * 60.00724 * 24 23 21 40 40 H 1.07999 * 119.93731 * 359.97438 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0005 5 6 1.5389 2.1524 -1.2312 6 1 0.8645 2.9904 -1.1345 7 6 1.9416 1.7323 -2.4812 8 7 2.8598 0.7978 -2.5967 9 14 1.1827 2.4902 -4.0106 10 1 1.7817 1.8700 -5.2197 11 1 -0.2829 2.2511 -4.0066 12 1 1.4458 3.9517 -4.0215 13 7 1.5505 2.1335 1.1954 14 16 2.5056 2.2311 2.5447 15 8 1.7762 2.9912 3.4984 16 8 2.9789 0.9153 2.7973 17 6 3.9175 3.1940 2.1159 18 6 3.8913 4.5681 2.2852 19 6 4.9914 5.3293 1.9529 20 6 6.1364 4.7121 1.4430 21 6 7.3176 5.5206 1.0846 22 8 8.3114 4.9806 0.6410 23 8 7.2936 6.8577 1.2483 24 6 8.4907 7.5892 0.8742 25 6 6.1568 3.3238 1.2731 26 9 7.2590 2.7173 0.7803 27 6 5.0473 2.5732 1.6176 28 1 -0.3633 0.5895 0.8417 29 1 -0.3633 0.4342 -0.9315 30 1 -0.3633 -1.0237 0.0897 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.3056 0.4556 -1.8061 34 1 0.6670 2.5338 1.1965 35 1 3.0059 5.0450 2.6790 36 1 4.9682 6.4007 2.0865 37 1 8.3381 8.6531 1.0560 38 1 9.3330 7.2364 1.4693 39 1 8.6998 7.4274 -0.1832 40 1 5.0622 1.5006 1.4928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277805704.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:58 Heat of formation + Delta-G solvation = -201.132852 kcal Electronic energy + Delta-G solvation = -28787.856496 eV Core-core repulsion = 24415.624126 eV Total energy + Delta-G solvation = -4372.232370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.29766 -41.78282 -40.01317 -38.57681 -38.00543 -37.71161 -37.04171 -34.18536 -33.33886 -32.16937 -32.01719 -28.87340 -27.79461 -25.99495 -25.62493 -24.27465 -22.57457 -21.97680 -20.74824 -19.58353 -19.46150 -19.11288 -18.48689 -18.30146 -17.73506 -17.65921 -17.19105 -16.85302 -16.64807 -15.87285 -15.73351 -15.45367 -15.23689 -15.01235 -14.85494 -14.64975 -14.57020 -14.49381 -14.11358 -13.81318 -13.39624 -13.30352 -13.21888 -13.17193 -12.93300 -12.89289 -12.60713 -12.40642 -12.20289 -12.05675 -11.95917 -11.93525 -11.81858 -11.69193 -10.94248 -10.84291 -10.42430 -10.21614 -10.08652 -8.50517 -6.25666 -1.24996 -0.67362 -0.24024 0.94674 1.31063 1.60560 1.65449 1.83386 1.89076 2.12346 2.62841 2.63199 2.67180 3.08546 3.25805 3.33182 3.48905 3.67244 3.81758 4.11993 4.22501 4.25603 4.28074 4.36013 4.47315 4.57946 4.61882 4.63033 4.66504 4.70857 4.72709 5.02159 5.10870 5.29070 5.30978 5.37511 5.57025 5.62810 5.92112 6.24690 6.35322 6.41241 6.65262 7.49923 8.85309 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010359 B = 0.004356 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.287009 B = 6426.372681 C = 7883.704792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.141 4.141 3 C 0.269 3.731 4 H 0.016 0.984 5 C -0.596 4.596 6 H 0.066 0.934 7 C -0.018 4.018 8 N -0.934 5.934 9 Si 1.102 2.898 10 H -0.295 1.295 11 H -0.269 1.269 12 H -0.274 1.274 13 N -1.086 6.086 14 S 2.708 3.292 15 O -0.968 6.968 16 O -0.981 6.981 17 C -0.619 4.619 18 C -0.038 4.038 19 C -0.035 4.035 20 C -0.125 4.125 21 C 0.510 3.490 22 O -0.519 6.519 23 O -0.342 6.342 24 C 0.028 3.972 25 C 0.123 3.877 26 F -0.126 7.126 27 C -0.076 4.076 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.043 0.957 33 H 0.261 0.739 34 H 0.423 0.577 35 H 0.188 0.812 36 H 0.199 0.801 37 H 0.145 0.855 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.093 13.660 9.563 16.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.181 4.181 3 C 0.163 3.837 4 H 0.034 0.966 5 C -0.635 4.635 6 H 0.084 0.916 7 C -0.218 4.218 8 N -0.571 5.571 9 Si 0.926 3.074 10 H -0.222 1.222 11 H -0.194 1.194 12 H -0.199 1.199 13 N -0.848 5.848 14 S 2.796 3.204 15 O -0.958 6.958 16 O -0.971 6.971 17 C -0.704 4.704 18 C -0.057 4.057 19 C -0.054 4.054 20 C -0.128 4.128 21 C 0.355 3.645 22 O -0.409 6.409 23 O -0.258 6.258 24 C -0.065 4.065 25 C 0.102 3.898 26 F -0.104 7.104 27 C -0.096 4.096 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.260 0.740 35 H 0.205 0.795 36 H 0.216 0.784 37 H 0.163 0.837 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.475 12.990 8.580 15.951 hybrid contribution 1.070 -0.110 0.704 1.286 sum 4.545 12.879 9.284 16.514 Atomic orbital electron populations 1.21467 0.94793 1.00124 1.01714 1.21993 0.98052 0.98389 0.99654 1.18431 0.92857 0.89347 0.83098 0.96603 1.22261 1.31501 1.17980 0.91797 0.91551 1.26827 0.95532 0.95341 1.04104 1.70906 1.24535 1.28217 1.33470 0.83103 0.76088 0.75585 0.72610 1.22166 1.19395 1.19909 1.55175 1.29063 1.70373 1.30149 1.01425 0.73025 0.73402 0.72578 1.93552 1.70743 1.72587 1.58900 1.93562 1.82022 1.37292 1.84180 1.31341 1.17472 1.09727 1.11883 1.21443 1.00460 0.90261 0.93490 1.21920 0.88768 1.03035 0.91633 1.19612 0.95974 0.90753 1.06425 1.20857 0.86373 0.82460 0.74809 1.90909 1.34615 1.73386 1.42014 1.86514 1.43687 1.17947 1.77665 1.23716 0.84248 0.97294 1.01219 1.17869 0.84156 0.90168 0.97578 1.91576 1.50939 1.83284 1.84603 1.20899 0.90979 1.01591 0.96102 0.92412 0.93155 0.93516 0.93290 0.93798 0.92814 0.73999 0.79465 0.78356 0.83732 0.91526 0.91981 0.82876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.66 9.48 71.98 0.68 -3.98 16 2 C -0.14 -6.12 5.58 30.59 0.17 -5.95 16 3 C 0.27 11.67 2.10 44.24 0.09 11.76 16 4 H 0.02 0.76 6.59 -2.39 -0.02 0.74 16 5 C -0.60 -28.30 7.54 25.60 0.19 -28.11 16 6 H 0.07 3.01 7.82 -2.91 -0.02 2.99 16 7 C -0.02 -0.91 5.24 84.65 0.44 -0.47 16 8 N -0.93 -52.24 12.83 21.45 0.28 -51.97 16 9 Si 1.10 45.99 29.91 68.60 2.05 48.04 16 10 H -0.30 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 12 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 13 N -1.09 -37.75 4.76 -172.52 -0.82 -38.57 16 14 S 2.71 87.94 5.64 -56.49 -0.32 87.62 16 15 O -0.97 -31.01 17.26 -128.00 -2.21 -33.22 16 16 O -0.98 -37.62 16.60 -128.00 -2.13 -39.74 16 17 C -0.62 -18.63 5.80 22.32 0.13 -18.51 16 18 C -0.04 -0.87 9.50 22.23 0.21 -0.66 16 19 C -0.04 -0.74 9.62 22.53 0.22 -0.52 16 20 C -0.13 -3.50 5.88 -20.06 -0.12 -3.62 16 21 C 0.51 14.11 7.89 70.28 0.55 14.66 16 22 O -0.52 -17.71 15.13 19.88 0.30 -17.41 16 23 O -0.34 -6.87 9.82 -56.44 -0.55 -7.42 16 24 C 0.03 0.38 10.56 113.37 1.20 1.58 16 25 C 0.12 4.12 7.29 22.69 0.17 4.28 16 26 F -0.13 -4.70 15.55 44.97 0.70 -4.00 16 27 C -0.08 -2.53 8.84 22.28 0.20 -2.34 16 28 H 0.06 1.92 7.19 -2.39 -0.02 1.91 16 29 H 0.05 2.02 7.40 -2.38 -0.02 2.00 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 2.38 6.21 -2.38 -0.01 2.36 16 32 H 0.04 1.85 7.71 -2.39 -0.02 1.83 16 33 H 0.26 14.74 6.09 -92.71 -0.56 14.17 16 34 H 0.42 12.88 8.46 -96.74 -0.82 12.07 16 35 H 0.19 3.14 7.60 -2.91 -0.02 3.11 16 36 H 0.20 2.43 7.61 -2.91 -0.02 2.40 16 37 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.15 5.25 7.59 -2.91 -0.02 5.23 16 Total: -1.00 -69.31 356.98 1.92 -67.39 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.49 Total: 21.14 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 4.14 Total: -31.87 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -0.55 Total: -90.54 kcal Atomic # 8 Polarization: -93.20 SS G_CDS: -4.59 Total: -97.79 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.70 Total: -4.00 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.05 Total: 48.04 kcal Atomic # 16 Polarization: 87.94 SS G_CDS: -0.32 Total: 87.62 kcal Total: -69.31 1.92 -67.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277805704.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.742 kcal (2) G-P(sol) polarization free energy of solvation -69.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds