Wall clock time and date at job start Wed Apr 1 2020 04:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34725 * 117.00265 * 2 1 4 4 O 1.21489 * 120.00091 * 359.97438 * 3 2 1 5 5 C 1.47561 * 120.00415 * 179.97438 * 3 2 1 6 6 C 1.39725 * 120.17036 * 359.97438 * 5 3 2 7 7 C 1.37837 * 119.87150 * 179.97438 * 6 5 3 8 8 C 1.38472 * 120.22697 * 0.26064 * 7 6 5 9 9 S 1.76191 * 119.82509 * 179.74292 * 8 7 6 10 10 O 1.42102 * 106.40282 * 203.53290 * 9 8 7 11 11 O 1.42102 * 106.40604 * 336.45623 * 9 8 7 12 12 N 1.65607 * 107.21730 * 89.99625 * 9 8 7 13 13 C 1.46494 * 120.00026 * 90.00452 * 12 9 8 14 14 C 1.46499 * 119.99797 * 269.99888 * 12 9 8 15 15 H 1.08995 * 109.47244 * 359.97438 * 14 12 9 16 16 C 1.52996 * 109.46989 * 120.00305 * 14 12 9 17 17 C 1.50704 * 109.46919 * 240.00289 * 14 12 9 18 18 H 1.07995 * 120.00220 * 0.02562 * 17 14 12 19 19 C 1.37885 * 119.99960 * 180.02562 * 17 14 12 20 20 N 1.31513 * 119.99706 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00055 * 179.97438 * 19 17 14 22 22 H 1.48499 * 109.47173 * 60.00009 * 21 19 17 23 23 H 1.48503 * 109.46854 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47166 * 299.99738 * 21 19 17 25 25 C 1.38208 * 120.35006 * 359.47858 * 8 7 6 26 26 C 1.38314 * 120.12038 * 0.51740 * 25 8 7 27 27 F 1.35104 * 120.11138 * 179.71959 * 26 25 8 28 28 H 1.08997 * 109.47076 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47675 * 300.01090 * 1 2 3 30 30 H 1.09004 * 109.46552 * 60.00222 * 1 2 3 31 31 H 1.07995 * 120.06381 * 359.95602 * 6 5 3 32 32 H 1.08002 * 119.88285 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.47667 * 89.99929 * 13 12 9 34 34 H 1.09003 * 109.47179 * 210.00005 * 13 12 9 35 35 H 1.09007 * 109.47277 * 329.99843 * 13 12 9 36 36 H 1.09004 * 109.47051 * 180.02562 * 16 14 12 37 37 H 1.08994 * 109.47304 * 299.99583 * 16 14 12 38 38 H 1.09001 * 109.47100 * 59.99852 * 16 14 12 39 39 H 0.97003 * 120.00202 * 180.02562 * 20 19 17 40 40 H 1.08002 * 119.94130 * 180.23863 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4020 2.2193 -0.0005 5 6 3.5372 1.2776 0.0006 6 6 4.3018 0.1081 0.0017 7 6 5.6778 0.1875 0.0016 8 6 6.3049 1.4220 0.0060 9 16 8.0646 1.5111 0.0128 10 8 8.4001 2.7787 0.5604 11 8 8.5265 0.2824 0.5571 12 7 8.5601 1.5384 -1.5671 13 6 8.7152 2.8175 -2.2642 14 6 8.8435 0.2833 -2.2676 15 1 8.6739 -0.5557 -1.5929 16 6 7.9205 0.1571 -3.4813 17 6 10.2792 0.2767 -2.7255 18 1 10.9170 1.1225 -2.5153 19 6 10.7787 -0.8093 -3.4128 20 7 10.0022 -1.8396 -3.6682 21 14 12.5582 -0.8173 -3.9809 22 1 13.4544 -0.6950 -2.8032 23 1 12.8454 -2.0896 -4.6909 24 1 12.7895 0.3261 -4.8999 25 6 5.5578 2.5848 -0.0004 26 6 4.1761 2.5220 -0.0005 27 9 3.4460 3.6588 -0.0011 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8898 30 1 -0.3632 0.5138 -0.8901 31 1 3.8154 -0.8561 0.0028 32 1 6.2690 -0.7164 0.0029 33 1 9.7329 3.1839 -2.1291 34 1 8.5172 2.6784 -3.3270 35 1 8.0110 3.5420 -1.8551 36 1 8.1310 -0.7770 -4.0023 37 1 6.8821 0.1618 -3.1502 38 1 8.0906 0.9961 -4.1559 39 1 10.3536 -2.6038 -4.1514 40 1 6.0538 3.5442 -0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277981840.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:05 Heat of formation + Delta-G solvation = -162.838480 kcal Electronic energy + Delta-G solvation = -28597.030770 eV Core-core repulsion = 24226.458969 eV Total energy + Delta-G solvation = -4370.571802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.15803 -40.80178 -38.95236 -36.91595 -36.75730 -36.31587 -35.44854 -32.67788 -32.23814 -30.93071 -29.19905 -28.15141 -25.73241 -25.25775 -24.88654 -23.20239 -21.57616 -20.82837 -19.08465 -18.43663 -17.81521 -17.37151 -16.96766 -16.78953 -16.67595 -16.27789 -16.01307 -15.76030 -15.30914 -14.84096 -14.61270 -14.13716 -13.73956 -13.68451 -13.53372 -13.34692 -12.98431 -12.95867 -12.68890 -12.47510 -12.12270 -12.03439 -11.85976 -11.64700 -11.45830 -11.33322 -11.16568 -11.13772 -11.03878 -10.87077 -10.73119 -10.51368 -10.36041 -10.08955 -9.80905 -9.35886 -9.14400 -8.51808 -8.11598 -6.13885 -4.20746 -0.14212 0.73266 0.81775 1.99710 2.21028 3.04954 3.27425 3.32080 3.35034 3.50207 3.74857 4.07926 4.18842 4.29026 4.35491 4.61890 4.76239 4.80447 4.84623 4.94558 5.14920 5.17122 5.17882 5.40068 5.46974 5.63511 5.67805 5.76979 5.92519 6.04732 6.25023 6.36260 6.51953 6.66812 6.70828 6.90253 7.29378 7.31180 7.53074 7.69743 7.95128 8.18043 8.81029 9.45376 10.91773 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.017307 B = 0.003235 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.414992 B = 8651.935753 C = 9416.232301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.350 6.350 3 C 0.508 3.492 4 O -0.488 6.488 5 C -0.124 4.124 6 C -0.053 4.053 7 C -0.040 4.040 8 C -0.613 4.613 9 S 2.678 3.322 10 O -0.964 6.964 11 O -0.940 6.940 12 N -0.974 5.974 13 C 0.105 3.895 14 C 0.265 3.735 15 H 0.063 0.937 16 C -0.152 4.152 17 C -0.521 4.521 18 H 0.064 0.936 19 C 0.065 3.935 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.277 1.277 25 C -0.069 4.069 26 C 0.142 3.858 27 F -0.113 7.113 28 H 0.106 0.894 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.157 0.843 32 H 0.161 0.839 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.011 0.989 38 H 0.036 0.964 39 H 0.265 0.735 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.967 3.377 5.084 16.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.267 6.267 3 C 0.351 3.649 4 O -0.376 6.376 5 C -0.126 4.126 6 C -0.072 4.072 7 C -0.059 4.059 8 C -0.695 4.695 9 S 2.764 3.236 10 O -0.954 6.954 11 O -0.930 6.930 12 N -0.816 5.816 13 C -0.041 4.041 14 C 0.163 3.837 15 H 0.081 0.919 16 C -0.211 4.211 17 C -0.561 4.561 18 H 0.082 0.918 19 C -0.137 4.137 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.089 4.089 26 C 0.121 3.879 27 F -0.091 7.091 28 H 0.124 0.876 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.175 0.825 32 H 0.178 0.822 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.114 0.886 37 H 0.030 0.970 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.773 3.562 5.730 16.241 hybrid contribution -0.233 0.183 -0.747 0.804 sum -15.006 3.745 4.983 16.249 Atomic orbital electron populations 1.23339 0.75389 1.04082 1.02825 1.86539 1.23969 1.31959 1.84222 1.20861 0.88506 0.81954 0.73540 1.90912 1.66473 1.35746 1.44481 1.19391 0.90235 0.94009 1.08960 1.21541 0.93644 0.97694 0.94309 1.21124 0.94715 0.97234 0.92865 1.31989 1.30255 0.98153 1.09101 1.02682 0.73218 0.73748 0.73953 1.93542 1.81875 1.42655 1.77317 1.93606 1.77792 1.44876 1.76728 1.57456 1.78944 1.14370 1.30798 1.21266 1.00987 0.83066 0.98812 1.18865 0.95384 0.78687 0.90759 0.91944 1.22163 0.95175 1.03654 1.00128 1.21259 0.95087 1.03497 1.36276 0.91788 1.24895 0.98036 0.95206 0.95609 1.69833 1.35646 1.06648 1.40671 0.86534 0.84588 0.77278 0.78890 1.20086 1.21210 1.20209 1.20872 0.91250 0.99584 0.97184 1.17641 0.89240 0.81130 0.99879 1.91612 1.77032 1.47503 1.92925 0.87593 0.91661 0.91597 0.82493 0.82161 0.92574 0.90551 0.93012 0.88607 0.97019 0.94538 0.92541 0.82088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.33 16 2 O -0.35 -3.67 9.82 -40.56 -0.40 -4.06 16 3 C 0.51 6.56 7.89 34.53 0.27 6.83 16 4 O -0.49 -7.42 15.13 -19.26 -0.29 -7.71 16 5 C -0.12 -1.61 5.88 -104.93 -0.62 -2.22 16 6 C -0.05 -0.61 9.62 -39.17 -0.38 -0.99 16 7 C -0.04 -0.54 9.50 -39.64 -0.38 -0.91 16 8 C -0.61 -9.03 5.98 -39.51 -0.24 -9.27 16 9 S 2.68 47.77 5.63 -107.50 -0.61 47.17 16 10 O -0.96 -17.97 16.34 -57.17 -0.93 -18.90 16 11 O -0.94 -19.43 15.83 -57.17 -0.91 -20.34 16 12 N -0.97 -18.51 3.06 -115.86 -0.35 -18.87 16 13 C 0.10 1.70 9.53 59.84 0.57 2.27 16 14 C 0.27 5.98 2.62 -69.08 -0.18 5.80 16 15 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16 16 C -0.15 -3.19 8.95 37.16 0.33 -2.86 16 17 C -0.52 -13.22 8.37 -34.44 -0.29 -13.51 16 18 H 0.06 1.61 7.65 -52.49 -0.40 1.21 16 19 C 0.07 1.68 5.30 -17.82 -0.09 1.59 16 20 N -0.89 -23.46 11.32 55.43 0.63 -22.84 16 21 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 25 C -0.07 -0.94 9.48 -39.56 -0.38 -1.32 16 26 C 0.14 1.96 7.29 -38.94 -0.28 1.68 16 27 F -0.11 -1.66 15.55 2.25 0.04 -1.62 16 28 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.16 1.37 7.61 -52.49 -0.40 0.98 16 32 H 0.16 2.02 7.60 -52.49 -0.40 1.62 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.20 6.43 -51.93 -0.33 0.87 16 35 H 0.05 0.68 7.79 -51.93 -0.40 0.28 16 36 H 0.10 2.25 6.07 -51.93 -0.32 1.94 16 37 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.04 0.73 6.66 -51.93 -0.35 0.38 16 39 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 40 H 0.16 1.94 7.60 -52.49 -0.40 1.54 16 LS Contribution 357.85 15.07 5.39 5.39 Total: -1.00 -31.36 357.85 -7.65 -39.00 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -4.60 Total: -0.89 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -0.59 Total: -11.58 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.27 Total: -41.70 kcal Atomic # 8 Polarization: -48.49 SS G_CDS: -2.53 Total: -51.02 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 47.77 SS G_CDS: -0.61 Total: 47.17 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.36 -7.65 -39.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277981840.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.836 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds