Wall clock time and date at job start Wed Apr 1 2020 04:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34725 * 117.00265 * 2 1 4 4 O 1.21489 * 120.00091 * 359.97438 * 3 2 1 5 5 C 1.47561 * 120.00415 * 179.97438 * 3 2 1 6 6 C 1.39725 * 120.17036 * 359.97438 * 5 3 2 7 7 C 1.37837 * 119.87150 * 179.97438 * 6 5 3 8 8 C 1.38472 * 120.22697 * 0.26064 * 7 6 5 9 9 S 1.76191 * 119.82509 * 179.74292 * 8 7 6 10 10 O 1.42102 * 106.40282 * 203.53290 * 9 8 7 11 11 O 1.42102 * 106.40604 * 336.45623 * 9 8 7 12 12 N 1.65607 * 107.21730 * 89.99625 * 9 8 7 13 13 C 1.46494 * 120.00026 * 90.00452 * 12 9 8 14 14 C 1.46499 * 119.99797 * 269.99888 * 12 9 8 15 15 H 1.08995 * 109.47244 * 359.97438 * 14 12 9 16 16 C 1.52996 * 109.46989 * 120.00305 * 14 12 9 17 17 C 1.50704 * 109.46919 * 240.00289 * 14 12 9 18 18 H 1.07995 * 120.00220 * 0.02562 * 17 14 12 19 19 C 1.37885 * 119.99960 * 180.02562 * 17 14 12 20 20 N 1.31513 * 119.99706 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00055 * 179.97438 * 19 17 14 22 22 H 1.48499 * 109.47173 * 60.00009 * 21 19 17 23 23 H 1.48503 * 109.46854 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47166 * 299.99738 * 21 19 17 25 25 C 1.38208 * 120.35006 * 359.47858 * 8 7 6 26 26 C 1.38314 * 120.12038 * 0.51740 * 25 8 7 27 27 F 1.35104 * 120.11138 * 179.71959 * 26 25 8 28 28 H 1.08997 * 109.47076 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47675 * 300.01090 * 1 2 3 30 30 H 1.09004 * 109.46552 * 60.00222 * 1 2 3 31 31 H 1.07995 * 120.06381 * 359.95602 * 6 5 3 32 32 H 1.08002 * 119.88285 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.47667 * 89.99929 * 13 12 9 34 34 H 1.09003 * 109.47179 * 210.00005 * 13 12 9 35 35 H 1.09007 * 109.47277 * 329.99843 * 13 12 9 36 36 H 1.09004 * 109.47051 * 180.02562 * 16 14 12 37 37 H 1.08994 * 109.47304 * 299.99583 * 16 14 12 38 38 H 1.09001 * 109.47100 * 59.99852 * 16 14 12 39 39 H 0.97003 * 120.00202 * 180.02562 * 20 19 17 40 40 H 1.08002 * 119.94130 * 180.23863 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4020 2.2193 -0.0005 5 6 3.5372 1.2776 0.0006 6 6 4.3018 0.1081 0.0017 7 6 5.6778 0.1875 0.0016 8 6 6.3049 1.4220 0.0060 9 16 8.0646 1.5111 0.0128 10 8 8.4001 2.7787 0.5604 11 8 8.5265 0.2824 0.5571 12 7 8.5601 1.5384 -1.5671 13 6 8.7152 2.8175 -2.2642 14 6 8.8435 0.2833 -2.2676 15 1 8.6739 -0.5557 -1.5929 16 6 7.9205 0.1571 -3.4813 17 6 10.2792 0.2767 -2.7255 18 1 10.9170 1.1225 -2.5153 19 6 10.7787 -0.8093 -3.4128 20 7 10.0022 -1.8396 -3.6682 21 14 12.5582 -0.8173 -3.9809 22 1 13.4544 -0.6950 -2.8032 23 1 12.8454 -2.0896 -4.6909 24 1 12.7895 0.3261 -4.8999 25 6 5.5578 2.5848 -0.0004 26 6 4.1761 2.5220 -0.0005 27 9 3.4460 3.6588 -0.0011 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8898 30 1 -0.3632 0.5138 -0.8901 31 1 3.8154 -0.8561 0.0028 32 1 6.2690 -0.7164 0.0029 33 1 9.7329 3.1839 -2.1291 34 1 8.5172 2.6784 -3.3270 35 1 8.0110 3.5420 -1.8551 36 1 8.1310 -0.7770 -4.0023 37 1 6.8821 0.1618 -3.1502 38 1 8.0906 0.9961 -4.1559 39 1 10.3536 -2.6038 -4.1514 40 1 6.0538 3.5442 -0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277981840.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:04 Heat of formation + Delta-G solvation = -182.536292 kcal Electronic energy + Delta-G solvation = -28597.884932 eV Core-core repulsion = 24226.458969 eV Total energy + Delta-G solvation = -4371.425963 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.24876 -41.75058 -39.98450 -38.41652 -37.91087 -37.68082 -36.95307 -34.50649 -33.29346 -31.98179 -30.88857 -28.84265 -27.25619 -27.01002 -25.93578 -24.22354 -22.68841 -22.37393 -20.34927 -19.50590 -19.08883 -18.58200 -18.34388 -18.17595 -17.70230 -17.56343 -17.17606 -16.93699 -16.79883 -16.27326 -15.77420 -15.30934 -15.06127 -14.77146 -14.61331 -14.60159 -14.50398 -14.09152 -13.80677 -13.69332 -13.40805 -13.28724 -13.16345 -13.12826 -12.96925 -12.88727 -12.75365 -12.56769 -12.36932 -12.18904 -12.11516 -11.92849 -11.88720 -11.72102 -11.12413 -10.89054 -10.45201 -10.19356 -9.68288 -8.07699 -6.19995 -1.22707 -0.66292 -0.21371 0.97228 1.35459 1.47655 1.49475 1.55728 1.91100 2.20530 2.47857 2.65700 2.74486 3.12200 3.21490 3.33055 3.51366 3.69532 3.83747 4.08990 4.14956 4.24298 4.30491 4.36817 4.63085 4.66027 4.68823 4.72276 4.75611 4.87541 5.02839 5.06096 5.06755 5.15950 5.22106 5.32868 5.65733 5.73374 5.90366 6.15050 6.33826 6.38275 6.86461 7.48518 8.96112 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.017307 B = 0.003235 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.414992 B = 8651.935753 C = 9416.232301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.346 6.346 3 C 0.511 3.489 4 O -0.516 6.516 5 C -0.124 4.124 6 C -0.035 4.035 7 C -0.045 4.045 8 C -0.616 4.616 9 S 2.691 3.309 10 O -0.976 6.976 11 O -0.975 6.975 12 N -0.983 5.983 13 C 0.095 3.905 14 C 0.270 3.730 15 H 0.040 0.960 16 C -0.141 4.141 17 C -0.538 4.538 18 H 0.058 0.942 19 C 0.022 3.978 20 N -0.910 5.910 21 Si 0.951 3.049 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.269 1.269 25 C -0.067 4.067 26 C 0.132 3.868 27 F -0.120 7.120 28 H 0.140 0.860 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.190 0.810 32 H 0.165 0.835 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.036 0.964 38 H 0.042 0.958 39 H 0.264 0.736 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.349 3.304 4.975 17.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.262 6.262 3 C 0.356 3.644 4 O -0.406 6.406 5 C -0.126 4.126 6 C -0.054 4.054 7 C -0.064 4.064 8 C -0.702 4.702 9 S 2.782 3.218 10 O -0.966 6.966 11 O -0.966 6.966 12 N -0.823 5.823 13 C -0.050 4.050 14 C 0.166 3.834 15 H 0.057 0.943 16 C -0.200 4.200 17 C -0.578 4.578 18 H 0.076 0.924 19 C -0.178 4.178 20 N -0.549 5.549 21 Si 0.777 3.223 22 H -0.205 1.205 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.086 4.086 26 C 0.111 3.889 27 F -0.098 7.098 28 H 0.158 0.842 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.207 0.793 32 H 0.183 0.817 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -16.108 3.495 5.616 17.414 hybrid contribution 0.049 0.195 -0.649 0.680 sum -16.059 3.690 4.966 17.210 Atomic orbital electron populations 1.23700 0.73407 1.06392 1.02928 1.86532 1.25837 1.30384 1.83452 1.20843 0.88383 0.82289 0.72914 1.90903 1.66987 1.36810 1.45918 1.19583 0.90739 0.94100 1.08199 1.21802 0.92642 0.98618 0.92317 1.21314 0.95671 0.96854 0.92561 1.31375 1.27780 0.99402 1.11651 1.01881 0.74030 0.72729 0.73135 1.93520 1.82907 1.42846 1.77321 1.93559 1.79392 1.46272 1.77352 1.57312 1.79996 1.14149 1.30885 1.21485 1.01735 0.82548 0.99199 1.18550 0.94416 0.79537 0.90919 0.94267 1.21973 0.96279 1.02470 0.99287 1.21606 0.96748 1.03292 1.36152 0.92380 1.25546 1.01162 0.95144 0.95974 1.69938 1.36805 1.06964 1.41216 0.85730 0.80799 0.77464 0.78340 1.20469 1.20897 1.19437 1.20947 0.91280 0.99750 0.96666 1.17734 0.89274 0.81339 1.00540 1.91595 1.77148 1.47946 1.93084 0.84191 0.91511 0.91633 0.79256 0.81711 0.93135 0.90123 0.89831 0.91143 0.94513 0.93920 0.92622 0.80807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 113.37 1.20 1.53 16 2 O -0.35 -6.28 9.82 -56.35 -0.55 -6.83 16 3 C 0.51 12.17 7.89 70.28 0.55 12.73 16 4 O -0.52 -15.02 15.13 19.87 0.30 -14.72 16 5 C -0.12 -2.95 5.88 -20.06 -0.12 -3.07 16 6 C -0.04 -0.72 9.62 22.53 0.22 -0.50 16 7 C -0.04 -1.11 9.50 22.23 0.21 -0.90 16 8 C -0.62 -17.32 5.98 22.32 0.13 -17.18 16 9 S 2.69 95.01 5.63 -56.49 -0.32 94.69 16 10 O -0.98 -35.74 16.34 -128.00 -2.09 -37.83 16 11 O -0.98 -40.82 15.83 -128.00 -2.03 -42.85 16 12 N -0.98 -36.91 3.06 -520.46 -1.59 -38.50 16 13 C 0.10 2.99 9.53 127.77 1.22 4.21 16 14 C 0.27 12.18 2.62 44.25 0.12 12.29 16 15 H 0.04 1.95 6.91 -2.39 -0.02 1.94 16 16 C -0.14 -5.83 8.95 71.98 0.64 -5.19 16 17 C -0.54 -27.48 8.37 25.60 0.21 -27.27 16 18 H 0.06 2.95 7.65 -2.91 -0.02 2.93 16 19 C 0.02 1.14 5.30 84.66 0.45 1.59 16 20 N -0.91 -48.39 11.32 21.45 0.24 -48.15 16 21 Si 0.95 41.56 29.54 68.60 2.03 43.59 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 25 C -0.07 -1.71 9.48 22.28 0.21 -1.50 16 26 C 0.13 3.44 7.29 22.69 0.17 3.60 16 27 F -0.12 -3.38 15.55 44.97 0.70 -2.68 16 28 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.19 2.59 7.61 -2.91 -0.02 2.57 16 32 H 0.17 3.96 7.60 -2.91 -0.02 3.94 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 2.44 6.43 -2.39 -0.02 2.42 16 35 H 0.08 2.05 7.79 -2.38 -0.02 2.03 16 36 H 0.07 3.31 6.07 -2.38 -0.01 3.30 16 37 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.04 1.67 6.66 -2.39 -0.02 1.65 16 39 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 40 H 0.17 3.90 7.60 -2.91 -0.02 3.88 16 Total: -1.00 -67.18 357.85 2.98 -64.20 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 1.08 Total: 8.74 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 5.21 Total: -19.65 kcal Atomic # 7 Polarization: -85.30 SS G_CDS: -1.35 Total: -86.65 kcal Atomic # 8 Polarization: -97.86 SS G_CDS: -4.37 Total: -102.23 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.70 Total: -2.68 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: 95.01 SS G_CDS: -0.32 Total: 94.69 kcal Total: -67.18 2.98 -64.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277981840.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.339 kcal (2) G-P(sol) polarization free energy of solvation -67.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds