Wall clock time and date at job start Wed Apr 1 2020 03:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34726 * 116.99648 * 2 1 4 4 O 1.21482 * 120.00488 * 0.02562 * 3 2 1 5 5 C 1.47606 * 119.99722 * 180.02562 * 3 2 1 6 6 C 1.39722 * 120.11961 * 6.23319 * 5 3 2 7 7 C 1.37802 * 119.87109 * 179.70075 * 6 5 3 8 8 S 1.76202 * 119.93849 * 180.30023 * 7 6 5 9 9 O 1.42100 * 106.40143 * 228.79705 * 8 7 6 10 10 O 1.42104 * 106.40184 * 1.71423 * 8 7 6 11 11 N 1.65604 * 107.21793 * 115.25731 * 8 7 6 12 12 C 1.46495 * 120.00151 * 64.99867 * 11 8 7 13 13 H 1.08996 * 109.46837 * 25.00112 * 12 11 8 14 14 C 1.53001 * 109.47127 * 265.00106 * 12 11 8 15 15 C 1.50704 * 109.46953 * 144.99784 * 12 11 8 16 16 H 1.08001 * 120.00173 * 0.02562 * 15 12 11 17 17 C 1.37879 * 120.00022 * 179.97438 * 15 12 11 18 18 N 1.31524 * 119.99594 * 0.02562 * 17 15 12 19 19 Si 1.86791 * 120.00085 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47249 * 90.00454 * 19 17 15 21 21 H 1.48501 * 109.47046 * 210.00020 * 19 17 15 22 22 H 1.48498 * 109.47147 * 330.00135 * 19 17 15 23 23 C 1.38690 * 120.12431 * 0.55410 * 7 6 5 24 24 F 1.35101 * 119.87554 * 179.72195 * 23 7 6 25 25 C 1.38647 * 120.24793 * 359.44629 * 23 7 6 26 26 C 1.37836 * 120.12252 * 0.27744 * 25 23 7 27 27 C 1.50704 * 120.06426 * 180.02562 * 26 25 23 28 28 H 1.08992 * 109.47272 * 179.97438 * 1 2 3 29 29 H 1.09010 * 109.46977 * 299.99949 * 1 2 3 30 30 H 1.09003 * 109.46832 * 59.99616 * 1 2 3 31 31 H 1.07998 * 120.07022 * 359.97438 * 6 5 3 32 32 H 0.97003 * 119.99676 * 245.00204 * 11 8 7 33 33 H 1.08999 * 109.46771 * 299.99859 * 14 12 11 34 34 H 1.08994 * 109.47060 * 60.00019 * 14 12 11 35 35 H 1.09002 * 109.46644 * 180.02562 * 14 12 11 36 36 H 0.97001 * 119.99458 * 180.02562 * 18 17 15 37 37 H 1.07995 * 119.93672 * 180.25079 * 25 23 7 38 38 H 1.09000 * 109.47471 * 96.57556 * 27 26 25 39 39 H 1.09003 * 109.47085 * 216.58137 * 27 26 25 40 40 H 1.09006 * 109.47002 * 336.57848 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4020 2.2193 0.0005 5 6 3.5377 1.2777 -0.0006 6 6 4.3007 0.1147 -0.1323 7 6 5.6764 0.1934 -0.1384 8 16 6.6403 -1.2713 -0.3124 9 8 7.6225 -1.2295 0.7137 10 8 5.7188 -2.3425 -0.4631 11 7 7.4580 -1.1524 -1.7476 12 6 8.4704 -0.1093 -1.9296 13 1 8.8670 0.1855 -0.9580 14 6 7.8352 1.1046 -2.6108 15 6 9.5891 -0.6395 -2.7890 16 1 9.5497 -1.6520 -3.1626 17 6 10.6624 0.1685 -3.0992 18 7 10.7102 1.4017 -2.6446 19 14 12.0487 -0.4885 -4.1649 20 1 11.7477 -0.2143 -5.5931 21 1 13.3206 0.1800 -3.7901 22 1 12.1798 -1.9532 -3.9591 23 6 6.3039 1.4228 -0.0026 24 9 7.6530 1.4935 -0.0036 25 6 5.5517 2.5801 0.1286 26 6 4.1749 2.5138 0.1303 27 6 3.3587 3.7727 0.2723 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 3.8132 -0.8437 -0.2337 32 1 7.2666 -1.7734 -2.4677 33 1 7.4386 0.8098 -3.5823 34 1 7.0262 1.4880 -1.9892 35 1 8.5887 1.8805 -2.7465 36 1 11.4652 1.9702 -2.8631 37 1 6.0455 3.5352 0.2300 38 1 3.0563 4.1230 -0.7146 39 1 2.4721 3.5652 0.8716 40 1 3.9572 4.5404 0.7627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293477475.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:09 Heat of formation + Delta-G solvation = -165.129015 kcal Electronic energy + Delta-G solvation = -29214.981169 eV Core-core repulsion = 24844.310043 eV Total energy + Delta-G solvation = -4370.671127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.18149 -40.92947 -38.97582 -36.79773 -36.70128 -35.50895 -35.41240 -33.10051 -32.22666 -31.49183 -28.41478 -28.31966 -27.37020 -25.31549 -24.14323 -22.56295 -21.52856 -21.04873 -19.19254 -18.44867 -17.65931 -17.55131 -17.17469 -16.67112 -16.47124 -16.16029 -15.75827 -15.67848 -15.22413 -14.61488 -14.41100 -14.22680 -14.04915 -13.68855 -13.55764 -13.16788 -13.10483 -12.61741 -12.38154 -12.34156 -12.24212 -12.06262 -11.99229 -11.77850 -11.67061 -11.57107 -11.16770 -11.05468 -10.99650 -10.80694 -10.63945 -10.39445 -10.36373 -10.12235 -9.46870 -9.28077 -9.01832 -8.66929 -8.33629 -6.13761 -4.20916 0.24984 0.64381 0.88388 2.12447 2.40689 3.14636 3.25579 3.32734 3.36117 3.59919 3.86976 4.03523 4.26925 4.35541 4.42425 4.54226 4.84460 4.86153 4.92361 5.02915 5.18680 5.23742 5.27536 5.29045 5.47861 5.54658 5.59528 5.62365 5.86660 5.94661 6.21684 6.26781 6.46416 6.64745 6.73407 6.93856 7.46848 7.53749 7.61364 7.82976 7.96494 8.22542 8.81096 9.44526 10.92279 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.017732 B = 0.003601 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.729351 B = 7772.923668 C = 8490.394130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.353 6.353 3 C 0.516 3.484 4 O -0.503 6.503 5 C -0.178 4.178 6 C 0.069 3.931 7 C -0.736 4.736 8 S 2.690 3.310 9 O -0.947 6.947 10 O -0.973 6.973 11 N -1.094 6.094 12 C 0.257 3.743 13 H 0.066 0.934 14 C -0.159 4.159 15 C -0.521 4.521 16 H 0.065 0.935 17 C 0.064 3.936 18 N -0.886 5.886 19 Si 0.902 3.098 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.255 3.745 24 F -0.091 7.091 25 C -0.193 4.193 26 C 0.057 3.943 27 C -0.130 4.130 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.165 0.835 32 H 0.412 0.588 33 H 0.034 0.966 34 H 0.005 0.995 35 H 0.097 0.903 36 H 0.264 0.736 37 H 0.155 0.845 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.074 2.499 4.952 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.269 6.269 3 C 0.363 3.637 4 O -0.393 6.393 5 C -0.180 4.180 6 C 0.050 3.950 7 C -0.819 4.819 8 S 2.774 3.226 9 O -0.937 6.937 10 O -0.963 6.963 11 N -0.856 5.856 12 C 0.153 3.847 13 H 0.084 0.916 14 C -0.218 4.218 15 C -0.561 4.561 16 H 0.083 0.917 17 C -0.139 4.139 18 N -0.524 5.524 19 Si 0.730 3.270 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.197 1.197 23 C 0.234 3.766 24 F -0.068 7.068 25 C -0.212 4.212 26 C 0.056 3.944 27 C -0.186 4.186 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.182 0.818 32 H 0.246 0.754 33 H 0.053 0.947 34 H 0.024 0.976 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.173 0.827 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.071 2.442 5.717 18.168 hybrid contribution 0.500 0.307 -1.228 1.361 sum -16.571 2.749 4.489 17.387 Atomic orbital electron populations 1.23310 0.75677 1.04000 1.02618 1.86579 1.23783 1.32377 1.84200 1.20905 0.88592 0.81559 0.72689 1.90786 1.66835 1.35393 1.46260 1.18943 0.89545 0.94498 1.15012 1.21093 0.90566 0.99163 0.84206 1.31423 1.08437 1.19560 1.22500 1.02105 0.73195 0.72849 0.74421 1.93616 1.57937 1.85935 1.56240 1.93529 1.64923 1.51084 1.86781 1.55533 1.51990 1.45341 1.32744 1.18936 0.84422 0.82593 0.98700 0.91603 1.22459 0.99164 1.01699 0.98501 1.21195 1.03709 0.99313 1.31876 0.91658 1.24911 0.98121 0.94866 0.95985 1.69867 1.31092 1.06743 1.44717 0.86433 0.81179 0.79181 0.80242 1.20643 1.21082 1.19748 1.17335 0.78035 0.92959 0.88249 1.91798 1.26892 1.96807 1.91302 1.21105 0.93156 0.98557 1.08409 1.20043 0.92962 0.94485 0.86860 1.21273 1.00266 0.92821 1.04202 0.87778 0.91761 0.91705 0.81752 0.75393 0.94702 0.97648 0.88420 0.92577 0.82687 0.89349 0.88266 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.35 -3.97 9.83 -40.56 -0.40 -4.37 16 3 C 0.52 6.50 7.82 34.55 0.27 6.77 16 4 O -0.50 -6.61 13.13 -19.25 -0.25 -6.87 16 5 C -0.18 -2.37 5.87 -104.98 -0.62 -2.99 16 6 C 0.07 0.99 9.11 -39.19 -0.36 0.63 16 7 C -0.74 -12.20 5.72 -39.57 -0.23 -12.43 16 8 S 2.69 50.72 5.46 -107.50 -0.59 50.13 16 9 O -0.95 -20.92 16.76 -57.17 -0.96 -21.88 16 10 O -0.97 -18.28 16.96 -57.17 -0.97 -19.25 16 11 N -1.09 -21.88 5.46 -5.88 -0.03 -21.91 16 12 C 0.26 6.09 2.13 -69.08 -0.15 5.95 16 13 H 0.07 1.71 5.56 -51.93 -0.29 1.42 16 14 C -0.16 -3.53 8.39 37.16 0.31 -3.22 16 15 C -0.52 -13.57 8.76 -34.44 -0.30 -13.87 16 16 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 17 C 0.06 1.69 5.30 -17.81 -0.09 1.59 16 18 N -0.89 -23.92 11.32 55.43 0.63 -23.29 16 19 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 C 0.26 4.27 4.75 -39.26 -0.19 4.08 16 24 F -0.09 -1.77 11.67 2.25 0.03 -1.75 16 25 C -0.19 -2.61 9.64 -39.58 -0.38 -2.99 16 26 C 0.06 0.72 5.91 -104.23 -0.62 0.10 16 27 C -0.13 -1.31 8.73 36.01 0.31 -0.99 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.17 2.13 6.89 -52.49 -0.36 1.77 16 32 H 0.41 7.35 8.83 -34.47 -0.30 7.05 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.00 0.09 4.34 -51.93 -0.23 -0.13 16 35 H 0.10 2.40 6.07 -51.93 -0.32 2.08 16 36 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 37 H 0.16 1.72 8.05 -52.49 -0.42 1.29 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 1.06 5.86 -51.93 -0.30 0.75 16 40 H 0.07 0.57 8.04 -51.93 -0.42 0.16 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -31.60 344.61 -7.63 -39.23 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -4.30 Total: 5.31 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -0.96 Total: -16.02 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.60 Total: -45.20 kcal Atomic # 8 Polarization: -49.78 SS G_CDS: -2.58 Total: -52.36 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.03 Total: -1.75 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 50.72 SS G_CDS: -0.59 Total: 50.13 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.60 -7.63 -39.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293477475.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.897 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds