Wall clock time and date at job start Wed Apr 1 2020 03:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34726 * 116.99648 * 2 1 4 4 O 1.21482 * 120.00488 * 0.02562 * 3 2 1 5 5 C 1.47606 * 119.99722 * 180.02562 * 3 2 1 6 6 C 1.39722 * 120.11961 * 6.23319 * 5 3 2 7 7 C 1.37802 * 119.87109 * 179.70075 * 6 5 3 8 8 S 1.76202 * 119.93849 * 180.30023 * 7 6 5 9 9 O 1.42100 * 106.40143 * 228.79705 * 8 7 6 10 10 O 1.42104 * 106.40184 * 1.71423 * 8 7 6 11 11 N 1.65604 * 107.21793 * 115.25731 * 8 7 6 12 12 C 1.46495 * 120.00151 * 64.99867 * 11 8 7 13 13 H 1.08996 * 109.46837 * 25.00112 * 12 11 8 14 14 C 1.53001 * 109.47127 * 265.00106 * 12 11 8 15 15 C 1.50704 * 109.46953 * 144.99784 * 12 11 8 16 16 H 1.08001 * 120.00173 * 0.02562 * 15 12 11 17 17 C 1.37879 * 120.00022 * 179.97438 * 15 12 11 18 18 N 1.31524 * 119.99594 * 0.02562 * 17 15 12 19 19 Si 1.86791 * 120.00085 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47249 * 90.00454 * 19 17 15 21 21 H 1.48501 * 109.47046 * 210.00020 * 19 17 15 22 22 H 1.48498 * 109.47147 * 330.00135 * 19 17 15 23 23 C 1.38690 * 120.12431 * 0.55410 * 7 6 5 24 24 F 1.35101 * 119.87554 * 179.72195 * 23 7 6 25 25 C 1.38647 * 120.24793 * 359.44629 * 23 7 6 26 26 C 1.37836 * 120.12252 * 0.27744 * 25 23 7 27 27 C 1.50704 * 120.06426 * 180.02562 * 26 25 23 28 28 H 1.08992 * 109.47272 * 179.97438 * 1 2 3 29 29 H 1.09010 * 109.46977 * 299.99949 * 1 2 3 30 30 H 1.09003 * 109.46832 * 59.99616 * 1 2 3 31 31 H 1.07998 * 120.07022 * 359.97438 * 6 5 3 32 32 H 0.97003 * 119.99676 * 245.00204 * 11 8 7 33 33 H 1.08999 * 109.46771 * 299.99859 * 14 12 11 34 34 H 1.08994 * 109.47060 * 60.00019 * 14 12 11 35 35 H 1.09002 * 109.46644 * 180.02562 * 14 12 11 36 36 H 0.97001 * 119.99458 * 180.02562 * 18 17 15 37 37 H 1.07995 * 119.93672 * 180.25079 * 25 23 7 38 38 H 1.09000 * 109.47471 * 96.57556 * 27 26 25 39 39 H 1.09003 * 109.47085 * 216.58137 * 27 26 25 40 40 H 1.09006 * 109.47002 * 336.57848 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4020 2.2193 0.0005 5 6 3.5377 1.2777 -0.0006 6 6 4.3007 0.1147 -0.1323 7 6 5.6764 0.1934 -0.1384 8 16 6.6403 -1.2713 -0.3124 9 8 7.6225 -1.2295 0.7137 10 8 5.7188 -2.3425 -0.4631 11 7 7.4580 -1.1524 -1.7476 12 6 8.4704 -0.1093 -1.9296 13 1 8.8670 0.1855 -0.9580 14 6 7.8352 1.1046 -2.6108 15 6 9.5891 -0.6395 -2.7890 16 1 9.5497 -1.6520 -3.1626 17 6 10.6624 0.1685 -3.0992 18 7 10.7102 1.4017 -2.6446 19 14 12.0487 -0.4885 -4.1649 20 1 11.7477 -0.2143 -5.5931 21 1 13.3206 0.1800 -3.7901 22 1 12.1798 -1.9532 -3.9591 23 6 6.3039 1.4228 -0.0026 24 9 7.6530 1.4935 -0.0036 25 6 5.5517 2.5801 0.1286 26 6 4.1749 2.5138 0.1303 27 6 3.3587 3.7727 0.2723 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 3.8132 -0.8437 -0.2337 32 1 7.2666 -1.7734 -2.4677 33 1 7.4386 0.8098 -3.5823 34 1 7.0262 1.4880 -1.9892 35 1 8.5887 1.8805 -2.7465 36 1 11.4652 1.9702 -2.8631 37 1 6.0455 3.5352 0.2300 38 1 3.0563 4.1230 -0.7146 39 1 2.4721 3.5652 0.8716 40 1 3.9572 4.5404 0.7627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293477475.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:08 Heat of formation + Delta-G solvation = -186.801791 kcal Electronic energy + Delta-G solvation = -29215.920972 eV Core-core repulsion = 24844.310043 eV Total energy + Delta-G solvation = -4371.610929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.53973 -41.89577 -40.01977 -38.36714 -37.63416 -37.28592 -37.01497 -34.18856 -34.11195 -32.58343 -30.18350 -29.19980 -28.18780 -27.25654 -25.23477 -23.61042 -22.87764 -22.59706 -20.55012 -19.83345 -19.09937 -18.81774 -18.28431 -17.95654 -17.62621 -17.51242 -17.15904 -17.13799 -16.73347 -16.30757 -15.52406 -15.43858 -15.11936 -14.91661 -14.78917 -14.34811 -14.06208 -14.02076 -13.92291 -13.54880 -13.38024 -13.28779 -13.23130 -13.17763 -13.14719 -12.96557 -12.95691 -12.78736 -12.43885 -12.23174 -12.07959 -11.97710 -11.82295 -11.33677 -11.09053 -10.62011 -10.53733 -10.25586 -10.10253 -8.12049 -6.25796 -0.91068 -0.65939 -0.42403 1.08274 1.45888 1.47703 1.55240 1.57239 1.95984 2.17757 2.45770 2.54569 2.73380 3.08781 3.18073 3.43014 3.46224 3.66906 3.92179 4.08069 4.29744 4.35658 4.37365 4.43748 4.49664 4.53517 4.56173 4.71260 4.75296 4.89126 4.93268 5.02781 5.05376 5.11012 5.25472 5.46318 5.59822 5.77481 6.03877 6.11682 6.39903 6.54619 6.83209 7.42641 8.93044 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.017732 B = 0.003601 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.729351 B = 7772.923668 C = 8490.394130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.519 3.481 4 O -0.508 6.508 5 C -0.177 4.177 6 C 0.070 3.930 7 C -0.742 4.742 8 S 2.704 3.296 9 O -0.986 6.986 10 O -0.974 6.974 11 N -1.097 6.097 12 C 0.261 3.739 13 H 0.040 0.960 14 C -0.147 4.147 15 C -0.544 4.544 16 H 0.065 0.935 17 C 0.018 3.982 18 N -0.909 5.909 19 Si 0.962 3.038 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.271 1.271 23 C 0.224 3.776 24 F -0.115 7.115 25 C -0.183 4.183 26 C 0.066 3.934 27 C -0.127 4.127 28 H 0.131 0.869 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.177 0.823 32 H 0.420 0.580 33 H 0.037 0.963 34 H 0.030 0.970 35 H 0.073 0.927 36 H 0.265 0.735 37 H 0.181 0.819 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.033 3.133 4.612 19.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.365 3.635 4 O -0.399 6.399 5 C -0.179 4.179 6 C 0.051 3.949 7 C -0.830 4.830 8 S 2.793 3.207 9 O -0.976 6.976 10 O -0.964 6.964 11 N -0.859 5.859 12 C 0.156 3.844 13 H 0.058 0.942 14 C -0.207 4.207 15 C -0.583 4.583 16 H 0.084 0.916 17 C -0.182 4.182 18 N -0.548 5.548 19 Si 0.787 3.213 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.196 1.196 23 C 0.203 3.797 24 F -0.093 7.093 25 C -0.202 4.202 26 C 0.065 3.935 27 C -0.182 4.182 28 H 0.149 0.851 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.194 0.806 32 H 0.256 0.744 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.198 0.802 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.028 3.019 5.363 19.998 hybrid contribution 0.892 0.135 -1.054 1.387 sum -18.136 3.155 4.309 18.906 Atomic orbital electron populations 1.23655 0.73544 1.06033 1.03127 1.86566 1.25870 1.31545 1.83733 1.20706 0.88162 0.81959 0.72671 1.90787 1.66857 1.35672 1.46568 1.19159 0.90352 0.94433 1.13947 1.21219 0.89596 1.00283 0.83844 1.30917 1.08957 1.18218 1.24871 1.01307 0.72774 0.73269 0.73323 1.93566 1.59788 1.86876 1.57405 1.93517 1.64513 1.51815 1.86594 1.55342 1.52086 1.45077 1.33351 1.18642 0.84885 0.83772 0.97063 0.94228 1.22261 0.99126 1.00370 0.98907 1.21585 1.04900 0.99529 1.32324 0.91639 1.25658 1.00259 0.95146 0.97156 1.69988 1.31661 1.07584 1.45561 0.85505 0.78372 0.78498 0.78926 1.19794 1.21007 1.19565 1.17691 0.77328 0.94167 0.90509 1.91742 1.28699 1.96945 1.91902 1.21386 0.93417 0.98479 1.06910 1.20403 0.92738 0.95372 0.84939 1.21347 1.00075 0.92013 1.04809 0.85112 0.91143 0.91324 0.80620 0.74445 0.94423 0.95174 0.90812 0.92544 0.80157 0.88505 0.88517 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.57 113.37 1.20 1.56 16 2 O -0.36 -7.26 9.83 -56.36 -0.55 -7.82 16 3 C 0.52 11.82 7.82 70.30 0.55 12.37 16 4 O -0.51 -12.02 13.13 19.89 0.26 -11.76 16 5 C -0.18 -4.35 5.87 -20.10 -0.12 -4.46 16 6 C 0.07 1.91 9.11 22.53 0.21 2.12 16 7 C -0.74 -24.39 5.72 22.27 0.13 -24.27 16 8 S 2.70 103.53 5.46 -56.49 -0.31 103.23 16 9 O -0.99 -45.11 16.76 -128.00 -2.14 -47.25 16 10 O -0.97 -36.38 16.96 -128.00 -2.17 -38.55 16 11 N -1.10 -44.64 5.46 -172.53 -0.94 -45.59 16 12 C 0.26 12.68 2.13 44.25 0.09 12.77 16 13 H 0.04 2.15 5.56 -2.39 -0.01 2.14 16 14 C -0.15 -6.62 8.39 71.98 0.60 -6.02 16 15 C -0.54 -28.77 8.76 25.60 0.22 -28.55 16 16 H 0.07 3.35 7.81 -2.91 -0.02 3.33 16 17 C 0.02 0.97 5.30 84.65 0.45 1.42 16 18 N -0.91 -49.94 11.32 21.45 0.24 -49.70 16 19 Si 0.96 42.19 29.54 68.60 2.03 44.22 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 C 0.22 7.43 4.75 22.48 0.11 7.53 16 24 F -0.12 -4.64 11.67 44.97 0.52 -4.11 16 25 C -0.18 -4.61 9.64 22.27 0.21 -4.40 16 26 C 0.07 1.50 5.91 -19.61 -0.12 1.38 16 27 C -0.13 -2.12 8.73 71.24 0.62 -1.50 16 28 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.18 4.31 6.89 -2.91 -0.02 4.29 16 32 H 0.42 15.18 8.83 -96.74 -0.85 14.32 16 33 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 34 H 0.03 1.17 4.34 -2.39 -0.01 1.16 16 35 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 36 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 37 H 0.18 3.53 8.05 -2.91 -0.02 3.51 16 38 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.10 1.75 5.86 -2.39 -0.01 1.74 16 40 H 0.10 1.16 8.04 -2.38 -0.02 1.14 16 Total: -1.00 -68.25 344.61 1.36 -66.89 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.26 Total: 20.48 kcal Atomic # 6 Polarization: -34.20 SS G_CDS: 4.16 Total: -30.04 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -0.70 Total: -95.28 kcal Atomic # 8 Polarization: -100.77 SS G_CDS: -4.61 Total: -105.38 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.52 Total: -4.11 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 103.53 SS G_CDS: -0.31 Total: 103.23 kcal Total: -68.25 1.36 -66.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293477475.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.909 kcal (2) G-P(sol) polarization free energy of solvation -68.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds