Wall clock time and date at job start Wed Apr 1 2020 03:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34728 * 117.00133 * 2 1 4 4 O 1.21495 * 119.99927 * 0.02562 * 3 2 1 5 5 C 1.47592 * 120.00242 * 180.02562 * 3 2 1 6 6 C 1.39730 * 120.12079 * 357.06070 * 5 3 2 7 7 C 1.37793 * 119.87375 * 179.97438 * 6 5 3 8 8 S 1.76205 * 119.93984 * 179.97438 * 7 6 5 9 9 O 1.42100 * 106.39717 * 359.87148 * 8 7 6 10 10 O 1.42095 * 106.40110 * 226.95673 * 8 7 6 11 11 N 1.65594 * 107.22311 * 113.41124 * 8 7 6 12 12 C 1.46500 * 120.00067 * 294.36887 * 11 8 7 13 13 H 1.08997 * 109.46907 * 338.27936 * 12 11 8 14 14 C 1.53004 * 109.46972 * 98.28379 * 12 11 8 15 15 C 1.50700 * 109.46964 * 218.28108 * 12 11 8 16 16 H 1.08006 * 120.00052 * 0.02562 * 15 12 11 17 17 C 1.37876 * 119.99985 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99972 * 179.97438 * 17 15 12 19 19 Si 1.86799 * 120.00019 * 0.02562 * 17 15 12 20 20 H 1.48502 * 109.46980 * 90.00112 * 19 17 15 21 21 H 1.48497 * 109.46843 * 209.99765 * 19 17 15 22 22 H 1.48499 * 109.47172 * 329.99982 * 19 17 15 23 23 C 1.38691 * 120.12779 * 0.24540 * 7 6 5 24 24 F 1.35098 * 119.88214 * 179.75102 * 23 7 6 25 25 C 1.38654 * 120.24312 * 359.49808 * 23 7 6 26 26 C 1.37832 * 120.12616 * 0.50688 * 25 23 7 27 27 C 1.50705 * 120.06514 * 179.76932 * 26 25 23 28 28 H 1.08997 * 109.47374 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47412 * 300.00097 * 1 2 3 30 30 H 1.08998 * 109.47190 * 59.99861 * 1 2 3 31 31 H 1.07995 * 120.06271 * 359.95533 * 6 5 3 32 32 H 0.97000 * 119.99607 * 114.36207 * 11 8 7 33 33 H 1.08992 * 109.47258 * 59.99829 * 14 12 11 34 34 H 1.08995 * 109.47051 * 299.99534 * 14 12 11 35 35 H 1.09002 * 109.46823 * 179.97438 * 14 12 11 36 36 H 0.96995 * 119.99991 * 179.97438 * 18 17 15 37 37 H 1.08001 * 119.93524 * 180.27716 * 25 23 7 38 38 H 1.08998 * 109.46816 * 262.93660 * 27 26 25 39 39 H 1.09002 * 109.46963 * 22.93124 * 27 26 25 40 40 H 1.09002 * 109.47005 * 142.93202 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4020 2.2194 0.0005 5 6 3.5376 1.2777 -0.0006 6 6 4.3010 0.1090 0.0609 7 6 5.6767 0.1871 0.0595 8 16 6.6412 -1.2855 0.1376 9 8 5.7199 -2.3659 0.1948 10 8 7.6375 -1.0607 1.1255 11 7 7.4383 -1.4268 -1.3070 12 6 6.6824 -1.6486 -2.5421 13 1 5.7063 -2.0689 -2.3001 14 6 6.4975 -0.3172 -3.2730 15 6 7.4366 -2.6070 -3.4274 16 1 8.3841 -3.0109 -3.1022 17 6 6.9166 -2.9692 -4.6519 18 7 7.5750 -3.8052 -5.4247 19 14 5.2776 -2.2712 -5.2139 20 1 5.5075 -1.0099 -5.9633 21 1 4.5974 -3.2538 -6.0955 22 1 4.4249 -1.9952 -4.0299 23 6 6.3038 1.4228 0.0024 24 9 7.6529 1.4938 0.0064 25 6 5.5513 2.5854 -0.0640 26 6 4.1745 2.5193 -0.0632 27 6 3.3579 3.7842 -0.1302 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.8138 -0.8535 0.1096 32 1 8.4058 -1.3625 -1.3353 33 1 7.4736 0.1031 -3.5149 34 1 5.9520 0.3760 -2.6327 35 1 5.9354 -0.4823 -4.1922 36 1 7.2091 -4.0602 -6.2859 37 1 6.0448 3.5448 -0.1128 38 1 3.0530 4.0734 0.8755 39 1 3.9573 4.5806 -0.5713 40 1 2.4730 3.6132 -0.7433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293477480.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:13 Heat of formation + Delta-G solvation = -164.582505 kcal Electronic energy + Delta-G solvation = -29264.793292 eV Core-core repulsion = 24894.145864 eV Total energy + Delta-G solvation = -4370.647428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.43489 -41.00393 -39.10281 -36.94326 -36.75243 -35.81913 -35.56076 -33.24215 -32.28087 -31.63494 -29.34613 -28.41812 -27.44945 -25.23065 -24.30665 -22.69808 -21.64376 -21.14358 -19.46214 -18.45933 -17.86811 -17.56226 -17.45966 -16.81027 -16.67341 -16.27902 -15.93762 -15.85781 -15.56197 -14.78662 -14.53566 -14.25752 -14.15069 -13.85879 -13.67505 -13.24179 -13.20495 -13.20072 -12.58874 -12.50713 -12.46376 -12.34706 -12.20277 -12.16068 -11.98924 -11.77020 -11.71176 -11.29161 -11.06877 -10.93908 -10.75808 -10.44240 -10.28428 -9.71723 -9.56821 -9.48539 -9.29472 -8.90117 -8.57784 -6.21612 -4.23645 0.06982 0.49671 0.71672 2.01021 2.36555 3.01525 3.16303 3.26733 3.30092 3.39536 3.62127 3.92497 4.09967 4.26333 4.28570 4.41307 4.72867 4.85397 4.88074 4.93983 5.04159 5.09970 5.13538 5.26493 5.36103 5.41766 5.44203 5.45997 5.74414 5.84448 5.85754 6.08480 6.13853 6.24876 6.30192 6.36033 6.81924 7.10446 7.37935 7.41604 7.75438 8.35683 8.81253 9.36802 10.90963 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010190 B = 0.004958 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.187193 B = 5646.020914 C = 6785.417277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.351 6.351 3 C 0.516 3.484 4 O -0.502 6.502 5 C -0.170 4.170 6 C 0.071 3.929 7 C -0.732 4.732 8 S 2.689 3.311 9 O -0.947 6.947 10 O -0.961 6.961 11 N -1.085 6.085 12 C 0.240 3.760 13 H 0.052 0.948 14 C -0.173 4.173 15 C -0.523 4.523 16 H 0.085 0.915 17 C 0.077 3.923 18 N -0.890 5.890 19 Si 0.879 3.121 20 H -0.276 1.276 21 H -0.291 1.291 22 H -0.263 1.263 23 C 0.243 3.757 24 F -0.109 7.109 25 C -0.190 4.190 26 C 0.057 3.943 27 C -0.132 4.132 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.169 0.831 32 H 0.418 0.582 33 H 0.063 0.937 34 H 0.028 0.972 35 H 0.052 0.948 36 H 0.267 0.733 37 H 0.155 0.845 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.580 13.784 10.670 20.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.267 6.267 3 C 0.362 3.638 4 O -0.392 6.392 5 C -0.172 4.172 6 C 0.052 3.948 7 C -0.815 4.815 8 S 2.773 3.227 9 O -0.937 6.937 10 O -0.951 6.951 11 N -0.847 5.847 12 C 0.134 3.866 13 H 0.070 0.930 14 C -0.232 4.232 15 C -0.562 4.562 16 H 0.103 0.897 17 C -0.127 4.127 18 N -0.527 5.527 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.219 1.219 22 H -0.188 1.188 23 C 0.222 3.778 24 F -0.087 7.087 25 C -0.209 4.209 26 C 0.057 3.943 27 C -0.188 4.188 28 H 0.124 0.876 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.186 0.814 32 H 0.253 0.747 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.172 0.828 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.940 13.416 11.208 20.623 hybrid contribution -0.585 1.111 -0.902 1.546 sum -11.525 14.527 10.306 21.215 Atomic orbital electron populations 1.23336 0.75438 1.04209 1.02616 1.86591 1.23976 1.32130 1.83967 1.20866 0.88544 0.81692 0.72710 1.90780 1.66808 1.35342 1.46274 1.19013 0.89856 0.94265 1.14090 1.21212 0.90628 0.99677 0.83316 1.31440 1.08628 1.19240 1.22186 1.02165 0.73552 0.73656 0.73287 1.93595 1.65089 1.48775 1.86274 1.93585 1.57882 1.86139 1.57530 1.55259 1.18349 1.87766 1.23302 1.19016 0.92838 0.93060 0.81680 0.93019 1.22675 1.01471 0.98997 1.00026 1.21005 1.08271 1.25785 1.01163 0.89654 1.24878 0.97022 0.94603 0.96184 1.69856 1.38536 1.33241 1.11067 0.86993 0.84667 0.78239 0.79266 1.20284 1.21859 1.18777 1.17285 0.77140 0.93090 0.90304 1.91651 1.28024 1.97032 1.91961 1.21038 0.93219 0.98224 1.08451 1.20072 0.92965 0.94685 0.86603 1.21318 1.00603 0.92474 1.04417 0.87610 0.91698 0.91642 0.81356 0.74678 0.91786 0.95338 0.92921 0.92253 0.82757 0.89393 0.91049 0.87794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.35 -4.18 9.82 -40.57 -0.40 -4.57 16 3 C 0.52 6.53 7.85 34.55 0.27 6.80 16 4 O -0.50 -6.50 13.07 -19.26 -0.25 -6.75 16 5 C -0.17 -2.20 5.87 -104.98 -0.62 -2.81 16 6 C 0.07 1.01 9.11 -39.19 -0.36 0.65 16 7 C -0.73 -11.21 5.10 -39.58 -0.20 -11.41 16 8 S 2.69 48.19 5.39 -107.50 -0.58 47.61 16 9 O -0.95 -19.01 16.28 -57.17 -0.93 -19.94 16 10 O -0.96 -18.32 17.32 -57.17 -0.99 -19.31 16 11 N -1.08 -20.64 5.44 -5.88 -0.03 -20.67 16 12 C 0.24 5.29 2.51 -69.08 -0.17 5.12 16 13 H 0.05 1.17 6.53 -51.93 -0.34 0.84 16 14 C -0.17 -3.43 9.00 37.16 0.33 -3.10 16 15 C -0.52 -13.80 9.36 -34.44 -0.32 -14.12 16 16 H 0.09 2.41 8.06 -52.48 -0.42 1.99 16 17 C 0.08 2.10 5.45 -17.82 -0.10 2.01 16 18 N -0.89 -25.96 13.96 55.43 0.77 -25.18 16 19 Si 0.88 20.62 24.37 -169.99 -4.14 16.48 16 20 H -0.28 -6.23 6.87 56.52 0.39 -5.84 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.26 -5.84 6.53 56.52 0.37 -5.47 16 23 C 0.24 3.37 7.06 -39.26 -0.28 3.09 16 24 F -0.11 -1.56 16.19 2.25 0.04 -1.53 16 25 C -0.19 -2.12 9.64 -39.58 -0.38 -2.51 16 26 C 0.06 0.65 5.91 -104.23 -0.62 0.03 16 27 C -0.13 -1.19 8.76 36.01 0.32 -0.87 16 28 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.17 2.30 6.88 -52.49 -0.36 1.94 16 32 H 0.42 7.29 8.86 -34.46 -0.31 6.99 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.03 0.48 7.17 -51.93 -0.37 0.11 16 35 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.15 1.25 8.05 -52.49 -0.42 0.83 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.49 8.03 -51.93 -0.42 0.07 16 40 H 0.10 1.07 5.79 -51.93 -0.30 0.77 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -32.56 350.15 -6.70 -39.26 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -4.40 Total: 5.08 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -1.05 Total: -15.75 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.74 Total: -45.85 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -2.57 Total: -50.58 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.14 Total: 16.48 kcal Atomic # 16 Polarization: 48.19 SS G_CDS: -0.58 Total: 47.61 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.56 -6.70 -39.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293477480.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.324 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds