Wall clock time and date at job start Wed Apr 1 2020 03:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00201 * 2 1 4 4 H 1.48500 * 109.47071 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47382 * 120.00096 * 3 2 1 6 6 H 1.48503 * 109.47122 * 240.00129 * 3 2 1 7 7 C 1.37875 * 119.99959 * 180.27375 * 2 1 3 8 8 H 1.08005 * 120.00202 * 179.71939 * 7 2 1 9 9 C 1.50696 * 120.00214 * 359.72723 * 7 2 1 10 10 N 1.46499 * 109.47545 * 179.97438 * 9 7 2 11 11 C 1.34973 * 125.97547 * 124.71611 * 10 9 7 12 12 C 1.35237 * 107.86405 * 179.83948 * 11 10 9 13 13 C 1.40423 * 107.86497 * 0.42158 * 12 11 10 14 14 N 1.40090 * 125.97541 * 179.72190 * 13 12 11 15 15 C 1.34770 * 119.99918 * 359.97438 * 14 13 12 16 16 O 1.21762 * 120.00132 * 0.02562 * 15 14 13 17 17 C 1.46202 * 120.00416 * 180.02562 * 15 14 13 18 18 S 1.75822 * 125.47215 * 353.40445 * 17 15 14 19 19 C 1.70582 * 91.67057 * 179.90982 * 18 17 15 20 20 C 1.33590 * 111.16598 * 0.35892 * 19 18 17 21 21 C 1.37331 * 125.48329 * 173.70699 * 17 15 14 22 22 N 1.39993 * 123.48464 * 359.96873 * 21 17 15 23 23 C 1.35113 * 127.39373 * 186.11970 * 22 21 17 24 24 N 1.30736 * 107.26216 * 179.97438 * 23 22 21 25 25 N 1.28417 * 110.65700 * 359.97438 * 24 23 22 26 26 N 1.28953 * 110.20742 * 359.71021 * 25 24 23 27 27 N 1.31230 * 108.05171 * 359.73444 * 13 12 11 28 28 H 0.96997 * 119.99631 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46982 * 299.99857 * 9 7 2 30 30 H 1.09002 * 109.47587 * 59.99541 * 9 7 2 31 31 H 1.08000 * 126.06710 * 359.97438 * 11 10 9 32 32 H 1.07999 * 126.06714 * 180.15908 * 12 11 10 33 33 H 0.96998 * 119.99670 * 180.02562 * 14 13 12 34 34 H 1.07996 * 124.41226 * 180.02562 * 19 18 17 35 35 H 1.07999 * 122.45754 * 179.70655 * 20 19 18 36 36 H 1.07998 * 126.36899 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7465 -0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1030 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0846 -1.1941 -0.0103 9 6 1.2511 -2.4991 -0.0057 10 7 2.2030 -3.6127 -0.0129 11 6 2.2495 -4.6219 0.8821 12 6 3.2628 -5.4443 0.5277 13 6 3.8663 -4.9131 -0.6236 14 7 4.9589 -5.4614 -1.3076 15 6 5.5258 -6.6022 -0.8676 16 8 5.0880 -7.1565 0.1242 17 6 6.6665 -7.1743 -1.5811 18 16 7.3098 -6.5920 -3.1103 19 6 8.5186 -7.7955 -3.1173 20 6 8.4254 -8.5791 -2.0393 21 6 7.4041 -8.2564 -1.1677 22 7 7.1477 -8.9594 0.0155 23 6 7.8847 -9.9554 0.5543 24 7 7.2882 -10.3266 1.6568 25 7 6.2251 -9.6333 1.8522 26 7 6.0719 -8.7752 0.9019 27 7 3.2279 -3.8129 -0.9465 28 1 -0.4849 -0.8400 0.0004 29 1 0.6281 -2.5590 0.8868 30 1 0.6207 -2.5548 -0.8932 31 1 1.5924 -4.7510 1.7294 32 1 3.5585 -6.3470 1.0417 33 1 5.3079 -5.0197 -2.0975 34 1 9.2590 -7.9124 -3.8948 35 1 9.0992 -9.4044 -1.8627 36 1 8.7973 -10.3676 0.1499 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344281126.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:11 Heat of formation + Delta-G solvation = 240.904344 kcal Electronic energy + Delta-G solvation = -26211.183954 eV Core-core repulsion = 22249.934138 eV Total energy + Delta-G solvation = -3961.249816 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.30285 -40.84507 -39.80506 -38.50086 -34.96762 -34.32025 -33.71197 -32.38027 -31.29199 -30.11569 -29.40836 -26.89867 -26.03832 -24.14726 -23.64729 -22.81285 -22.12313 -20.91013 -20.42079 -19.97893 -18.72689 -17.47061 -17.20507 -16.84086 -16.61659 -16.19774 -16.07002 -15.44131 -15.11311 -15.04331 -14.54139 -14.24340 -13.81878 -13.75145 -13.43497 -13.16825 -12.83460 -12.47930 -12.43986 -12.27426 -11.92521 -11.88389 -11.78692 -11.20653 -11.14783 -10.83931 -10.63324 -10.46753 -10.17550 -10.03793 -9.58834 -9.51023 -9.04334 -9.01370 -8.59673 -8.24587 -7.56301 -6.59576 -4.33742 -0.42645 0.54542 0.69749 1.03369 1.69289 1.77990 2.17353 2.50361 2.51753 2.92674 3.36639 3.37960 3.56650 3.64544 3.65922 3.77499 3.80949 4.22601 4.39440 4.43413 4.52212 4.79209 4.94897 5.09928 5.14195 5.24922 5.37308 5.48243 5.66294 6.03784 6.13259 6.39023 6.45705 6.58621 6.73359 7.22290 7.41751 7.66710 7.80616 8.04980 8.32143 8.32493 8.49349 8.59659 9.34499 10.78065 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.016196 B = 0.002607 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.358616 B =10738.239756 C =11928.996096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.023 3.977 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.608 4.608 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.316 5.316 11 C 0.052 3.948 12 C -0.281 4.281 13 C 0.260 3.740 14 N -0.625 5.625 15 C 0.574 3.426 16 O -0.450 6.450 17 C -0.256 4.256 18 S 0.286 5.714 19 C -0.213 4.213 20 C -0.152 4.152 21 C 0.187 3.813 22 N -0.328 5.328 23 C 0.214 3.786 24 N -0.331 5.331 25 N -0.063 5.063 26 N 0.025 4.975 27 N -0.300 5.300 28 H 0.267 0.733 29 H 0.047 0.953 30 H 0.035 0.965 31 H 0.169 0.831 32 H 0.165 0.835 33 H 0.405 0.595 34 H 0.186 0.814 35 H 0.159 0.841 36 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.356 -18.681 -8.653 28.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.903 3.097 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.647 4.647 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.098 5.098 11 C -0.097 4.097 12 C -0.312 4.312 13 C 0.007 3.993 14 N -0.273 5.273 15 C 0.357 3.643 16 O -0.318 6.318 17 C -0.381 4.381 18 S 0.554 5.446 19 C -0.352 4.352 20 C -0.185 4.185 21 C 0.077 3.923 22 N -0.120 5.120 23 C -0.084 4.084 24 N -0.177 5.177 25 N -0.059 5.059 26 N 0.038 4.962 27 N -0.131 5.131 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.186 0.814 32 H 0.182 0.818 33 H 0.240 0.760 34 H 0.203 0.797 35 H 0.177 0.823 36 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 18.237 -15.180 -8.683 25.267 hybrid contribution 1.639 -3.214 0.197 3.613 sum 19.876 -18.394 -8.485 28.380 Atomic orbital electron populations 1.70851 1.06779 1.30453 1.45889 1.25923 0.96312 1.02800 0.93128 0.83422 0.74818 0.74576 0.76834 1.20503 1.21224 1.21143 1.22100 0.95371 0.90437 1.56766 0.91844 1.19775 0.86292 0.82785 0.98043 1.48798 1.23302 1.19525 1.18126 1.22581 1.00450 0.90027 0.96682 1.21579 1.02017 1.06327 1.01282 1.18947 0.91265 0.94373 0.94723 1.42168 1.30425 1.24575 1.30165 1.16619 0.82281 0.80551 0.84809 1.91050 1.59802 1.58076 1.22918 1.24420 1.05633 1.03931 1.04066 1.83480 1.20377 1.27662 1.13118 1.25172 1.05621 1.01115 1.03264 1.19468 1.00024 1.04432 0.94572 1.16660 0.96928 0.92697 0.86028 1.48976 1.19562 1.25677 1.17754 1.27494 0.99702 0.89255 0.91938 1.74444 1.04607 1.23686 1.14964 1.78239 1.09321 1.01117 1.17232 1.84071 1.01833 1.14614 0.95659 1.77342 1.03577 1.16053 1.16121 0.92249 0.93546 0.94734 0.81372 0.81818 0.75988 0.79657 0.82320 0.74898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.30 13.65 55.43 0.76 -25.54 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 3 Si 1.08 24.81 29.90 -169.99 -5.08 19.73 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.61 -17.08 9.24 -34.44 -0.32 -17.40 16 8 H 0.06 1.86 7.81 -52.48 -0.41 1.45 16 9 C 0.25 6.30 5.57 -5.20 -0.03 6.27 16 10 N -0.32 -7.38 3.67 -62.56 -0.23 -7.61 16 11 C 0.05 1.06 11.44 -17.24 -0.20 0.86 16 12 C -0.28 -5.63 9.60 -39.83 -0.38 -6.01 16 13 C 0.26 5.21 8.11 -154.44 -1.25 3.95 16 14 N -0.63 -9.67 5.44 -12.45 -0.07 -9.74 16 15 C 0.57 8.42 7.73 -13.07 -0.10 8.32 16 16 O -0.45 -7.93 9.46 5.13 0.05 -7.88 16 17 C -0.26 -2.63 6.45 -36.72 -0.24 -2.87 16 18 S 0.29 1.63 22.16 -107.50 -2.38 -0.76 16 19 C -0.21 -0.72 10.90 29.10 0.32 -0.40 16 20 C -0.15 -0.70 9.63 -41.26 -0.40 -1.09 16 21 C 0.19 1.69 6.75 -84.51 -0.57 1.12 16 22 N -0.33 -3.72 3.85 -12.33 -0.05 -3.77 16 23 C 0.21 1.85 12.32 -90.11 -1.11 0.74 16 24 N -0.33 -4.23 12.15 29.65 0.36 -3.87 16 25 N -0.06 -1.00 13.39 60.35 0.81 -0.20 16 26 N 0.02 0.39 9.27 60.35 0.56 0.95 16 27 N -0.30 -6.90 12.42 31.43 0.39 -6.51 16 28 H 0.27 7.60 7.22 -40.82 -0.29 7.31 16 29 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 30 H 0.03 0.91 8.00 -51.93 -0.42 0.49 16 31 H 0.17 2.80 8.06 -52.49 -0.42 2.38 16 32 H 0.16 3.23 5.90 -52.49 -0.31 2.92 16 33 H 0.41 5.09 7.95 -40.82 -0.32 4.77 16 34 H 0.19 0.03 8.06 -52.49 -0.42 -0.40 16 35 H 0.16 0.18 7.50 -52.49 -0.39 -0.21 16 36 H 0.24 0.50 7.61 -52.49 -0.40 0.10 16 LS Contribution 335.93 15.07 5.06 5.06 Total: -1.00 -37.62 335.93 -6.80 -44.42 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -2.60 Total: 1.67 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -4.37 Total: -5.96 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: 2.53 Total: -56.27 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.05 Total: -7.88 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.08 Total: 19.73 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.38 Total: -0.76 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -37.62 -6.80 -44.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344281126.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 285.323 kcal (2) G-P(sol) polarization free energy of solvation -37.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 247.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 240.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds