Wall clock time and date at job start Wed Apr 1 2020 03:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00201 * 2 1 4 4 H 1.48500 * 109.47071 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47382 * 120.00096 * 3 2 1 6 6 H 1.48503 * 109.47122 * 240.00129 * 3 2 1 7 7 C 1.37875 * 119.99959 * 180.27375 * 2 1 3 8 8 H 1.08005 * 120.00202 * 179.71939 * 7 2 1 9 9 C 1.50696 * 120.00214 * 359.72723 * 7 2 1 10 10 N 1.46499 * 109.47545 * 179.97438 * 9 7 2 11 11 C 1.34973 * 125.97547 * 124.71611 * 10 9 7 12 12 C 1.35237 * 107.86405 * 179.83948 * 11 10 9 13 13 C 1.40423 * 107.86497 * 0.42158 * 12 11 10 14 14 N 1.40090 * 125.97541 * 179.72190 * 13 12 11 15 15 C 1.34770 * 119.99918 * 359.97438 * 14 13 12 16 16 O 1.21762 * 120.00132 * 0.02562 * 15 14 13 17 17 C 1.46202 * 120.00416 * 180.02562 * 15 14 13 18 18 S 1.75822 * 125.47215 * 353.40445 * 17 15 14 19 19 C 1.70582 * 91.67057 * 179.90982 * 18 17 15 20 20 C 1.33590 * 111.16598 * 0.35892 * 19 18 17 21 21 C 1.37331 * 125.48329 * 173.70699 * 17 15 14 22 22 N 1.39993 * 123.48464 * 359.96873 * 21 17 15 23 23 C 1.35113 * 127.39373 * 186.11970 * 22 21 17 24 24 N 1.30736 * 107.26216 * 179.97438 * 23 22 21 25 25 N 1.28417 * 110.65700 * 359.97438 * 24 23 22 26 26 N 1.28953 * 110.20742 * 359.71021 * 25 24 23 27 27 N 1.31230 * 108.05171 * 359.73444 * 13 12 11 28 28 H 0.96997 * 119.99631 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46982 * 299.99857 * 9 7 2 30 30 H 1.09002 * 109.47587 * 59.99541 * 9 7 2 31 31 H 1.08000 * 126.06710 * 359.97438 * 11 10 9 32 32 H 1.07999 * 126.06714 * 180.15908 * 12 11 10 33 33 H 0.96998 * 119.99670 * 180.02562 * 14 13 12 34 34 H 1.07996 * 124.41226 * 180.02562 * 19 18 17 35 35 H 1.07999 * 122.45754 * 179.70655 * 20 19 18 36 36 H 1.07998 * 126.36899 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7465 -0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1030 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0846 -1.1941 -0.0103 9 6 1.2511 -2.4991 -0.0057 10 7 2.2030 -3.6127 -0.0129 11 6 2.2495 -4.6219 0.8821 12 6 3.2628 -5.4443 0.5277 13 6 3.8663 -4.9131 -0.6236 14 7 4.9589 -5.4614 -1.3076 15 6 5.5258 -6.6022 -0.8676 16 8 5.0880 -7.1565 0.1242 17 6 6.6665 -7.1743 -1.5811 18 16 7.3098 -6.5920 -3.1103 19 6 8.5186 -7.7955 -3.1173 20 6 8.4254 -8.5791 -2.0393 21 6 7.4041 -8.2564 -1.1677 22 7 7.1477 -8.9594 0.0155 23 6 7.8847 -9.9554 0.5543 24 7 7.2882 -10.3266 1.6568 25 7 6.2251 -9.6333 1.8522 26 7 6.0719 -8.7752 0.9019 27 7 3.2279 -3.8129 -0.9465 28 1 -0.4849 -0.8400 0.0004 29 1 0.6281 -2.5590 0.8868 30 1 0.6207 -2.5548 -0.8932 31 1 1.5924 -4.7510 1.7294 32 1 3.5585 -6.3470 1.0417 33 1 5.3079 -5.0197 -2.0975 34 1 9.2590 -7.9124 -3.8948 35 1 9.0992 -9.4044 -1.8627 36 1 8.7973 -10.3676 0.1499 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344281126.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:10 Heat of formation + Delta-G solvation = 214.383574 kcal Electronic energy + Delta-G solvation = -26212.333981 eV Core-core repulsion = 22249.934138 eV Total energy + Delta-G solvation = -3962.399842 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.16764 -42.35668 -40.88148 -39.30934 -36.46014 -35.60229 -35.04860 -33.27086 -32.91720 -31.14362 -30.92184 -28.34109 -27.26689 -25.28896 -24.77285 -24.17592 -23.03251 -22.39640 -21.39540 -21.11931 -19.76757 -19.24171 -18.44086 -17.81352 -17.69957 -17.10231 -16.96306 -16.75493 -16.39851 -15.88692 -15.66172 -15.54977 -15.34418 -15.00287 -14.62215 -14.15622 -14.11467 -13.95479 -13.76343 -13.49568 -13.27314 -13.24579 -12.62843 -12.58487 -12.36181 -12.09429 -12.00145 -11.96124 -11.67679 -11.48545 -11.03052 -10.71820 -10.67743 -10.12844 -9.88690 -9.55222 -9.24971 -8.79715 -6.57816 -1.08682 -0.00838 0.07473 0.64469 0.86739 0.99610 1.14901 1.20995 1.36197 1.50202 1.56713 1.68133 1.78452 2.17341 2.24395 2.47995 2.99653 3.08847 3.32763 3.46652 3.71938 3.85458 4.07548 4.11385 4.17364 4.34234 4.52821 4.60727 4.65580 4.74062 4.78662 4.84148 4.90525 5.07104 5.44739 5.52836 5.75848 5.88392 6.07674 6.23253 6.38717 6.84578 6.95815 7.18118 7.41738 8.56652 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.016196 B = 0.002607 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.358616 B =10738.239756 C =11928.996096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.019 4.019 3 Si 1.120 2.880 4 H -0.275 1.275 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.623 4.623 8 H 0.046 0.954 9 C 0.260 3.740 10 N -0.341 5.341 11 C 0.056 3.944 12 C -0.289 4.289 13 C 0.272 3.728 14 N -0.623 5.623 15 C 0.569 3.431 16 O -0.485 6.485 17 C -0.310 4.310 18 S 0.317 5.683 19 C -0.178 4.178 20 C -0.153 4.153 21 C 0.184 3.816 22 N -0.332 5.332 23 C 0.241 3.759 24 N -0.362 5.362 25 N -0.097 5.097 26 N -0.024 5.024 27 N -0.340 5.340 28 H 0.261 0.739 29 H 0.053 0.947 30 H 0.018 0.982 31 H 0.200 0.800 32 H 0.166 0.834 33 H 0.417 0.583 34 H 0.232 0.768 35 H 0.204 0.796 36 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.309 -19.868 -10.705 33.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.218 4.218 3 Si 0.941 3.059 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.660 4.660 8 H 0.064 0.936 9 C 0.140 3.860 10 N -0.123 5.123 11 C -0.092 4.092 12 C -0.320 4.320 13 C 0.017 3.983 14 N -0.273 5.273 15 C 0.356 3.644 16 O -0.356 6.356 17 C -0.434 4.434 18 S 0.584 5.416 19 C -0.317 4.317 20 C -0.184 4.184 21 C 0.073 3.927 22 N -0.123 5.123 23 C -0.056 4.056 24 N -0.209 5.209 25 N -0.093 5.093 26 N -0.011 5.011 27 N -0.171 5.171 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.036 0.964 31 H 0.217 0.783 32 H 0.184 0.816 33 H 0.254 0.746 34 H 0.248 0.752 35 H 0.221 0.779 36 H 0.316 0.684 Dipole moment (debyes) X Y Z Total from point charges 22.213 -16.393 -10.768 29.633 hybrid contribution 0.622 -3.031 0.693 3.171 sum 22.835 -19.425 -10.074 31.627 Atomic orbital electron populations 1.70946 1.07474 1.30179 1.47281 1.27305 0.96424 1.06098 0.91999 0.82881 0.74154 0.71040 0.77853 1.19944 1.19753 1.19808 1.22285 0.94702 0.92078 1.56981 0.93597 1.19440 0.86390 0.82750 0.97393 1.48582 1.24048 1.20103 1.19570 1.23144 1.00580 0.88814 0.96682 1.21721 1.02206 1.06430 1.01597 1.19274 0.91422 0.93157 0.94403 1.42329 1.29387 1.25128 1.30450 1.17325 0.82880 0.79568 0.84579 1.91039 1.61184 1.58732 1.24605 1.24145 1.05961 1.06163 1.07110 1.83459 1.20469 1.27926 1.09697 1.25783 1.04295 0.98398 1.03207 1.19845 0.99191 1.05846 0.93486 1.17352 0.97771 0.92027 0.85595 1.49076 1.18901 1.26273 1.18061 1.28664 0.99910 0.87038 0.89974 1.74322 1.04675 1.24596 1.17344 1.78217 1.10916 1.01983 1.18151 1.84015 1.04472 1.15680 0.96907 1.77256 1.04719 1.17887 1.17271 0.92983 0.92927 0.96402 0.78295 0.81625 0.74576 0.75165 0.77891 0.68401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.43 13.65 21.45 0.29 -54.13 16 2 C -0.02 -1.05 5.46 84.65 0.46 -0.59 16 3 Si 1.12 49.87 29.90 68.60 2.05 51.92 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.62 -35.85 9.24 25.60 0.24 -35.61 16 8 H 0.05 2.76 7.81 -2.91 -0.02 2.73 16 9 C 0.26 13.62 5.57 85.63 0.48 14.10 16 10 N -0.34 -16.53 3.67 -351.84 -1.29 -17.82 16 11 C 0.06 2.33 11.44 83.52 0.96 3.28 16 12 C -0.29 -12.02 9.60 22.11 0.21 -11.80 16 13 C 0.27 11.31 8.11 133.35 1.08 12.39 16 14 N -0.62 -19.87 5.44 -311.49 -1.69 -21.56 16 15 C 0.57 17.21 7.73 86.31 0.67 17.88 16 16 O -0.49 -18.00 9.46 -4.55 -0.04 -18.04 16 17 C -0.31 -6.04 6.45 24.13 0.16 -5.88 16 18 S 0.32 2.64 22.16 -56.49 -1.25 1.38 16 19 C -0.18 -0.15 10.90 66.77 0.73 0.58 16 20 C -0.15 -0.55 9.63 21.18 0.20 -0.35 16 21 C 0.18 2.86 6.75 37.59 0.25 3.12 16 22 N -0.33 -7.05 3.85 -192.91 -0.74 -7.79 16 23 C 0.24 3.47 12.32 180.17 2.22 5.69 16 24 N -0.36 -9.05 12.15 -60.11 -0.73 -9.78 16 25 N -0.10 -3.19 13.39 37.02 0.50 -2.69 16 26 N -0.02 -0.77 9.27 37.02 0.34 -0.43 16 27 N -0.34 -16.26 12.42 -54.48 -0.68 -16.94 16 28 H 0.26 15.23 7.22 -92.71 -0.67 14.56 16 29 H 0.05 2.66 7.94 -2.38 -0.02 2.64 16 30 H 0.02 0.99 8.00 -2.39 -0.02 0.97 16 31 H 0.20 6.69 8.06 -2.91 -0.02 6.67 16 32 H 0.17 6.89 5.90 -2.91 -0.02 6.88 16 33 H 0.42 10.70 7.95 -92.71 -0.74 9.97 16 34 H 0.23 -1.79 8.06 -2.91 -0.02 -1.81 16 35 H 0.20 -1.12 7.50 -2.91 -0.02 -1.14 16 36 H 0.30 -0.53 7.61 -2.91 -0.02 -0.56 16 Total: -1.00 -89.87 335.93 4.95 -84.91 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 0.55 Total: 8.18 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 7.65 Total: 2.80 kcal Atomic # 7 Polarization: -127.15 SS G_CDS: -4.00 Total: -131.15 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.04 Total: -18.04 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 2.05 Total: 51.92 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -1.25 Total: 1.38 kcal Total: -89.87 4.95 -84.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344281126.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 299.299 kcal (2) G-P(sol) polarization free energy of solvation -89.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 209.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 214.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds