Wall clock time and date at job start Wed Apr 1 2020 03:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34962 * 125.97410 * 124.71196 * 10 9 7 12 12 C 1.35241 * 107.86078 * 179.83477 * 11 10 9 13 13 C 1.40415 * 107.86717 * 0.42439 * 12 11 10 14 14 N 1.40105 * 125.97584 * 179.71076 * 13 12 11 15 15 C 1.34771 * 119.99813 * 0.02562 * 14 13 12 16 16 O 1.21640 * 120.00218 * 359.97438 * 15 14 13 17 17 C 1.47292 * 119.99855 * 179.97438 * 15 14 13 18 18 C 1.35213 * 122.42833 * 179.97438 * 17 15 14 19 19 S 1.71017 * 109.10410 * 179.97438 * 18 17 15 20 20 C 1.76000 * 90.57252 * 359.97438 * 19 18 17 21 21 C 1.47951 * 125.31696 * 180.02562 * 20 19 18 22 22 N 1.34099 * 125.67085 * 179.66784 * 21 20 19 23 23 C 1.30617 * 109.77940 * 179.81676 * 22 21 20 24 24 N 1.34571 * 108.33268 * 0.44488 * 23 22 21 25 25 H 0.97001 * 126.73689 * 179.75227 * 24 23 22 26 26 N 1.31636 * 125.66772 * 359.97438 * 21 20 19 27 27 N 1.29832 * 109.36736 * 359.75618 * 20 19 18 28 28 N 1.31231 * 108.05005 * 359.74133 * 13 12 11 29 29 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 31 31 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 32 32 H 1.07998 * 126.07343 * 359.97438 * 11 10 9 33 33 H 1.08004 * 126.06751 * 180.16151 * 12 11 10 34 34 H 0.96998 * 119.99481 * 180.02562 * 14 13 12 35 35 H 1.07995 * 125.45181 * 359.93925 * 18 17 15 36 36 H 1.08002 * 125.83220 * 180.17602 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2488 -4.6214 0.8836 12 6 3.2625 -5.4440 0.5302 13 6 3.8668 -4.9133 -0.6208 14 7 4.9601 -5.4619 -1.3038 15 6 5.5262 -6.6029 -0.8634 16 8 5.0881 -7.1562 0.1274 17 6 6.6753 -7.1800 -1.5817 18 6 7.2807 -8.3213 -1.1831 19 16 8.5648 -8.6776 -2.2549 20 6 8.2013 -7.2365 -3.1976 21 6 8.9333 -6.7979 -4.4062 22 7 8.6586 -5.7050 -5.1331 23 6 9.4997 -5.6131 -6.1282 24 7 10.3401 -6.6626 -6.0703 25 1 11.0668 -6.8584 -6.6822 26 7 9.9589 -7.4186 -4.9499 27 7 7.1868 -6.6215 -2.6700 28 7 3.2287 -3.8132 -0.9445 29 1 -0.4850 -0.8400 0.0004 30 1 0.6281 -2.5591 0.8866 31 1 0.6207 -2.5548 -0.8933 32 1 1.5912 -4.7503 1.7305 33 1 3.5578 -6.3466 1.0447 34 1 5.3096 -5.0204 -2.0936 35 1 6.9989 -8.9131 -0.3247 36 1 9.5152 -4.8310 -6.8728 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344498788.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:20 Heat of formation + Delta-G solvation = 192.060143 kcal Electronic energy + Delta-G solvation = -25253.820736 eV Core-core repulsion = 21290.452877 eV Total energy + Delta-G solvation = -3963.367859 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.61416 -40.97334 -40.20872 -38.55576 -34.86231 -33.64395 -33.52663 -32.23702 -30.95892 -30.48255 -29.35570 -27.00416 -26.07562 -24.46956 -23.37532 -22.84719 -21.43218 -20.57312 -20.05430 -19.63313 -18.92805 -18.46956 -17.14926 -17.05291 -16.25201 -16.16001 -16.00667 -15.53929 -15.43156 -15.03382 -14.47257 -14.21028 -13.82518 -13.75230 -13.69133 -13.17444 -12.79337 -12.41464 -12.32313 -12.18563 -11.80428 -11.15649 -11.11474 -10.77779 -10.66464 -10.56639 -10.44518 -10.38745 -10.14599 -10.12296 -10.02147 -9.73408 -9.15232 -8.95250 -8.54102 -8.16390 -7.48989 -6.54197 -4.27851 -0.21254 0.60413 0.93110 1.08921 1.56225 1.91929 2.49131 2.73348 2.78669 3.10683 3.12297 3.41453 3.43745 3.62190 3.74954 3.77771 3.93079 4.33077 4.44898 4.45464 4.79476 4.80889 5.19598 5.26522 5.48774 5.50973 5.58902 5.77091 6.20749 6.38623 6.42876 6.51794 6.60536 6.79055 6.96658 7.36116 7.42529 7.51743 7.74515 7.86996 8.17172 8.38897 8.58185 8.66333 9.40171 10.83447 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.012515 B = 0.002354 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.731839 B =11892.784455 C =13785.294800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.607 4.607 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.316 5.316 11 C 0.051 3.949 12 C -0.285 4.285 13 C 0.258 3.742 14 N -0.610 5.610 15 C 0.601 3.399 16 O -0.511 6.511 17 C 0.018 3.982 18 C -0.205 4.205 19 S 0.244 5.756 20 C 0.111 3.889 21 C 0.301 3.699 22 N -0.503 5.503 23 C 0.272 3.728 24 N -0.475 5.475 25 H 0.447 0.553 26 N -0.292 5.292 27 N -0.393 5.393 28 N -0.296 5.296 29 H 0.267 0.733 30 H 0.046 0.954 31 H 0.035 0.965 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.422 0.578 35 H 0.201 0.799 36 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.310 -18.799 -10.735 31.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.182 4.182 3 Si 0.904 3.096 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.645 4.645 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.098 5.098 11 C -0.099 4.099 12 C -0.316 4.316 13 C 0.005 3.995 14 N -0.257 5.257 15 C 0.384 3.616 16 O -0.386 6.386 17 C -0.120 4.120 18 C -0.349 4.349 19 S 0.499 5.501 20 C -0.167 4.167 21 C 0.018 3.982 22 N -0.230 5.230 23 C -0.027 4.027 24 N -0.195 5.195 25 H 0.294 0.706 26 N -0.125 5.125 27 N -0.110 5.110 28 N -0.127 5.127 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.186 0.814 33 H 0.179 0.821 34 H 0.260 0.740 35 H 0.218 0.782 36 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 22.157 -17.192 -10.795 30.050 hybrid contribution 0.157 -1.588 -0.042 1.597 sum 22.314 -18.780 -10.837 31.113 Atomic orbital electron populations 1.70852 1.06768 1.30403 1.46073 1.25921 0.96315 1.02800 0.93147 0.83423 0.74796 0.74536 0.76886 1.20561 1.21254 1.21075 1.22111 0.95428 0.90425 1.56563 0.91797 1.19770 0.86306 0.82823 0.98011 1.48822 1.23315 1.19500 1.18167 1.22556 1.00464 0.90153 0.96724 1.21534 1.02234 1.06308 1.01500 1.19061 0.91431 0.94331 0.94666 1.42192 1.29142 1.24085 1.30266 1.16871 0.81238 0.80066 0.83435 1.90762 1.62090 1.60742 1.24959 1.19981 1.01037 0.95760 0.95219 1.26835 1.00438 1.01171 1.06412 1.84001 1.26637 1.22792 1.16645 1.23649 0.97635 0.97227 0.98235 1.20487 0.92531 0.91300 0.93880 1.70702 1.26530 1.19630 1.06140 1.26361 0.86624 0.92283 0.97473 1.48135 1.28911 1.19498 1.22972 0.70608 1.78248 1.16243 1.17938 1.00052 1.66868 1.07407 1.29288 1.07442 1.77405 1.03339 1.16060 1.15853 0.92300 0.93589 0.94705 0.81416 0.82072 0.74036 0.78194 0.75148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.72 13.65 55.43 0.76 -25.97 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 3 Si 1.08 25.40 29.90 -169.99 -5.08 20.32 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.61 -17.44 9.24 -34.44 -0.32 -17.76 16 8 H 0.06 1.92 7.81 -52.49 -0.41 1.51 16 9 C 0.25 6.44 5.57 -5.19 -0.03 6.41 16 10 N -0.32 -7.63 3.67 -62.56 -0.23 -7.86 16 11 C 0.05 1.04 11.43 -17.24 -0.20 0.84 16 12 C -0.28 -5.82 9.60 -39.83 -0.38 -6.20 16 13 C 0.26 5.54 8.11 -154.43 -1.25 4.29 16 14 N -0.61 -11.00 5.44 -12.14 -0.07 -11.07 16 15 C 0.60 9.84 7.76 -12.58 -0.10 9.74 16 16 O -0.51 -9.11 13.78 5.24 0.07 -9.04 16 17 C 0.02 0.23 6.64 -84.94 -0.56 -0.33 16 18 C -0.21 -2.03 10.57 29.66 0.31 -1.72 16 19 S 0.24 1.96 23.17 -107.50 -2.49 -0.53 16 20 C 0.11 1.28 7.50 -14.42 -0.11 1.17 16 21 C 0.30 3.32 8.04 -156.61 -1.26 2.06 16 22 N -0.50 -5.43 11.22 -12.47 -0.14 -5.57 16 23 C 0.27 1.47 13.11 -90.71 -1.19 0.28 16 24 N -0.48 -2.24 7.44 29.52 0.22 -2.03 16 25 H 0.45 0.21 8.96 -182.34 -1.63 -1.43 16 26 N -0.29 -2.59 12.84 32.03 0.41 -2.17 16 27 N -0.39 -5.32 10.07 -8.09 -0.08 -5.40 16 28 N -0.30 -7.21 12.42 31.43 0.39 -6.82 16 29 H 0.27 7.70 7.22 -40.82 -0.29 7.40 16 30 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 31 H 0.04 0.94 8.00 -51.93 -0.42 0.52 16 32 H 0.17 2.78 8.06 -52.49 -0.42 2.36 16 33 H 0.16 3.12 5.91 -52.48 -0.31 2.81 16 34 H 0.42 7.15 8.30 -40.82 -0.34 6.81 16 35 H 0.20 1.60 7.99 -52.49 -0.42 1.18 16 36 H 0.23 0.05 8.06 -52.49 -0.42 -0.37 16 LS Contribution 346.21 15.07 5.22 5.22 Total: -1.00 -38.29 346.21 -10.08 -48.37 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -3.88 Total: 3.20 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -5.18 Total: -0.66 kcal Atomic # 7 Polarization: -68.15 SS G_CDS: 1.26 Total: -66.88 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.07 Total: -9.04 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.32 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.49 Total: -0.53 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -38.29 -10.08 -48.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344498788.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 240.435 kcal (2) G-P(sol) polarization free energy of solvation -38.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 202.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds