Wall clock time and date at job start Wed Apr 1 2020 03:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34962 * 125.97410 * 124.71196 * 10 9 7 12 12 C 1.35241 * 107.86078 * 179.83477 * 11 10 9 13 13 C 1.40415 * 107.86717 * 0.42439 * 12 11 10 14 14 N 1.40105 * 125.97584 * 179.71076 * 13 12 11 15 15 C 1.34771 * 119.99813 * 0.02562 * 14 13 12 16 16 O 1.21640 * 120.00218 * 359.97438 * 15 14 13 17 17 C 1.47292 * 119.99855 * 179.97438 * 15 14 13 18 18 C 1.35213 * 122.42833 * 179.97438 * 17 15 14 19 19 S 1.71017 * 109.10410 * 179.97438 * 18 17 15 20 20 C 1.76000 * 90.57252 * 359.97438 * 19 18 17 21 21 C 1.47951 * 125.31696 * 180.02562 * 20 19 18 22 22 N 1.34099 * 125.67085 * 179.66784 * 21 20 19 23 23 C 1.30617 * 109.77940 * 179.81676 * 22 21 20 24 24 N 1.34571 * 108.33268 * 0.44488 * 23 22 21 25 25 H 0.97001 * 126.73689 * 179.75227 * 24 23 22 26 26 N 1.31636 * 125.66772 * 359.97438 * 21 20 19 27 27 N 1.29832 * 109.36736 * 359.75618 * 20 19 18 28 28 N 1.31231 * 108.05005 * 359.74133 * 13 12 11 29 29 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 31 31 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 32 32 H 1.07998 * 126.07343 * 359.97438 * 11 10 9 33 33 H 1.08004 * 126.06751 * 180.16151 * 12 11 10 34 34 H 0.96998 * 119.99481 * 180.02562 * 14 13 12 35 35 H 1.07995 * 125.45181 * 359.93925 * 18 17 15 36 36 H 1.08002 * 125.83220 * 180.17602 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2488 -4.6214 0.8836 12 6 3.2625 -5.4440 0.5302 13 6 3.8668 -4.9133 -0.6208 14 7 4.9601 -5.4619 -1.3038 15 6 5.5262 -6.6029 -0.8634 16 8 5.0881 -7.1562 0.1274 17 6 6.6753 -7.1800 -1.5817 18 6 7.2807 -8.3213 -1.1831 19 16 8.5648 -8.6776 -2.2549 20 6 8.2013 -7.2365 -3.1976 21 6 8.9333 -6.7979 -4.4062 22 7 8.6586 -5.7050 -5.1331 23 6 9.4997 -5.6131 -6.1282 24 7 10.3401 -6.6626 -6.0703 25 1 11.0668 -6.8584 -6.6822 26 7 9.9589 -7.4186 -4.9499 27 7 7.1868 -6.6215 -2.6700 28 7 3.2287 -3.8132 -0.9445 29 1 -0.4850 -0.8400 0.0004 30 1 0.6281 -2.5591 0.8866 31 1 0.6207 -2.5548 -0.8933 32 1 1.5912 -4.7503 1.7305 33 1 3.5578 -6.3466 1.0447 34 1 5.3096 -5.0204 -2.0936 35 1 6.9989 -8.9131 -0.3247 36 1 9.5152 -4.8310 -6.8728 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344498788.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:20 Heat of formation + Delta-G solvation = 164.298164 kcal Electronic energy + Delta-G solvation = -25255.024586 eV Core-core repulsion = 21290.452877 eV Total energy + Delta-G solvation = -3964.571709 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.16542 -42.41728 -41.47192 -39.75983 -36.49691 -35.56041 -34.15612 -32.90717 -32.69051 -31.33454 -31.06000 -28.51232 -27.37118 -25.72899 -24.69078 -23.87213 -22.75911 -21.93447 -21.36211 -20.59240 -19.69619 -19.27817 -19.23209 -18.43950 -17.47406 -17.10011 -17.01456 -16.65765 -16.45684 -15.99345 -15.93328 -15.64393 -15.41502 -15.17359 -14.93357 -14.46696 -14.15995 -13.93459 -13.74121 -13.35306 -13.26026 -13.05677 -12.61937 -12.09085 -11.94864 -11.76106 -11.73401 -11.31781 -11.27907 -11.18439 -11.10505 -11.01384 -10.74948 -10.69268 -9.93350 -9.83762 -9.23507 -8.78080 -6.55619 -0.97735 -0.12337 0.12600 0.28251 0.75068 1.08974 1.28118 1.48014 1.50976 1.57734 1.65395 1.79565 1.99222 2.22213 2.34759 2.48369 2.52639 3.01172 3.12920 3.58504 3.80759 3.91793 3.98173 4.13045 4.15210 4.47867 4.55010 4.69064 4.78074 4.80438 4.90500 5.00738 5.02139 5.54715 5.76360 5.91125 5.96961 6.13113 6.25531 6.27000 6.41724 6.81213 6.89937 6.93343 7.19598 8.58450 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.012515 B = 0.002354 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.731839 B =11892.784455 C =13785.294800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.018 4.018 3 Si 1.119 2.881 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.277 1.277 7 C -0.623 4.623 8 H 0.043 0.957 9 C 0.259 3.741 10 N -0.341 5.341 11 C 0.059 3.941 12 C -0.288 4.288 13 C 0.265 3.735 14 N -0.614 5.614 15 C 0.604 3.396 16 O -0.529 6.529 17 C -0.011 4.011 18 C -0.197 4.197 19 S 0.341 5.659 20 C 0.085 3.915 21 C 0.278 3.722 22 N -0.558 5.558 23 C 0.287 3.713 24 N -0.456 5.456 25 H 0.466 0.534 26 N -0.303 5.303 27 N -0.425 5.425 28 N -0.345 5.345 29 H 0.261 0.739 30 H 0.058 0.942 31 H 0.017 0.983 32 H 0.207 0.793 33 H 0.175 0.825 34 H 0.425 0.575 35 H 0.221 0.779 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.678 -20.046 -11.130 33.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.218 4.218 3 Si 0.940 3.060 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.202 1.202 7 C -0.660 4.660 8 H 0.062 0.938 9 C 0.140 3.860 10 N -0.123 5.123 11 C -0.089 4.089 12 C -0.319 4.319 13 C 0.010 3.990 14 N -0.261 5.261 15 C 0.389 3.611 16 O -0.404 6.404 17 C -0.148 4.148 18 C -0.341 4.341 19 S 0.597 5.403 20 C -0.193 4.193 21 C -0.005 4.005 22 N -0.287 5.287 23 C -0.011 4.011 24 N -0.178 5.178 25 H 0.318 0.682 26 N -0.137 5.137 27 N -0.142 5.142 28 N -0.176 5.176 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.224 0.776 33 H 0.193 0.807 34 H 0.262 0.738 35 H 0.237 0.763 36 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 24.579 -18.493 -11.224 32.743 hybrid contribution -0.382 -1.408 -0.027 1.459 sum 24.198 -19.902 -11.252 33.290 Atomic orbital electron populations 1.70945 1.07372 1.30176 1.47313 1.27271 0.96461 1.06021 0.92046 0.82890 0.74154 0.71170 0.77782 1.19772 1.19629 1.20217 1.22286 0.94630 0.92213 1.56917 0.93850 1.19453 0.86367 0.82697 0.97514 1.48621 1.23858 1.20239 1.19583 1.23235 1.00510 0.88548 0.96638 1.21766 1.02148 1.06701 1.01262 1.19419 0.91449 0.93394 0.94708 1.42370 1.28576 1.24798 1.30383 1.17340 0.81492 0.79049 0.83182 1.90718 1.62910 1.60997 1.25778 1.19546 1.01403 0.97414 0.96414 1.27198 1.00248 0.99795 1.06857 1.83673 1.23724 1.19403 1.13509 1.23987 0.97514 0.98778 0.98998 1.20563 0.93436 0.92096 0.94420 1.70640 1.29155 1.20742 1.08181 1.27188 0.84825 0.92471 0.96568 1.48075 1.29035 1.18707 1.22008 0.68239 1.78118 1.15705 1.18694 1.01232 1.66778 1.08727 1.30737 1.07983 1.77316 1.04775 1.18103 1.17414 0.92947 0.92449 0.96521 0.77592 0.80736 0.73774 0.76262 0.70511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.85 13.65 21.45 0.29 -54.56 16 2 C -0.02 -1.05 5.46 84.65 0.46 -0.59 16 3 Si 1.12 51.06 29.90 68.60 2.05 53.11 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.62 -36.54 9.24 25.60 0.24 -36.31 16 8 H 0.04 2.68 7.81 -2.91 -0.02 2.66 16 9 C 0.26 13.73 5.57 85.64 0.48 14.21 16 10 N -0.34 -16.77 3.67 -351.84 -1.29 -18.06 16 11 C 0.06 2.39 11.43 83.52 0.96 3.35 16 12 C -0.29 -11.73 9.60 22.11 0.21 -11.52 16 13 C 0.26 11.61 8.11 133.34 1.08 12.70 16 14 N -0.61 -22.83 5.44 -310.57 -1.69 -24.52 16 15 C 0.60 19.96 7.76 86.63 0.67 20.63 16 16 O -0.53 -18.66 13.78 -4.16 -0.06 -18.71 16 17 C -0.01 -0.28 6.64 40.71 0.27 -0.01 16 18 C -0.20 -3.57 10.57 67.12 0.71 -2.86 16 19 S 0.34 4.73 23.17 -56.49 -1.31 3.42 16 20 C 0.09 1.92 7.50 87.56 0.66 2.57 16 21 C 0.28 5.96 8.04 137.25 1.10 7.07 16 22 N -0.56 -11.80 11.22 -193.35 -2.17 -13.97 16 23 C 0.29 2.53 13.11 180.38 2.36 4.90 16 24 N -0.46 -3.28 7.44 -60.52 -0.45 -3.73 16 25 H 0.47 -0.87 8.96 -213.10 -1.91 -2.78 16 26 N -0.30 -4.91 12.84 -52.56 -0.67 -5.59 16 27 N -0.42 -11.65 10.07 -179.52 -1.81 -13.45 16 28 N -0.35 -17.41 12.42 -54.47 -0.68 -18.08 16 29 H 0.26 15.34 7.22 -92.71 -0.67 14.67 16 30 H 0.06 2.88 7.94 -2.39 -0.02 2.86 16 31 H 0.02 0.94 8.00 -2.39 -0.02 0.92 16 32 H 0.21 6.45 8.06 -2.91 -0.02 6.42 16 33 H 0.18 6.62 5.91 -2.91 -0.02 6.60 16 34 H 0.42 15.16 8.30 -92.71 -0.77 14.39 16 35 H 0.22 2.96 7.99 -2.91 -0.02 2.94 16 36 H 0.28 -0.81 8.06 -2.91 -0.02 -0.83 16 Total: -1.00 -85.91 346.21 0.04 -85.87 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -1.38 Total: 14.14 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 9.20 Total: 14.15 kcal Atomic # 7 Polarization: -143.50 SS G_CDS: -8.47 Total: -151.97 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.06 Total: -18.71 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.05 Total: 53.11 kcal Atomic # 16 Polarization: 4.73 SS G_CDS: -1.31 Total: 3.42 kcal Total: -85.91 0.04 -85.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344498788.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 250.167 kcal (2) G-P(sol) polarization free energy of solvation -85.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds