Wall clock time and date at job start Wed Apr 1 2020 03:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00054 * 2 1 4 4 H 1.48497 * 109.47487 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46976 * 299.99821 * 3 2 1 6 6 H 1.48505 * 109.47229 * 59.99411 * 3 2 1 7 7 C 1.37882 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99562 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00076 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47168 * 179.97438 * 9 7 2 11 11 C 1.34981 * 125.97256 * 124.97276 * 10 9 7 12 12 C 1.35237 * 107.86464 * 179.75242 * 11 10 9 13 13 C 1.40424 * 107.86647 * 0.40077 * 12 11 10 14 14 N 1.40088 * 125.97608 * 179.86634 * 13 12 11 15 15 C 1.34777 * 119.99949 * 359.70655 * 14 13 12 16 16 O 1.21573 * 119.99757 * 0.02562 * 15 14 13 17 17 C 1.47796 * 119.99980 * 180.02562 * 15 14 13 18 18 C 1.39834 * 125.68798 * 180.02562 * 17 15 14 19 19 C 1.38623 * 107.51112 * 180.29995 * 18 17 15 20 20 C 1.40944 * 132.70601 * 180.48130 * 19 18 17 21 21 C 1.36130 * 119.22857 * 179.56612 * 20 19 18 22 22 Cl 1.73605 * 120.21200 * 179.69366 * 21 20 19 23 23 C 1.40611 * 119.57445 * 359.72247 * 21 20 19 24 24 C 1.34875 * 120.44114 * 359.97438 * 23 21 20 25 25 N 1.36603 * 120.71128 * 0.02562 * 24 23 21 26 26 N 1.32475 * 125.68909 * 0.04268 * 17 15 14 27 27 N 1.31237 * 108.04999 * 359.59440 * 13 12 11 28 28 H 0.97000 * 119.99956 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47065 * 59.99766 * 9 7 2 30 30 H 1.09000 * 109.47650 * 300.00014 * 9 7 2 31 31 H 1.07994 * 126.06499 * 0.03236 * 11 10 9 32 32 H 1.07997 * 126.06711 * 180.26711 * 12 11 10 33 33 H 0.97000 * 120.00109 * 179.71839 * 14 13 12 34 34 H 1.08002 * 126.24127 * 0.02899 * 18 17 15 35 35 H 1.08008 * 120.38537 * 359.29100 * 20 19 18 36 36 H 1.07995 * 119.78077 * 179.97438 * 23 21 20 37 37 H 1.07999 * 119.64834 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.2423 -4.6222 0.8957 12 6 3.2572 -5.4456 0.5481 13 6 3.8688 -4.9150 -0.5993 14 7 4.9636 -5.4660 -1.2777 15 6 5.5280 -6.6061 -0.8325 16 8 5.0866 -7.1565 0.1575 17 6 6.6834 -7.1871 -1.5480 18 6 7.3573 -8.3596 -1.1925 19 6 8.3775 -8.5493 -2.1118 20 6 9.3585 -9.5507 -2.2580 21 6 10.2420 -9.4699 -3.2904 22 17 11.4658 -10.6850 -3.4901 23 6 10.1575 -8.3957 -4.1938 24 6 9.2087 -7.4491 -4.0430 25 7 8.3145 -7.5155 -3.0124 26 7 7.2534 -6.6837 -2.6327 27 7 3.2317 -3.8158 -0.9282 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6240 -2.5568 0.8903 31 1 1.5780 -4.7519 1.7372 32 1 3.5474 -6.3495 1.0629 33 1 5.3156 -5.0269 -2.0677 34 1 7.1279 -8.9982 -0.3523 35 1 9.4115 -10.3702 -1.5564 36 1 10.8570 -8.3281 -5.0138 37 1 9.1552 -6.6297 -4.7446 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354405352.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:12 Heat of formation + Delta-G solvation = 155.712151 kcal Electronic energy + Delta-G solvation = -25155.097269 eV Core-core repulsion = 21155.816785 eV Total energy + Delta-G solvation = -3999.280484 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.073 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.55556 -40.70870 -39.34262 -38.03165 -36.73420 -34.88405 -33.42511 -33.38198 -31.60316 -30.74383 -29.35904 -29.00555 -26.91923 -25.33472 -23.87270 -23.13063 -22.55719 -21.25246 -20.16741 -19.62935 -18.14667 -17.86456 -17.16356 -16.60711 -16.54035 -16.32914 -16.01540 -15.34104 -15.15845 -15.10795 -14.54440 -14.23599 -13.97372 -13.83352 -13.46631 -13.38210 -12.83433 -12.75571 -12.38126 -12.28241 -11.86633 -11.67331 -11.66253 -11.35879 -11.07187 -10.93366 -10.89534 -10.49859 -10.27401 -10.22111 -9.81868 -9.79129 -9.49972 -8.64364 -8.20702 -8.15854 -7.51761 -6.25083 -4.29954 0.00586 0.29911 1.32229 1.46685 1.54418 2.60475 2.64093 2.71641 3.07932 3.22273 3.29851 3.36590 3.55114 3.73948 3.76515 4.02637 4.18590 4.25972 4.32491 4.57674 4.66377 4.99894 5.10294 5.14333 5.24021 5.31296 5.49873 5.51684 5.76709 5.93224 6.16932 6.19359 6.43662 6.51313 6.82280 6.86254 7.04292 7.31733 7.51260 7.70210 7.86978 8.01626 8.07045 8.59206 8.79502 9.35798 10.83731 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.023518 B = 0.001800 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.293523 B =15550.941122 C =16474.295707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.070 0.930 9 C 0.257 3.743 10 N -0.316 5.316 11 C 0.053 3.947 12 C -0.286 4.286 13 C 0.254 3.746 14 N -0.612 5.612 15 C 0.605 3.395 16 O -0.496 6.496 17 C 0.072 3.928 18 C -0.205 4.205 19 C 0.099 3.901 20 C -0.091 4.091 21 C -0.007 4.007 22 Cl -0.045 7.045 23 C -0.155 4.155 24 C 0.130 3.870 25 N -0.269 5.269 26 N -0.273 5.273 27 N -0.298 5.298 28 H 0.267 0.733 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.170 0.830 32 H 0.161 0.839 33 H 0.418 0.582 34 H 0.173 0.827 35 H 0.161 0.839 36 H 0.166 0.834 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.211 -21.106 -7.482 30.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.567 4.567 8 H 0.088 0.912 9 C 0.140 3.860 10 N -0.098 5.098 11 C -0.097 4.097 12 C -0.317 4.317 13 C 0.002 3.998 14 N -0.259 5.259 15 C 0.387 3.613 16 O -0.367 6.367 17 C -0.087 4.087 18 C -0.235 4.235 19 C -0.019 4.019 20 C -0.111 4.111 21 C -0.038 4.038 22 Cl -0.015 7.015 23 C -0.178 4.178 24 C 0.005 3.995 25 N -0.039 5.039 26 N -0.103 5.103 27 N -0.130 5.130 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.187 0.813 32 H 0.178 0.822 33 H 0.255 0.745 34 H 0.190 0.810 35 H 0.179 0.821 36 H 0.184 0.816 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 20.497 -19.378 -8.384 29.427 hybrid contribution 0.795 -0.155 0.578 0.995 sum 21.292 -19.534 -7.806 29.931 Atomic orbital electron populations 1.69927 1.06030 1.27532 1.49821 1.24947 0.94990 0.99566 0.94594 0.86272 0.80075 0.82448 0.77713 1.19557 1.20690 1.20760 1.21300 0.94060 0.89350 1.51970 0.91210 1.19783 0.85595 0.81268 0.99393 1.49130 1.23058 1.19713 1.17908 1.22575 1.00281 0.90064 0.96761 1.21522 1.02187 1.06307 1.01708 1.19015 0.91359 0.94592 0.94884 1.42199 1.29418 1.24107 1.30210 1.16673 0.80990 0.80086 0.83520 1.90772 1.61148 1.60357 1.24390 1.21938 0.96784 0.95743 0.94197 1.21379 0.97628 1.00441 1.04048 1.19296 0.98535 0.90968 0.93078 1.20506 0.93063 0.98765 0.98800 1.20705 0.93344 0.92771 0.97002 1.98414 1.52702 1.53499 1.96935 1.20705 1.00926 0.93924 1.02234 1.21527 0.87798 1.00467 0.89669 1.46288 1.21413 1.17409 1.18839 1.78222 1.00610 1.14796 1.16639 1.77369 1.03448 1.16064 1.16075 0.92373 0.93606 0.92391 0.81281 0.82153 0.74540 0.80998 0.82121 0.81632 0.80153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -14.71 9.24 -34.44 -0.32 -15.02 16 8 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 9 C 0.26 6.51 6.26 -5.20 -0.03 6.48 16 10 N -0.32 -7.34 3.67 -62.56 -0.23 -7.56 16 11 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 12 C -0.29 -5.63 9.60 -39.83 -0.38 -6.01 16 13 C 0.25 5.19 8.11 -154.44 -1.25 3.94 16 14 N -0.61 -10.27 5.44 -12.00 -0.07 -10.34 16 15 C 0.61 9.48 7.80 -12.35 -0.10 9.38 16 16 O -0.50 -8.66 14.00 5.30 0.07 -8.59 16 17 C 0.07 0.94 7.05 -83.08 -0.59 0.35 16 18 C -0.21 -2.23 10.66 -38.84 -0.41 -2.64 16 19 C 0.10 0.92 6.79 -84.27 -0.57 0.35 16 20 C -0.09 -0.60 9.89 -39.32 -0.39 -0.99 16 21 C -0.01 -0.04 6.33 -39.44 -0.25 -0.29 16 22 Cl -0.04 -0.23 28.97 -51.86 -1.50 -1.74 16 23 C -0.16 -0.72 9.79 -39.88 -0.39 -1.11 16 24 C 0.13 0.79 11.18 -16.62 -0.19 0.60 16 25 N -0.27 -2.63 3.90 -10.71 -0.04 -2.67 16 26 N -0.27 -3.37 12.34 33.21 0.41 -2.96 16 27 N -0.30 -6.94 12.42 31.43 0.39 -6.55 16 28 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 31 H 0.17 2.69 8.06 -52.49 -0.42 2.26 16 32 H 0.16 3.00 5.91 -52.49 -0.31 2.69 16 33 H 0.42 6.28 8.51 -40.82 -0.35 5.94 16 34 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.16 0.72 8.06 -52.48 -0.42 0.30 16 36 H 0.17 0.30 8.06 -52.49 -0.42 -0.12 16 37 H 0.18 0.61 8.06 -52.49 -0.42 0.18 16 LS Contribution 351.50 15.07 5.30 5.30 Total: -1.00 -33.17 351.50 -8.27 -41.44 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -3.16 Total: 4.32 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -5.16 Total: -2.50 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 1.20 Total: -54.62 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.07 Total: -8.59 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.50 Total: -1.74 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.17 -8.27 -41.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354405352.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.151 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds