Wall clock time and date at job start Wed Apr 1 2020 02:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46951 * 2 1 4 4 C 1.46501 * 119.99877 * 90.00142 * 3 2 1 5 5 C 1.50699 * 109.47236 * 269.99646 * 4 3 2 6 6 C 1.33347 * 125.18409 * 89.99861 * 5 4 3 7 7 C 1.38475 * 114.92849 * 180.02562 * 6 5 4 8 8 C 1.33503 * 114.88382 * 0.02562 * 7 6 5 9 9 Cl 1.73595 * 125.20870 * 179.97438 * 8 7 6 10 10 S 1.75877 * 125.19207 * 270.00136 * 5 4 3 11 11 C 1.34780 * 119.99841 * 270.00072 * 3 2 1 12 12 O 1.21587 * 119.99536 * 179.97438 * 11 3 2 13 13 N 1.34777 * 120.00420 * 0.02562 * 11 3 2 14 14 C 1.46491 * 119.99972 * 179.97438 * 13 11 3 15 15 C 1.50706 * 109.46901 * 180.02562 * 14 13 11 16 16 O 1.21281 * 119.99889 * 359.97438 * 15 14 13 17 17 N 1.34783 * 119.99840 * 180.02562 * 15 14 13 18 18 C 1.37094 * 119.99873 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99601 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00088 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99929 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99980 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47443 * 89.99449 * 22 20 18 24 24 H 1.48507 * 109.47219 * 210.00093 * 22 20 18 25 25 H 1.48504 * 109.46928 * 329.99621 * 22 20 18 26 26 H 1.09000 * 109.47172 * 59.99754 * 1 2 3 27 27 H 1.09000 * 109.46990 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47044 * 299.99691 * 1 2 3 29 29 H 1.09000 * 109.47044 * 240.00309 * 2 1 3 30 30 H 1.08994 * 109.47538 * 120.00051 * 2 1 3 31 31 H 1.09006 * 109.46855 * 149.99786 * 4 3 2 32 32 H 1.08997 * 109.46849 * 30.00096 * 4 3 2 33 33 H 1.07996 * 122.54060 * 0.02599 * 6 5 4 34 34 H 1.08005 * 122.55896 * 179.73668 * 7 6 5 35 35 H 0.96995 * 119.99381 * 0.02562 * 13 11 3 36 36 H 1.09001 * 109.47235 * 299.99805 * 14 13 11 37 37 H 1.08997 * 109.47583 * 60.00344 * 14 13 11 38 38 H 0.96998 * 119.99729 * 359.97438 * 17 15 14 39 39 H 0.96997 * 119.99164 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 1.2688 5 6 1.0067 2.7823 1.7038 6 6 0.0517 2.2546 2.4705 7 6 -1.0128 3.0981 2.7402 8 6 -0.9213 4.3115 2.1908 9 17 -2.1001 5.5753 2.3537 10 16 0.5770 4.4337 1.2778 11 6 2.2429 2.0166 -1.1672 12 8 2.6477 3.1631 -1.1672 13 7 2.0178 1.3815 -2.3345 14 6 2.2614 2.0723 -3.6031 15 6 1.9339 1.1494 -4.7486 16 8 1.5366 0.0251 -4.5270 17 7 2.0835 1.5731 -6.0193 18 6 1.7861 0.7333 -7.0614 19 1 1.4323 -0.2679 -6.8640 20 6 1.9398 1.1702 -8.3714 21 7 1.6551 0.3651 -9.3702 22 14 2.5523 2.9016 -8.7127 23 1 4.0345 2.8933 -8.8040 24 1 1.9800 3.3854 -9.9948 25 1 2.1293 3.8026 -7.6106 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.0644 2.7985 1.1384 32 1 2.5506 1.3452 2.0283 33 1 0.1045 1.2458 2.8523 34 1 -1.8553 2.7959 3.3447 35 1 1.6938 0.4672 -2.3344 36 1 1.6311 2.9598 -3.6604 37 1 3.3093 2.3665 -3.6613 38 1 2.4016 2.4721 -6.1965 39 1 1.7621 0.6703 -10.2847 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358319658.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:11 Heat of formation + Delta-G solvation = -46.573442 kcal Electronic energy + Delta-G solvation = -25083.510966 eV Core-core repulsion = 21178.609921 eV Total energy + Delta-G solvation = -3904.901045 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.070 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.49006 -40.26310 -39.04306 -37.72681 -36.83021 -36.30841 -35.38617 -33.83339 -32.43521 -30.88881 -29.30442 -26.98438 -25.92128 -24.26384 -24.10521 -21.50167 -21.05191 -20.73690 -20.34133 -19.08228 -18.69519 -17.64780 -17.23482 -16.95425 -16.79081 -16.57568 -15.89591 -15.75834 -15.35201 -14.94219 -14.83863 -14.71527 -14.48869 -14.37219 -14.23210 -14.01767 -13.94331 -13.59694 -13.40944 -12.98728 -12.93699 -12.67372 -12.44984 -12.41878 -12.01176 -12.00433 -11.91180 -11.58647 -11.58223 -11.26136 -10.65308 -10.34515 -10.27029 -9.74184 -9.55904 -9.47544 -8.45761 -6.07407 -0.22137 0.16058 0.93929 1.25056 1.30970 1.33637 1.42262 1.45176 1.78412 1.82351 2.10817 2.20115 2.71367 3.04724 3.10766 3.78409 3.96593 4.04088 4.15870 4.32938 4.36480 4.39480 4.43940 4.51970 4.60272 4.70196 4.86852 4.97128 4.98782 5.09240 5.29823 5.36516 5.39683 5.48204 5.54911 5.84998 5.88699 6.48726 6.77878 6.88504 7.28141 7.49763 7.77776 8.70650 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.014976 B = 0.002492 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.244960 B =11232.794353 C =12078.024407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.102 3.898 3 N -0.617 5.617 4 C 0.201 3.799 5 C -0.190 4.190 6 C -0.110 4.110 7 C -0.118 4.118 8 C -0.171 4.171 9 Cl -0.023 7.023 10 S 0.129 5.871 11 C 0.704 3.296 12 O -0.619 6.619 13 N -0.728 5.728 14 C 0.137 3.863 15 C 0.446 3.554 16 O -0.613 6.613 17 N -0.578 5.578 18 C -0.330 4.330 19 H 0.064 0.936 20 C -0.007 4.007 21 N -0.926 5.926 22 Si 0.957 3.043 23 H -0.256 1.256 24 H -0.273 1.273 25 H -0.234 1.234 26 H 0.026 0.974 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.143 0.857 33 H 0.181 0.819 34 H 0.167 0.833 35 H 0.408 0.592 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.391 0.609 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.286 6.307 28.485 29.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.020 4.020 3 N -0.353 5.353 4 C 0.077 3.923 5 C -0.310 4.310 6 C -0.141 4.141 7 C -0.150 4.150 8 C -0.315 4.315 9 Cl 0.006 6.994 10 S 0.392 5.608 11 C 0.405 3.595 12 O -0.499 6.499 13 N -0.387 5.387 14 C 0.008 3.992 15 C 0.234 3.766 16 O -0.499 6.499 17 N -0.218 5.218 18 C -0.459 4.459 19 H 0.082 0.918 20 C -0.207 4.207 21 N -0.565 5.565 22 Si 0.777 3.223 23 H -0.180 1.180 24 H -0.198 1.198 25 H -0.158 1.158 26 H 0.045 0.955 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.141 0.859 31 H 0.101 0.899 32 H 0.161 0.839 33 H 0.198 0.802 34 H 0.184 0.816 35 H 0.248 0.752 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.227 0.773 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.686 7.592 27.525 28.561 hybrid contribution -1.009 -0.491 -0.331 1.170 sum -1.695 7.101 27.194 28.157 Atomic orbital electron populations 1.22293 0.95806 1.03095 1.02024 1.21794 0.94643 0.80756 1.04807 1.47242 1.69563 1.14938 1.03570 1.19958 0.91246 0.96699 0.84432 1.25224 1.03794 0.96769 1.05177 1.20245 0.91969 1.02196 0.99710 1.20508 1.01602 0.91195 1.01721 1.25579 0.99163 0.96347 1.10380 1.98359 1.54757 1.49648 1.96677 1.85217 1.12684 1.13572 1.49303 1.15957 0.78503 0.84090 0.80955 1.90880 1.54590 1.17626 1.86848 1.44916 1.71653 1.18636 1.03539 1.20679 1.03510 0.93951 0.81017 1.20483 0.83081 0.88740 0.84327 1.90513 1.52135 1.22707 1.84529 1.41925 1.59929 1.14980 1.04969 1.19024 1.44078 0.97409 0.85367 0.91753 1.26043 0.96757 1.03757 0.94183 1.69780 1.47996 1.38694 1.00067 0.85466 0.79700 0.77363 0.79734 1.17998 1.19845 1.15769 0.95456 0.89996 0.90669 0.91399 0.85889 0.89878 0.83894 0.80194 0.81592 0.75203 0.88578 0.87932 0.77281 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 10.24 71.98 0.74 -2.03 16 2 C 0.10 1.52 5.94 86.38 0.51 2.03 16 3 N -0.62 -12.32 2.46 -844.19 -2.07 -14.40 16 4 C 0.20 3.08 5.94 85.63 0.51 3.59 16 5 C -0.19 -3.21 5.98 24.58 0.15 -3.06 16 6 C -0.11 -1.39 8.12 21.22 0.17 -1.22 16 7 C -0.12 -1.75 10.13 21.25 0.22 -1.54 16 8 C -0.17 -3.32 7.10 66.75 0.47 -2.85 16 9 Cl -0.02 -0.43 29.29 -2.72 -0.08 -0.51 16 10 S 0.13 2.86 23.33 -56.49 -1.32 1.55 16 11 C 0.70 20.32 8.28 179.05 1.48 21.80 16 12 O -0.62 -21.11 15.92 -3.99 -0.06 -21.18 16 13 N -0.73 -22.68 5.39 -482.31 -2.60 -25.28 16 14 C 0.14 4.59 6.15 85.64 0.53 5.11 16 15 C 0.45 19.50 7.85 87.66 0.69 20.18 16 16 O -0.61 -31.36 15.24 -3.03 -0.05 -31.41 16 17 N -0.58 -26.65 5.09 -306.98 -1.56 -28.21 16 18 C -0.33 -18.69 10.16 84.04 0.85 -17.84 16 19 H 0.06 4.29 7.39 -2.91 -0.02 4.27 16 20 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 21 N -0.93 -54.33 13.96 21.66 0.30 -54.03 16 22 Si 0.96 38.28 27.74 68.60 1.90 40.18 16 23 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 24 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 25 H -0.23 -8.07 6.52 99.48 0.65 -7.42 16 26 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 1.01 5.53 -2.39 -0.01 1.00 16 29 H 0.07 1.23 6.36 -2.39 -0.02 1.21 16 30 H 0.12 0.87 7.89 -2.39 -0.02 0.85 16 31 H 0.08 1.57 7.42 -2.38 -0.02 1.55 16 32 H 0.14 0.95 7.89 -2.39 -0.02 0.93 16 33 H 0.18 1.04 7.74 -2.91 -0.02 1.02 16 34 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 35 H 0.41 12.83 5.17 -92.71 -0.48 12.35 16 36 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 37 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 38 H 0.39 15.25 5.76 -92.71 -0.53 14.71 16 39 H 0.28 15.09 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -75.26 360.63 1.30 -73.96 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: 0.05 Total: 35.07 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: 6.79 Total: 24.26 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -5.94 Total: -121.92 kcal Atomic # 8 Polarization: -52.47 SS G_CDS: -0.11 Total: -52.58 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 1.90 Total: 40.18 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.32 Total: 1.55 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.08 Total: -0.51 kcal Total: -75.26 1.30 -73.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358319658.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.387 kcal (2) G-P(sol) polarization free energy of solvation -75.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds