Wall clock time and date at job start Wed Apr 1 2020 03:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86807 * 120.00134 * 2 1 4 4 H 1.48491 * 109.47083 * 95.01427 * 3 2 1 5 5 H 1.48499 * 109.47382 * 215.02341 * 3 2 1 6 6 H 1.48506 * 109.46570 * 335.02088 * 3 2 1 7 7 C 1.39945 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00041 * 158.48606 * 7 2 1 9 9 C 1.41395 * 119.99950 * 338.47913 * 7 2 1 10 10 C 1.40729 * 120.24472 * 326.02729 * 9 7 2 11 11 C 1.37602 * 119.74859 * 179.97438 * 10 9 7 12 12 C 1.38658 * 120.24340 * 0.02802 * 11 10 9 13 13 C 1.38611 * 120.50450 * 359.97438 * 12 11 10 14 14 C 1.37638 * 120.24550 * 359.67752 * 13 12 11 15 15 S 1.76207 * 120.12846 * 180.32010 * 14 13 12 16 16 O 1.42094 * 106.39959 * 0.98843 * 15 14 13 17 17 O 1.42094 * 106.40353 * 133.91016 * 15 14 13 18 18 N 1.65600 * 107.21403 * 247.44968 * 15 14 13 19 19 C 1.39660 * 120.00616 * 60.56422 * 18 15 14 20 20 C 1.39085 * 120.08665 * 31.80141 * 19 18 15 21 21 C 1.38111 * 119.68069 * 179.75577 * 20 19 18 22 22 C 1.38014 * 120.43455 * 0.38346 * 21 20 19 23 23 C 1.39319 * 120.39586 * 359.70039 * 22 21 20 24 24 C 1.38354 * 120.08933 * 212.08324 * 19 18 15 25 25 C 1.51634 * 132.18560 * 0.88859 * 24 19 18 26 26 C 1.54713 * 101.91876 * 164.14858 * 25 24 19 27 27 O 1.36152 * 129.84553 * 180.59613 * 23 22 21 28 28 H 0.97004 * 120.00260 * 174.84977 * 1 2 3 29 29 H 1.08005 * 120.12674 * 359.97438 * 10 9 7 30 30 H 1.07996 * 119.87627 * 179.97438 * 11 10 9 31 31 H 1.07996 * 119.74528 * 179.97438 * 12 11 10 32 32 H 1.07995 * 119.87811 * 179.97438 * 13 12 11 33 33 H 0.97000 * 119.99759 * 240.55878 * 18 15 14 34 34 H 1.08003 * 120.15703 * 0.02562 * 20 19 18 35 35 H 1.08008 * 119.78153 * 180.10694 * 21 20 19 36 36 H 1.08004 * 119.80394 * 179.72735 * 22 21 20 37 37 H 1.08997 * 110.94067 * 282.30569 * 25 24 19 38 38 H 1.09002 * 110.93951 * 45.99623 * 25 24 19 39 39 H 1.08998 * 110.75401 * 266.94164 * 26 25 24 40 40 H 1.08999 * 110.91145 * 143.65469 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.5957 1.9852 1.3946 5 1 3.4827 1.4732 -0.8035 6 1 1.3905 2.6810 -0.5913 7 6 2.0079 -1.2119 0.0005 8 1 3.0315 -1.2446 -0.3424 9 6 1.3749 -2.3936 0.4503 10 6 0.4307 -2.3393 1.4924 11 6 -0.1796 -3.4955 1.9216 12 6 0.1333 -4.7108 1.3319 13 6 1.0618 -4.7761 0.3048 14 6 1.6792 -3.6314 -0.1455 15 16 2.8528 -3.7168 -1.4570 16 8 2.9227 -5.0821 -1.8445 17 8 2.5241 -2.6689 -2.3586 18 7 4.3318 -3.3361 -0.8168 19 6 4.8737 -4.1200 0.2042 20 6 4.6004 -5.4828 0.2567 21 6 5.1448 -6.2510 1.2671 22 6 5.9502 -5.6737 2.2277 23 6 6.2294 -4.3094 2.1864 24 6 5.6788 -3.5421 1.1695 25 6 6.1325 -2.1128 1.3948 26 6 6.6447 -2.1663 2.8537 27 8 6.9974 -3.5507 3.0161 28 1 -0.4851 -0.8367 -0.0754 29 1 0.1859 -1.3938 1.9534 30 1 -0.9042 -3.4563 2.7215 31 1 -0.3503 -5.6133 1.6754 32 1 1.2981 -5.7281 -0.1471 33 1 4.8220 -2.5686 -1.1509 34 1 3.9692 -5.9388 -0.4917 35 1 4.9351 -7.3097 1.3084 36 1 6.3670 -6.2833 3.0159 37 1 6.9369 -1.8468 0.7091 38 1 5.2968 -1.4194 1.3005 39 1 5.8554 -1.8846 3.5507 40 1 7.5183 -1.5275 2.9830 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358491821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:31 Heat of formation + Delta-G solvation = -64.660546 kcal Electronic energy + Delta-G solvation = -28833.410648 eV Core-core repulsion = 24897.865385 eV Total energy + Delta-G solvation = -3935.545262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.087 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.95785 -37.98415 -37.82561 -36.46181 -35.12692 -34.60391 -34.10211 -31.93749 -30.30162 -29.62299 -29.36442 -28.10606 -25.43154 -23.37921 -22.32945 -21.92102 -21.47082 -21.25144 -18.91723 -18.34443 -17.88385 -17.30829 -16.45144 -16.35406 -15.95157 -15.35974 -15.31377 -14.98219 -14.64256 -14.25568 -13.83427 -13.50542 -13.41400 -13.22758 -12.94644 -12.77628 -12.60168 -12.39347 -12.28925 -11.69587 -11.65472 -11.40322 -11.38506 -11.31256 -11.22091 -11.12356 -11.01774 -10.63149 -10.62002 -10.56795 -10.33303 -9.91477 -9.43249 -9.30900 -8.33541 -8.14557 -7.87287 -7.85157 -7.51873 -4.92137 1.11167 1.49625 1.63624 2.10944 2.56759 3.00784 3.09793 3.18979 3.35230 3.56789 3.81844 3.88964 4.27696 4.43232 4.57568 4.70625 4.95048 5.06302 5.14666 5.24764 5.30945 5.36890 5.48803 5.67956 5.75249 5.81340 5.84827 5.96232 5.97195 6.17807 6.20321 6.42065 6.50843 6.60043 6.72042 6.76335 6.79114 7.02834 7.14959 7.18528 7.29519 7.42515 7.45992 7.53480 7.73037 7.87876 8.25367 8.49288 9.76640 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.009762 B = 0.006012 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.672856 B = 4655.878006 C = 5674.409416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.044 3.956 3 Si 1.065 2.935 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.504 4.504 8 H 0.083 0.917 9 C 0.169 3.831 10 C -0.203 4.203 11 C -0.055 4.055 12 C -0.255 4.255 13 C 0.014 3.986 14 C -0.770 4.770 15 S 2.692 3.308 16 O -0.986 6.986 17 O -0.951 6.951 18 N -1.056 6.056 19 C 0.234 3.766 20 C -0.204 4.204 21 C -0.055 4.055 22 C -0.166 4.166 23 C 0.125 3.875 24 C -0.202 4.202 25 C -0.109 4.109 26 C 0.054 3.946 27 O -0.308 6.308 28 H 0.302 0.698 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.420 0.580 34 H 0.166 0.834 35 H 0.134 0.866 36 H 0.125 0.875 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.734 -3.230 4.153 11.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.180 4.180 3 Si 0.887 3.113 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.531 4.531 8 H 0.101 0.899 9 C 0.164 3.836 10 C -0.223 4.223 11 C -0.074 4.074 12 C -0.275 4.275 13 C -0.006 4.006 14 C -0.867 4.867 15 S 2.792 3.208 16 O -0.976 6.976 17 O -0.941 6.941 18 N -0.799 5.799 19 C 0.136 3.864 20 C -0.225 4.225 21 C -0.074 4.074 22 C -0.186 4.186 23 C 0.079 3.921 24 C -0.207 4.207 25 C -0.146 4.146 26 C -0.021 4.021 27 O -0.222 6.222 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.129 0.871 33 H 0.255 0.745 34 H 0.183 0.817 35 H 0.152 0.848 36 H 0.143 0.857 37 H 0.104 0.896 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.390 -1.941 3.405 10.175 hybrid contribution -0.063 -1.044 0.590 1.201 sum 9.327 -2.986 3.994 10.576 Atomic orbital electron populations 1.70418 1.08146 1.34638 1.26571 1.27060 0.95600 1.04316 0.91012 0.83634 0.75930 0.73462 0.78261 1.19690 1.19490 1.19507 1.20798 1.01490 0.93798 1.37034 0.89861 1.17017 0.88653 0.90299 0.87658 1.21307 1.03367 0.97278 1.00336 1.20876 0.96283 0.93284 0.96937 1.20486 1.06400 0.96784 1.03847 1.20328 0.92094 0.95376 0.92760 1.29720 1.27811 1.00838 1.28298 1.01532 0.72156 0.72712 0.74398 1.93384 1.86507 1.35629 1.82100 1.93571 1.81880 1.56720 1.61944 1.53793 1.37842 1.40144 1.48146 1.16610 0.93395 0.89481 0.86923 1.21910 1.06026 0.91387 1.03226 1.20647 0.94610 0.99690 0.92438 1.20155 1.04417 0.91424 1.02580 1.19311 0.91124 0.92466 0.89160 1.20427 1.06539 0.96149 0.97592 1.21731 1.01997 0.94372 0.96505 1.23804 1.01160 0.80776 0.96373 1.86788 1.56315 1.18219 1.60887 0.88391 0.87271 0.88415 0.88257 0.87069 0.74498 0.81654 0.84779 0.85719 0.89578 0.88346 0.90374 0.87827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.49 12.60 55.55 0.70 -18.79 16 2 C 0.04 1.06 4.98 -17.35 -0.09 0.97 16 3 Si 1.06 20.06 29.98 -169.99 -5.10 14.96 16 4 H -0.27 -4.78 7.11 56.52 0.40 -4.37 16 5 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 6 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.50 -12.18 7.33 -37.74 -0.28 -12.45 16 8 H 0.08 1.88 6.34 -52.49 -0.33 1.55 16 9 C 0.17 4.11 5.12 -106.83 -0.55 3.57 16 10 C -0.20 -4.77 7.95 -38.87 -0.31 -5.07 16 11 C -0.05 -1.17 10.02 -39.66 -0.40 -1.56 16 12 C -0.25 -5.29 10.05 -39.29 -0.39 -5.68 16 13 C 0.01 0.31 9.54 -39.66 -0.38 -0.07 16 14 C -0.77 -17.73 5.81 -38.87 -0.23 -17.96 16 15 S 2.69 57.26 4.73 -107.50 -0.51 56.75 16 16 O -0.99 -21.06 13.89 -57.18 -0.79 -21.85 16 17 O -0.95 -22.96 16.49 -57.18 -0.94 -23.90 16 18 N -1.06 -18.87 4.97 32.34 0.16 -18.71 16 19 C 0.23 4.07 6.28 -83.93 -0.53 3.55 16 20 C -0.20 -3.46 9.26 -39.31 -0.36 -3.82 16 21 C -0.06 -0.79 10.01 -39.71 -0.40 -1.19 16 22 C -0.17 -2.36 10.06 -39.26 -0.39 -2.76 16 23 C 0.13 1.95 7.03 -38.98 -0.27 1.67 16 24 C -0.20 -3.24 6.19 -103.92 -0.64 -3.88 16 25 C -0.11 -1.43 7.09 -26.52 -0.19 -1.62 16 26 C 0.05 0.63 8.01 38.06 0.30 0.94 16 27 O -0.31 -4.47 11.11 -20.22 -0.22 -4.69 16 28 H 0.30 7.84 6.73 -40.82 -0.27 7.56 16 29 H 0.11 2.58 7.02 -52.48 -0.37 2.21 16 30 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.11 2.19 7.32 -52.49 -0.38 1.80 16 33 H 0.42 6.50 8.91 -34.47 -0.31 6.20 16 34 H 0.17 2.94 5.07 -52.48 -0.27 2.68 16 35 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 36 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -29.91 346.03 -10.70 -40.61 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -4.11 Total: 15.79 kcal Atomic # 6 Polarization: -40.28 SS G_CDS: -5.10 Total: -45.38 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.86 Total: -37.50 kcal Atomic # 8 Polarization: -48.48 SS G_CDS: -1.96 Total: -50.44 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.10 Total: 14.96 kcal Atomic # 16 Polarization: 57.26 SS G_CDS: -0.51 Total: 56.75 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.91 -10.70 -40.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358491821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.050 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds