Wall clock time and date at job start Wed Apr 1 2020 04:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34710 * 117.00503 * 2 1 4 4 O 1.21466 * 119.99710 * 359.97438 * 3 2 1 5 5 C 1.47728 * 120.00368 * 180.02562 * 3 2 1 6 6 C 1.39630 * 120.13628 * 359.96609 * 5 3 2 7 7 C 1.38150 * 119.81810 * 180.02562 * 6 5 3 8 8 F 1.35101 * 119.94933 * 180.02562 * 7 6 5 9 9 C 1.38609 * 120.10109 * 359.72969 * 7 6 5 10 10 C 1.38306 * 120.27320 * 0.54700 * 9 7 6 11 11 S 1.76202 * 119.90691 * 179.72234 * 10 9 7 12 12 O 1.42105 * 106.40024 * 156.19044 * 11 10 9 13 13 O 1.42100 * 106.40054 * 23.27072 * 11 10 9 14 14 N 1.65603 * 107.21817 * 269.72908 * 11 10 9 15 15 C 1.46503 * 119.99904 * 270.00048 * 14 11 10 16 16 C 1.46496 * 119.99847 * 90.00356 * 14 11 10 17 17 H 1.09001 * 109.47459 * 359.97438 * 16 14 11 18 18 C 1.53006 * 109.46995 * 240.00000 * 16 14 11 19 19 C 1.50697 * 109.47428 * 119.99747 * 16 14 11 20 20 H 1.08001 * 119.99890 * 0.02562 * 19 16 14 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 16 14 22 22 N 1.31510 * 119.99600 * 0.02562 * 21 19 16 23 23 Si 1.86805 * 120.00227 * 180.02562 * 21 19 16 24 24 H 1.48494 * 109.46938 * 59.99973 * 23 21 19 25 25 H 1.48494 * 109.46914 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.46873 * 299.99981 * 23 21 19 27 27 C 1.37967 * 120.18138 * 359.45382 * 10 9 7 28 28 H 1.09006 * 109.46738 * 60.00532 * 1 2 3 29 29 H 1.08998 * 109.47331 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47410 * 300.01177 * 1 2 3 31 31 H 1.08002 * 120.08664 * 0.02562 * 6 5 3 32 32 H 1.07996 * 119.85909 * 180.27310 * 9 7 6 33 33 H 1.08997 * 109.46807 * 269.99911 * 15 14 11 34 34 H 1.08998 * 109.47196 * 30.00196 * 15 14 11 35 35 H 1.09000 * 109.46808 * 150.00575 * 15 14 11 36 36 H 1.09001 * 109.47002 * 299.99701 * 18 16 14 37 37 H 1.08993 * 109.46955 * 60.00138 * 18 16 14 38 38 H 1.09000 * 109.47050 * 179.97438 * 18 16 14 39 39 H 0.97006 * 120.00212 * 179.97438 * 22 21 19 40 40 H 1.08000 * 120.05448 * 180.24586 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2189 -0.0005 5 6 3.5389 1.2775 -0.0006 6 6 4.3021 0.1083 -0.0004 7 6 5.6813 0.1882 -0.0004 8 9 6.4224 -0.9414 -0.0008 9 6 6.3059 1.4256 -0.0062 10 6 5.5539 2.5863 -0.0007 11 16 6.3580 4.1541 -0.0008 12 8 5.4290 5.0814 -0.5453 13 8 7.6531 3.9407 -0.5452 14 7 6.5816 4.5904 1.5810 15 6 5.5516 5.3624 2.2806 16 6 7.8095 4.2044 2.2807 17 1 8.4509 3.6394 1.6043 18 6 7.4559 3.3374 3.4908 19 6 8.5339 5.4420 2.7439 20 1 8.1208 6.4184 2.5381 21 6 9.7236 5.3278 3.4314 22 7 10.2264 4.1388 3.6824 23 14 10.6212 6.8619 4.0062 24 1 9.7468 7.6309 4.9277 25 1 11.8659 6.4706 4.7153 26 1 10.9648 7.7035 2.8320 27 6 4.1758 2.5199 -0.0006 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8898 31 1 3.8155 -0.8559 -0.0003 32 1 7.3843 1.4835 -0.0107 33 1 5.7442 6.4272 2.1498 34 1 4.5722 5.1171 1.8700 35 1 5.5723 5.1172 3.3425 36 1 6.8144 3.9021 4.1673 37 1 6.9320 2.4423 3.1557 38 1 8.3695 3.0499 4.0111 39 1 11.0636 4.0584 4.1658 40 1 3.5906 3.4275 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360220796.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:08 Heat of formation + Delta-G solvation = -184.676405 kcal Electronic energy + Delta-G solvation = -28651.166401 eV Core-core repulsion = 24279.647635 eV Total energy + Delta-G solvation = -4371.518765 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.15055 -41.81451 -39.95815 -38.45005 -37.94386 -37.62800 -36.98758 -34.53654 -33.26936 -32.06302 -30.92657 -28.80355 -27.29220 -27.03240 -25.75826 -24.61493 -22.68612 -22.36603 -20.46482 -19.48022 -18.74323 -18.61101 -18.27155 -17.67988 -17.59454 -17.54745 -17.38960 -16.93622 -16.90491 -16.81468 -16.25094 -15.28322 -14.90590 -14.78875 -14.68013 -14.59738 -14.52798 -13.81306 -13.70550 -13.63678 -13.50891 -13.39854 -13.18450 -13.15422 -12.99301 -12.98226 -12.77913 -12.60004 -12.43033 -12.21965 -12.14379 -11.90976 -11.88356 -11.74350 -11.16230 -10.90146 -10.48361 -10.26000 -9.71439 -8.10266 -6.23313 -0.97965 -0.71498 -0.50525 1.01822 1.41766 1.45950 1.47786 1.54413 1.89915 2.18419 2.45779 2.66828 2.70839 3.13456 3.18780 3.44233 3.51829 3.65527 3.73734 3.97957 4.06052 4.26171 4.31083 4.35247 4.43654 4.57620 4.65994 4.69856 4.75235 4.84278 4.98093 5.02613 5.11914 5.12431 5.18683 5.29036 5.62233 5.70078 5.86366 6.11442 6.30171 6.45517 6.83449 7.45519 8.93851 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.016447 B = 0.003389 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.051114 B = 8261.191932 C = 8781.389816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.520 3.480 4 O -0.520 6.520 5 C -0.122 4.122 6 C -0.026 4.026 7 C 0.075 3.925 8 F -0.126 7.126 9 C -0.025 4.025 10 C -0.658 4.658 11 S 2.692 3.308 12 O -0.975 6.975 13 O -0.980 6.980 14 N -0.984 5.984 15 C 0.096 3.904 16 C 0.269 3.731 17 H 0.035 0.965 18 C -0.140 4.140 19 C -0.538 4.538 20 H 0.059 0.941 21 C 0.020 3.980 22 N -0.913 5.913 23 Si 0.953 3.047 24 H -0.267 1.267 25 H -0.283 1.283 26 H -0.279 1.279 27 C 0.029 3.971 28 H 0.066 0.934 29 H 0.139 0.861 30 H 0.066 0.934 31 H 0.193 0.807 32 H 0.157 0.843 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.045 0.955 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.265 0.735 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.449 -11.518 -4.925 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.265 6.265 3 C 0.365 3.635 4 O -0.410 6.410 5 C -0.125 4.125 6 C -0.045 4.045 7 C 0.055 3.945 8 F -0.104 7.104 9 C -0.045 4.045 10 C -0.744 4.744 11 S 2.783 3.217 12 O -0.965 6.965 13 O -0.971 6.971 14 N -0.824 5.824 15 C -0.049 4.049 16 C 0.166 3.834 17 H 0.052 0.948 18 C -0.200 4.200 19 C -0.578 4.578 20 H 0.078 0.922 21 C -0.180 4.180 22 N -0.552 5.552 23 Si 0.779 3.221 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.204 1.204 27 C 0.009 3.991 28 H 0.085 0.915 29 H 0.157 0.843 30 H 0.085 0.915 31 H 0.210 0.790 32 H 0.174 0.826 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -17.284 -10.900 -5.564 21.178 hybrid contribution 0.613 0.144 0.607 0.874 sum -16.671 -10.756 -4.957 20.450 Atomic orbital electron populations 1.23695 0.73453 1.06303 1.03022 1.86513 1.25809 1.30647 1.83576 1.20767 0.88184 0.82121 0.72453 1.90878 1.66835 1.36890 1.46407 1.18950 0.90134 0.93784 1.09588 1.21926 0.91107 1.00860 0.90557 1.17450 0.89564 0.81998 1.05511 1.91578 1.76560 1.48253 1.94010 1.21334 1.02140 0.90521 0.90503 1.30947 1.04684 1.21391 1.17396 1.01808 0.72802 0.73924 0.73159 1.93525 1.65078 1.60448 1.77427 1.93550 1.39459 1.86584 1.77470 1.57313 1.27764 1.66642 1.30691 1.21483 0.88695 0.95540 0.99174 1.18537 0.79508 0.94532 0.90854 0.94755 1.21972 1.01337 0.97334 0.99323 1.21602 1.06666 0.93395 1.36144 0.92235 1.25591 0.97707 0.98735 0.95941 1.69951 1.20458 1.23478 1.41286 0.85683 0.78036 0.79982 0.78378 1.19207 1.20837 1.20427 1.21125 0.91779 0.99055 0.87107 0.91512 0.84338 0.91541 0.79032 0.82556 0.93032 0.90015 0.89985 0.93617 0.94802 0.91154 0.92587 0.82040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.35 -5.62 9.82 -56.20 -0.55 -6.17 16 3 C 0.52 11.28 7.90 70.33 0.56 11.83 16 4 O -0.52 -13.99 16.13 19.95 0.32 -13.67 16 5 C -0.12 -2.73 5.87 -20.10 -0.12 -2.84 16 6 C -0.03 -0.49 9.60 22.59 0.22 -0.27 16 7 C 0.07 1.74 7.29 22.34 0.16 1.91 16 8 F -0.13 -2.92 17.26 44.97 0.78 -2.14 16 9 C -0.02 -0.71 9.50 22.37 0.21 -0.49 16 10 C -0.66 -19.77 5.97 22.22 0.13 -19.63 16 11 S 2.69 101.35 5.64 -56.49 -0.32 101.03 16 12 O -0.97 -37.79 16.35 -128.00 -2.09 -39.88 16 13 O -0.98 -43.66 15.83 -128.00 -2.03 -45.69 16 14 N -0.98 -38.92 3.06 -520.45 -1.59 -40.51 16 15 C 0.10 3.17 9.53 127.77 1.22 4.39 16 16 C 0.27 12.72 2.62 44.25 0.12 12.84 16 17 H 0.03 1.81 6.91 -2.39 -0.02 1.79 16 18 C -0.14 -6.06 8.95 71.98 0.64 -5.42 16 19 C -0.54 -28.29 8.37 25.60 0.21 -28.08 16 20 H 0.06 3.10 7.65 -2.91 -0.02 3.07 16 21 C 0.02 1.08 5.30 84.66 0.45 1.53 16 22 N -0.91 -49.97 11.32 21.45 0.24 -49.72 16 23 Si 0.95 42.42 29.54 68.60 2.03 44.45 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 27 C 0.03 0.76 9.06 22.54 0.20 0.97 16 28 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.19 2.28 7.61 -2.91 -0.02 2.26 16 32 H 0.16 4.61 7.60 -2.91 -0.02 4.59 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 2.18 7.79 -2.39 -0.02 2.16 16 35 H 0.08 2.58 6.43 -2.39 -0.02 2.57 16 36 H 0.04 1.84 6.66 -2.39 -0.02 1.83 16 37 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 38 H 0.07 3.43 6.07 -2.39 -0.01 3.42 16 39 H 0.26 13.86 8.31 -92.70 -0.77 13.09 16 40 H 0.16 4.21 7.20 -2.91 -0.02 4.19 16 Total: -1.00 -67.55 359.71 3.07 -64.47 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 1.08 Total: 9.63 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: 5.21 Total: -21.80 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -1.35 Total: -90.23 kcal Atomic # 8 Polarization: -101.06 SS G_CDS: -4.35 Total: -105.41 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.78 Total: -2.14 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 101.35 SS G_CDS: -0.32 Total: 101.03 kcal Total: -67.55 3.07 -64.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360220796.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.205 kcal (2) G-P(sol) polarization free energy of solvation -67.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds