Wall clock time and date at job start Wed Apr 1 2020 04:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00018 * 2 1 4 4 O 1.20826 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00046 * 180.02562 * 3 2 1 6 6 C 1.50703 * 109.47064 * 179.97438 * 5 3 2 7 7 C 1.38226 * 120.01320 * 264.72690 * 6 5 3 8 8 C 1.38219 * 120.02514 * 179.72161 * 7 6 5 9 9 C 1.38265 * 120.05117 * 0.55253 * 8 7 6 10 10 S 1.76199 * 119.98681 * 179.70085 * 9 8 7 11 11 O 1.42095 * 106.40379 * 23.56181 * 10 9 8 12 12 O 1.42102 * 106.40210 * 156.48205 * 10 9 8 13 13 N 1.65603 * 107.21996 * 270.01708 * 10 9 8 14 14 C 1.46497 * 119.99669 * 65.00126 * 13 10 9 15 15 H 1.09001 * 109.47278 * 335.00141 * 14 13 10 16 16 C 1.53002 * 109.47428 * 94.99733 * 14 13 10 17 17 C 1.50697 * 109.47263 * 214.99984 * 14 13 10 18 18 H 1.08002 * 119.99744 * 0.02562 * 17 14 13 19 19 C 1.37875 * 120.00144 * 179.97438 * 17 14 13 20 20 N 1.31516 * 120.00240 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 120.00039 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47450 * 60.00213 * 21 19 17 23 23 H 1.48507 * 109.47152 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47295 * 300.00094 * 21 19 17 25 25 C 1.38174 * 120.02693 * 359.72008 * 9 8 7 26 26 C 1.38434 * 120.01316 * 85.00017 * 6 5 3 27 27 F 1.35103 * 120.02608 * 0.02562 * 26 6 5 28 28 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47630 * 300.00318 * 1 2 3 30 30 H 1.08998 * 109.47321 * 60.00129 * 1 2 3 31 31 H 1.09002 * 109.47060 * 299.99765 * 5 3 2 32 32 H 1.09001 * 109.47380 * 59.99853 * 5 3 2 33 33 H 1.08008 * 119.98210 * 359.97438 * 7 6 5 34 34 H 1.07999 * 119.97479 * 180.27304 * 8 7 6 35 35 H 0.96995 * 120.00341 * 245.00376 * 13 10 9 36 36 H 1.09002 * 109.46935 * 300.00638 * 16 14 13 37 37 H 1.09001 * 109.46558 * 59.99966 * 16 14 13 38 38 H 1.08997 * 109.47321 * 179.97438 * 16 14 13 39 39 H 0.97003 * 120.00521 * 179.97438 * 20 19 17 40 40 H 1.07995 * 120.01691 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 3.9935 2.7201 -0.0011 7 6 4.2946 3.3516 -1.1932 8 6 4.6809 4.6787 -1.1945 9 6 4.7778 5.3728 -0.0026 10 16 5.2781 7.0623 -0.0056 11 8 4.9752 7.5682 -1.2984 12 8 4.7687 7.6337 1.1916 13 7 6.9283 7.0852 0.1308 14 6 7.7595 6.5292 -0.9398 15 1 7.1884 5.7838 -1.4933 16 6 8.1874 7.6510 -1.8881 17 6 8.9825 5.8828 -0.3420 18 1 9.1261 5.8856 0.7284 19 6 9.9177 5.2871 -1.1615 20 7 9.7426 5.2834 -2.4650 21 14 11.4334 4.4853 -0.4205 22 1 11.0176 3.3966 0.4999 23 1 12.2760 3.9218 -1.5058 24 1 12.2119 5.5005 0.3335 25 6 4.4828 4.7420 1.1908 26 6 4.0901 3.4140 1.1929 27 9 3.8019 2.7960 2.3592 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 3.9563 0.7806 0.8892 32 1 3.9557 0.7809 -0.8908 33 1 4.2239 2.8089 -2.1244 34 1 4.9117 5.1726 -2.1268 35 1 7.3446 7.4666 0.9195 36 1 7.3027 8.1185 -2.3204 37 1 8.7585 8.3964 -1.3346 38 1 8.8062 7.2374 -2.6844 39 1 10.4007 4.8646 -3.0416 40 1 4.5581 5.2845 2.1216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420672348.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:27 Heat of formation + Delta-G solvation = -181.311688 kcal Electronic energy + Delta-G solvation = -28337.020493 eV Core-core repulsion = 23965.647632 eV Total energy + Delta-G solvation = -4371.372860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.98825 -40.79494 -39.05677 -36.80524 -36.75468 -35.50079 -35.37781 -33.47077 -32.25603 -30.68680 -29.18110 -28.33027 -27.25908 -25.26419 -23.22811 -22.85526 -21.03778 -20.98105 -19.29288 -18.02807 -17.97099 -17.37665 -17.09993 -16.89637 -16.44667 -16.15052 -15.95714 -15.59897 -15.27858 -15.17152 -14.63830 -14.03132 -13.90332 -13.83041 -13.65021 -13.31941 -12.70098 -12.55483 -12.49939 -12.46474 -12.28630 -12.06876 -11.76385 -11.72546 -11.65628 -11.47086 -11.20240 -11.10997 -11.01813 -10.83210 -10.64521 -10.62260 -10.32995 -10.16315 -9.35518 -9.24351 -8.79584 -8.67618 -8.37001 -6.19090 -4.27511 0.54892 0.96689 1.15775 1.92322 2.39762 3.21926 3.26958 3.27361 3.30452 3.67152 4.07802 4.13695 4.23446 4.30029 4.43769 4.60309 4.72689 4.79656 4.87837 5.03335 5.09399 5.12693 5.16907 5.21079 5.31338 5.51206 5.79981 5.94069 6.05046 6.07108 6.10053 6.25603 6.74433 6.77632 7.00236 7.04197 7.44536 7.52232 7.65117 7.74696 7.97872 8.21182 8.75450 9.39218 10.86344 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011951 B = 0.003593 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.398965 B = 7792.006881 C = 9009.660605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.463 3.537 4 O -0.495 6.495 5 C -0.077 4.077 6 C -0.069 4.069 7 C -0.096 4.096 8 C -0.018 4.018 9 C -0.634 4.634 10 S 2.690 3.310 11 O -0.956 6.956 12 O -0.978 6.978 13 N -1.097 6.097 14 C 0.274 3.726 15 H 0.042 0.958 16 C -0.159 4.159 17 C -0.528 4.528 18 H 0.064 0.936 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 C -0.049 4.049 26 C 0.091 3.909 27 F -0.136 7.136 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.411 0.589 36 H 0.026 0.974 37 H 0.033 0.967 38 H 0.092 0.908 39 H 0.265 0.735 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.612 -9.785 3.091 16.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.305 3.695 4 O -0.381 6.381 5 C -0.115 4.115 6 C -0.070 4.070 7 C -0.115 4.115 8 C -0.038 4.038 9 C -0.719 4.719 10 S 2.776 3.224 11 O -0.946 6.946 12 O -0.968 6.968 13 N -0.859 5.859 14 C 0.170 3.830 15 H 0.059 0.941 16 C -0.219 4.219 17 C -0.567 4.567 18 H 0.082 0.918 19 C -0.137 4.137 20 N -0.524 5.524 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.069 4.069 26 C 0.071 3.929 27 F -0.115 7.115 28 H 0.120 0.880 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.245 0.755 36 H 0.045 0.955 37 H 0.052 0.948 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.426 -8.972 2.718 16.375 hybrid contribution 0.933 -1.274 0.963 1.850 sum -12.493 -10.246 3.681 16.571 Atomic orbital electron populations 1.23285 0.76059 1.03727 1.02744 1.86488 1.23646 1.33200 1.84304 1.23513 0.91646 0.81552 0.72773 1.90727 1.66950 1.36221 1.44189 1.20284 0.88482 0.94813 1.07878 1.19464 1.00026 0.94511 0.93015 1.21008 0.98672 0.94907 0.96863 1.21033 0.91588 0.93774 0.97357 1.31239 1.14255 1.28055 0.98306 1.02014 0.73324 0.73417 0.73614 1.93579 1.83966 1.76353 1.40707 1.93534 1.79446 1.75913 1.47875 1.55571 1.23124 1.75483 1.31678 1.18565 0.90036 0.91292 0.83120 0.94059 1.22247 0.99998 0.98315 1.01295 1.21254 1.05281 1.36501 0.93694 0.91785 1.24898 0.98147 0.95827 0.94832 1.69860 1.35989 1.43801 1.02737 0.86545 0.82429 0.79650 0.78710 1.20217 1.21154 1.20121 1.20769 0.95003 0.92618 0.98527 1.17397 1.02942 0.91600 0.80966 1.91485 1.91276 1.82621 1.46101 0.87983 0.91811 0.91759 0.85937 0.85493 0.84025 0.83026 0.75468 0.95469 0.94816 0.88923 0.92469 0.83009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.59 10.56 -39.26 -0.41 -4.00 16 3 C 0.46 5.46 7.95 36.01 0.29 5.74 16 4 O -0.49 -7.49 15.78 -18.75 -0.30 -7.78 16 5 C -0.08 -0.78 5.72 -29.03 -0.17 -0.94 16 6 C -0.07 -0.94 4.38 -104.55 -0.46 -1.39 16 7 C -0.10 -1.31 9.68 -39.59 -0.38 -1.69 16 8 C -0.02 -0.29 8.90 -39.58 -0.35 -0.64 16 9 C -0.63 -10.83 5.82 -39.60 -0.23 -11.06 16 10 S 2.69 49.43 5.65 -107.50 -0.61 48.82 16 11 O -0.96 -19.55 16.54 -57.17 -0.95 -20.49 16 12 O -0.98 -18.91 17.28 -57.17 -0.99 -19.90 16 13 N -1.10 -21.16 5.46 -5.88 -0.03 -21.19 16 14 C 0.27 6.24 2.76 -69.08 -0.19 6.05 16 15 H 0.04 0.97 7.23 -51.93 -0.38 0.60 16 16 C -0.16 -3.66 9.29 37.16 0.35 -3.32 16 17 C -0.53 -13.09 8.76 -34.44 -0.30 -13.39 16 18 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 19 C 0.07 1.67 5.30 -17.82 -0.09 1.58 16 20 N -0.89 -23.14 11.32 55.43 0.63 -22.51 16 21 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 C -0.05 -0.80 9.50 -39.51 -0.38 -1.17 16 26 C 0.09 1.39 7.24 -39.42 -0.29 1.10 16 27 F -0.14 -2.00 16.57 2.25 0.04 -1.96 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 30 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 31 H 0.12 1.05 7.79 -51.93 -0.40 0.65 16 32 H 0.13 0.90 8.05 -51.93 -0.42 0.48 16 33 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 34 H 0.15 2.32 7.62 -52.49 -0.40 1.92 16 35 H 0.41 7.18 8.83 -34.47 -0.30 6.88 16 36 H 0.03 0.59 7.64 -51.93 -0.40 0.19 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 39 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 40 H 0.15 2.23 7.62 -52.49 -0.40 1.83 16 LS Contribution 363.46 15.07 5.48 5.48 Total: -1.00 -32.33 363.46 -7.97 -40.30 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -4.67 Total: 6.27 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -1.14 Total: -17.81 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.60 Total: -43.70 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: -2.64 Total: -52.18 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 16 Polarization: 49.43 SS G_CDS: -0.61 Total: 48.82 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.33 -7.97 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420672348.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.011 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds