Wall clock time and date at job start Wed Apr 1 2020 04:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00018 * 2 1 4 4 O 1.20826 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00046 * 180.02562 * 3 2 1 6 6 C 1.50703 * 109.47064 * 179.97438 * 5 3 2 7 7 C 1.38226 * 120.01320 * 264.72690 * 6 5 3 8 8 C 1.38219 * 120.02514 * 179.72161 * 7 6 5 9 9 C 1.38265 * 120.05117 * 0.55253 * 8 7 6 10 10 S 1.76199 * 119.98681 * 179.70085 * 9 8 7 11 11 O 1.42095 * 106.40379 * 23.56181 * 10 9 8 12 12 O 1.42102 * 106.40210 * 156.48205 * 10 9 8 13 13 N 1.65603 * 107.21996 * 270.01708 * 10 9 8 14 14 C 1.46497 * 119.99669 * 65.00126 * 13 10 9 15 15 H 1.09001 * 109.47278 * 335.00141 * 14 13 10 16 16 C 1.53002 * 109.47428 * 94.99733 * 14 13 10 17 17 C 1.50697 * 109.47263 * 214.99984 * 14 13 10 18 18 H 1.08002 * 119.99744 * 0.02562 * 17 14 13 19 19 C 1.37875 * 120.00144 * 179.97438 * 17 14 13 20 20 N 1.31516 * 120.00240 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 120.00039 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47450 * 60.00213 * 21 19 17 23 23 H 1.48507 * 109.47152 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47295 * 300.00094 * 21 19 17 25 25 C 1.38174 * 120.02693 * 359.72008 * 9 8 7 26 26 C 1.38434 * 120.01316 * 85.00017 * 6 5 3 27 27 F 1.35103 * 120.02608 * 0.02562 * 26 6 5 28 28 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47630 * 300.00318 * 1 2 3 30 30 H 1.08998 * 109.47321 * 60.00129 * 1 2 3 31 31 H 1.09002 * 109.47060 * 299.99765 * 5 3 2 32 32 H 1.09001 * 109.47380 * 59.99853 * 5 3 2 33 33 H 1.08008 * 119.98210 * 359.97438 * 7 6 5 34 34 H 1.07999 * 119.97479 * 180.27304 * 8 7 6 35 35 H 0.96995 * 120.00341 * 245.00376 * 13 10 9 36 36 H 1.09002 * 109.46935 * 300.00638 * 16 14 13 37 37 H 1.09001 * 109.46558 * 59.99966 * 16 14 13 38 38 H 1.08997 * 109.47321 * 179.97438 * 16 14 13 39 39 H 0.97003 * 120.00521 * 179.97438 * 20 19 17 40 40 H 1.07995 * 120.01691 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 3.9935 2.7201 -0.0011 7 6 4.2946 3.3516 -1.1932 8 6 4.6809 4.6787 -1.1945 9 6 4.7778 5.3728 -0.0026 10 16 5.2781 7.0623 -0.0056 11 8 4.9752 7.5682 -1.2984 12 8 4.7687 7.6337 1.1916 13 7 6.9283 7.0852 0.1308 14 6 7.7595 6.5292 -0.9398 15 1 7.1884 5.7838 -1.4933 16 6 8.1874 7.6510 -1.8881 17 6 8.9825 5.8828 -0.3420 18 1 9.1261 5.8856 0.7284 19 6 9.9177 5.2871 -1.1615 20 7 9.7426 5.2834 -2.4650 21 14 11.4334 4.4853 -0.4205 22 1 11.0176 3.3966 0.4999 23 1 12.2760 3.9218 -1.5058 24 1 12.2119 5.5005 0.3335 25 6 4.4828 4.7420 1.1908 26 6 4.0901 3.4140 1.1929 27 9 3.8019 2.7960 2.3592 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 3.9563 0.7806 0.8892 32 1 3.9557 0.7809 -0.8908 33 1 4.2239 2.8089 -2.1244 34 1 4.9117 5.1726 -2.1268 35 1 7.3446 7.4666 0.9195 36 1 7.3027 8.1185 -2.3204 37 1 8.7585 8.3964 -1.3346 38 1 8.8062 7.2374 -2.6844 39 1 10.4007 4.8646 -3.0416 40 1 4.5581 5.2845 2.1216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420672348.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:26 Heat of formation + Delta-G solvation = -202.772868 kcal Electronic energy + Delta-G solvation = -28337.951119 eV Core-core repulsion = 23965.647632 eV Total energy + Delta-G solvation = -4372.303487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.14178 -41.68395 -40.16442 -38.36493 -37.63417 -37.23717 -36.94694 -34.50613 -34.09431 -31.84796 -30.11631 -30.09005 -28.01162 -27.18742 -24.35861 -23.97408 -22.80602 -21.92191 -20.70623 -19.47675 -18.93216 -18.82339 -18.15463 -17.91845 -17.76403 -17.41669 -17.14429 -17.00911 -16.75184 -16.32478 -16.23952 -15.36203 -15.01691 -14.73188 -14.62224 -14.49980 -14.44151 -14.03862 -13.72754 -13.48662 -13.46231 -13.36185 -13.28810 -13.15970 -12.98440 -12.94409 -12.78505 -12.67562 -12.38908 -12.19310 -12.01276 -11.92188 -11.86365 -11.75487 -11.07999 -10.57055 -10.46967 -10.10468 -9.97457 -8.10104 -6.23956 -0.70314 -0.43866 -0.02247 1.05497 1.48866 1.50443 1.56620 1.57948 2.04697 2.29013 2.48701 2.74331 2.94631 3.19262 3.19984 3.30294 3.58295 3.82000 3.85190 4.05581 4.21181 4.27868 4.30473 4.33623 4.47201 4.53152 4.64966 4.70072 4.80881 4.88632 4.95263 4.97534 5.14662 5.20295 5.26851 5.60278 5.62938 5.78517 6.05812 6.11366 6.42968 6.60177 6.85676 7.45471 8.94699 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011951 B = 0.003593 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.398965 B = 7792.006881 C = 9009.660605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.467 3.533 4 O -0.536 6.536 5 C -0.077 4.077 6 C -0.063 4.063 7 C -0.093 4.093 8 C -0.036 4.036 9 C -0.648 4.648 10 S 2.707 3.293 11 O -0.980 6.980 12 O -0.989 6.989 13 N -1.096 6.096 14 C 0.277 3.723 15 H 0.033 0.967 16 C -0.154 4.154 17 C -0.541 4.541 18 H 0.066 0.934 19 C 0.024 3.976 20 N -0.910 5.910 21 Si 0.956 3.044 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.064 4.064 26 C 0.079 3.921 27 F -0.134 7.134 28 H 0.135 0.865 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.142 0.858 32 H 0.165 0.835 33 H 0.179 0.821 34 H 0.152 0.848 35 H 0.418 0.582 36 H 0.031 0.969 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.266 0.734 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.707 -12.046 3.362 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C 0.311 3.689 4 O -0.426 6.426 5 C -0.113 4.113 6 C -0.065 4.065 7 C -0.112 4.112 8 C -0.055 4.055 9 C -0.736 4.736 10 S 2.797 3.203 11 O -0.970 6.970 12 O -0.979 6.979 13 N -0.858 5.858 14 C 0.172 3.828 15 H 0.051 0.949 16 C -0.214 4.214 17 C -0.580 4.580 18 H 0.085 0.915 19 C -0.177 4.177 20 N -0.548 5.548 21 Si 0.782 3.218 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.084 4.084 26 C 0.059 3.941 27 F -0.113 7.113 28 H 0.153 0.847 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.159 0.841 32 H 0.183 0.817 33 H 0.196 0.804 34 H 0.169 0.831 35 H 0.254 0.746 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.513 -11.212 3.009 17.814 hybrid contribution 0.850 -0.652 0.892 1.394 sum -12.663 -11.864 3.901 17.785 Atomic orbital electron populations 1.23567 0.74650 1.05851 1.02442 1.86484 1.25025 1.32104 1.83688 1.23777 0.92171 0.81403 0.71563 1.90723 1.67940 1.37559 1.46357 1.20463 0.87514 0.92698 1.10670 1.19871 0.98145 0.96280 0.92155 1.21439 0.97149 0.94051 0.98517 1.21256 0.92189 0.95120 0.96957 1.30864 1.16315 1.27018 0.99357 1.01240 0.72600 0.73730 0.72713 1.93540 1.84133 1.77593 1.41765 1.93512 1.79365 1.76824 1.48201 1.55381 1.23365 1.75699 1.31338 1.18338 0.89855 0.90952 0.83660 0.94898 1.22167 0.99864 0.98435 1.00923 1.21558 1.05990 1.36523 0.93950 0.91545 1.25576 1.00554 0.96399 0.95179 1.69967 1.36781 1.44455 1.03644 0.85648 0.79413 0.78807 0.77952 1.19735 1.21071 1.19952 1.20911 0.95552 0.93480 0.98497 1.17573 1.03208 0.91522 0.81796 1.91485 1.91273 1.82436 1.46079 0.84664 0.92367 0.91904 0.84061 0.81737 0.80372 0.83053 0.74625 0.95006 0.94506 0.90813 0.92497 0.82459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.36 -6.20 10.56 -51.41 -0.54 -6.74 16 3 C 0.47 9.94 7.95 71.24 0.57 10.50 16 4 O -0.54 -15.62 15.78 21.97 0.35 -15.27 16 5 C -0.08 -1.29 5.72 29.10 0.17 -1.13 16 6 C -0.06 -1.58 4.38 -19.82 -0.09 -1.67 16 7 C -0.09 -2.36 9.68 22.26 0.22 -2.14 16 8 C -0.04 -1.13 8.90 22.27 0.20 -0.93 16 9 C -0.65 -22.15 5.82 22.26 0.13 -22.02 16 10 S 2.71 100.60 5.65 -56.49 -0.32 100.28 16 11 O -0.98 -40.69 16.54 -128.00 -2.12 -42.80 16 12 O -0.99 -38.50 17.28 -128.00 -2.21 -40.71 16 13 N -1.10 -42.52 5.46 -172.53 -0.94 -43.46 16 14 C 0.28 12.69 2.76 44.25 0.12 12.81 16 15 H 0.03 1.57 7.23 -2.39 -0.02 1.55 16 16 C -0.15 -7.17 9.29 71.98 0.67 -6.50 16 17 C -0.54 -26.64 8.76 25.60 0.22 -26.42 16 18 H 0.07 3.16 7.81 -2.91 -0.02 3.14 16 19 C 0.02 1.19 5.30 84.65 0.45 1.64 16 20 N -0.91 -47.46 11.32 21.45 0.24 -47.22 16 21 Si 0.96 39.94 29.54 68.60 2.03 41.97 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.29 -11.79 7.11 99.48 0.71 -11.09 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 25 C -0.06 -2.07 9.50 22.31 0.21 -1.86 16 26 C 0.08 2.33 7.24 22.38 0.16 2.49 16 27 F -0.13 -3.76 16.57 44.97 0.75 -3.02 16 28 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 30 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 31 H 0.14 1.92 7.79 -2.39 -0.02 1.90 16 32 H 0.17 1.55 8.05 -2.39 -0.02 1.53 16 33 H 0.18 3.06 8.06 -2.91 -0.02 3.04 16 34 H 0.15 4.65 7.62 -2.91 -0.02 4.63 16 35 H 0.42 14.64 8.83 -96.75 -0.85 13.79 16 36 H 0.03 1.39 7.64 -2.39 -0.02 1.38 16 37 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 39 H 0.27 13.25 8.31 -92.71 -0.77 12.48 16 40 H 0.16 4.67 7.62 -2.91 -0.02 4.65 16 Total: -1.00 -68.67 363.46 1.69 -66.98 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.24 Total: 23.67 kcal Atomic # 6 Polarization: -37.90 SS G_CDS: 4.22 Total: -33.68 kcal Atomic # 7 Polarization: -89.98 SS G_CDS: -0.70 Total: -90.68 kcal Atomic # 8 Polarization: -101.00 SS G_CDS: -4.53 Total: -105.53 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.75 Total: -3.02 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Atomic # 16 Polarization: 100.60 SS G_CDS: -0.32 Total: 100.28 kcal Total: -68.67 1.69 -66.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420672348.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.790 kcal (2) G-P(sol) polarization free energy of solvation -68.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds