Wall clock time and date at job start Wed Apr 1 2020 04:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34712 * 117.00219 * 2 1 4 4 O 1.21470 * 119.99649 * 0.02562 * 3 2 1 5 5 C 1.47732 * 120.00085 * 180.02562 * 3 2 1 6 6 C 1.39650 * 120.13531 * 359.97438 * 5 3 2 7 7 C 1.37932 * 119.89387 * 180.02562 * 6 5 3 8 8 C 1.38343 * 120.18424 * 0.02562 * 7 6 5 9 9 S 1.76197 * 119.86189 * 180.27819 * 8 7 6 10 10 O 1.42107 * 106.40476 * 228.26913 * 9 8 7 11 11 O 1.42096 * 106.40399 * 1.19200 * 9 8 7 12 12 N 1.65604 * 107.21519 * 114.73067 * 9 8 7 13 13 C 1.46497 * 120.00085 * 269.99815 * 12 9 8 14 14 C 1.46495 * 120.00126 * 90.00352 * 12 9 8 15 15 H 1.09008 * 109.47068 * 359.97438 * 14 12 9 16 16 C 1.53006 * 109.47510 * 119.99750 * 14 12 9 17 17 C 1.50703 * 109.47345 * 239.99876 * 14 12 9 18 18 H 1.07996 * 119.99276 * 359.97438 * 17 14 12 19 19 C 1.37870 * 120.00057 * 179.97438 * 17 14 12 20 20 N 1.31515 * 120.00301 * 359.97438 * 19 17 14 21 21 Si 1.86807 * 119.99724 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47386 * 59.99780 * 21 19 17 23 23 H 1.48496 * 109.47077 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47003 * 299.99561 * 21 19 17 25 25 C 1.38565 * 120.27718 * 0.02562 * 8 7 6 26 26 F 1.35099 * 119.94771 * 179.97438 * 25 8 7 27 27 C 1.38196 * 120.09486 * 359.97294 * 25 8 7 28 28 H 1.09001 * 109.46756 * 299.99942 * 1 2 3 29 29 H 1.09002 * 109.47179 * 59.98863 * 1 2 3 30 30 H 1.08997 * 109.47542 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.04936 * 0.02562 * 6 5 3 32 32 H 1.08003 * 119.90716 * 180.02562 * 7 6 5 33 33 H 1.09004 * 109.46934 * 89.99891 * 13 12 9 34 34 H 1.08998 * 109.47561 * 210.00254 * 13 12 9 35 35 H 1.09001 * 109.47262 * 330.00310 * 13 12 9 36 36 H 1.08998 * 109.47313 * 179.97438 * 16 14 12 37 37 H 1.09002 * 109.46897 * 299.99839 * 16 14 12 38 38 H 1.08995 * 109.46978 * 60.00101 * 16 14 12 39 39 H 0.96997 * 119.99892 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.08677 * 180.02562 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5389 1.2776 -0.0006 6 6 4.3023 0.1081 -0.0006 7 6 5.6794 0.1861 -0.0006 8 6 6.3062 1.4194 0.0000 9 16 8.0659 1.5091 -0.0075 10 8 8.4250 2.4330 1.0108 11 8 8.5359 0.1685 -0.0414 12 7 8.5155 2.1987 -1.4444 13 6 8.7707 1.3543 -2.6140 14 6 8.6580 3.6532 -1.5459 15 1 8.4286 4.1089 -0.5826 16 6 10.0943 3.9983 -1.9447 17 6 7.7067 4.1796 -2.5894 18 1 7.0609 3.4987 -3.1238 19 6 7.6609 5.5304 -2.8618 20 7 8.4471 6.3596 -2.2107 21 14 6.4812 6.1829 -4.1549 22 1 5.0873 5.8476 -3.7676 23 1 6.6258 7.6572 -4.2579 24 1 6.7931 5.5626 -5.4676 25 6 5.5560 2.5844 0.0010 26 9 6.1751 3.7852 0.0021 27 6 4.1756 2.5197 0.0010 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.8150 -0.8557 -0.0006 32 1 6.2699 -0.7182 -0.0010 33 1 7.8459 1.2227 -3.1758 34 1 9.5174 1.8301 -3.2497 35 1 9.1385 0.3818 -2.2868 36 1 10.2002 5.0805 -2.0206 37 1 10.7824 3.6177 -1.1898 38 1 10.3234 3.5428 -2.9080 39 1 8.4146 7.3099 -2.4021 40 1 3.5910 3.4278 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530534689.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:19 Heat of formation + Delta-G solvation = -180.170224 kcal Electronic energy + Delta-G solvation = -29287.736552 eV Core-core repulsion = 24916.413189 eV Total energy + Delta-G solvation = -4371.323363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.22979 -41.83284 -39.86021 -38.38916 -37.92013 -37.68663 -37.00095 -34.50722 -33.11710 -32.00242 -30.90308 -28.84432 -27.30321 -26.98415 -25.91319 -24.13468 -22.62493 -22.43739 -20.24496 -19.68099 -19.00635 -18.41528 -18.34231 -18.31427 -17.58513 -17.51562 -17.19148 -16.90789 -16.77026 -16.29459 -15.62809 -15.27709 -15.17839 -14.82656 -14.67824 -14.57669 -14.53662 -14.11363 -13.73421 -13.55896 -13.45506 -13.24837 -13.18635 -13.18581 -12.91704 -12.81274 -12.76614 -12.60244 -12.31209 -12.24300 -12.12684 -11.91573 -11.89221 -11.80202 -11.15162 -10.86438 -10.45982 -10.11868 -9.68749 -8.06782 -6.19473 -1.16303 -0.64222 -0.14232 0.99102 1.34712 1.42640 1.44184 1.50094 1.90860 2.21027 2.45243 2.58825 2.89806 3.16557 3.22726 3.35838 3.54015 3.76979 3.91213 4.13643 4.24205 4.27101 4.32462 4.43423 4.64550 4.67929 4.73541 4.78327 4.82285 4.85302 4.99451 5.05336 5.07957 5.19018 5.20740 5.39663 5.63606 5.71434 5.89337 6.10941 6.31125 6.40973 6.87178 7.49027 8.97951 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011055 B = 0.004777 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.179047 B = 5859.907843 C = 7569.042001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.342 6.342 3 C 0.516 3.484 4 O -0.523 6.523 5 C -0.053 4.053 6 C -0.076 4.076 7 C -0.002 4.002 8 C -0.694 4.694 9 S 2.692 3.308 10 O -0.986 6.986 11 O -0.962 6.962 12 N -0.984 5.984 13 C 0.089 3.911 14 C 0.270 3.730 15 H 0.034 0.966 16 C -0.141 4.141 17 C -0.521 4.521 18 H 0.062 0.938 19 C 0.023 3.977 20 N -0.914 5.914 21 Si 0.944 3.056 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.266 1.266 25 C 0.176 3.824 26 F -0.118 7.118 27 C -0.125 4.125 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.143 0.857 31 H 0.197 0.803 32 H 0.190 0.810 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.023 0.977 38 H 0.048 0.952 39 H 0.262 0.738 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.792 -17.070 2.114 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.258 6.258 3 C 0.361 3.639 4 O -0.413 6.413 5 C -0.055 4.055 6 C -0.095 4.095 7 C -0.021 4.021 8 C -0.781 4.781 9 S 2.783 3.217 10 O -0.976 6.976 11 O -0.952 6.952 12 N -0.824 5.824 13 C -0.056 4.056 14 C 0.166 3.834 15 H 0.051 0.949 16 C -0.200 4.200 17 C -0.560 4.560 18 H 0.080 0.920 19 C -0.177 4.177 20 N -0.554 5.554 21 Si 0.771 3.229 22 H -0.205 1.205 23 H -0.213 1.213 24 H -0.191 1.191 25 C 0.156 3.844 26 F -0.096 7.096 27 C -0.145 4.145 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.161 0.839 31 H 0.214 0.786 32 H 0.207 0.793 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.042 0.958 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.425 -16.838 2.775 20.537 hybrid contribution -1.240 1.784 -0.831 2.326 sum -12.666 -15.054 1.944 19.769 Atomic orbital electron populations 1.23717 0.73449 1.06480 1.02881 1.86521 1.25751 1.30165 1.83346 1.20931 0.88427 0.82146 0.72442 1.90871 1.67093 1.37215 1.46093 1.19200 0.90107 0.94117 1.02040 1.21997 0.92822 0.99200 0.95460 1.21309 0.95653 0.95392 0.89706 1.31484 1.28888 0.99276 1.18425 1.01772 0.74003 0.72682 0.73284 1.93561 1.82346 1.64674 1.57062 1.93499 1.79010 1.35718 1.86982 1.57296 1.81443 1.16528 1.27174 1.21596 1.02265 0.93880 0.87873 1.18542 0.94229 0.73533 0.97113 0.94859 1.21971 0.96182 1.03030 0.98860 1.21463 1.21019 0.92426 1.21126 0.91968 1.25519 0.96994 0.97256 0.97892 1.69985 1.39381 1.03517 1.42470 0.85827 0.79532 0.77220 0.80342 1.20527 1.21316 1.19115 1.17149 0.91089 0.80140 0.96060 1.91746 1.82565 1.42822 1.92502 1.21276 0.92115 0.99911 1.01191 0.91591 0.91772 0.83934 0.78554 0.79288 0.92387 0.90120 0.89281 0.91090 0.95814 0.93256 0.92848 0.83033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.34 -5.81 9.82 -56.22 -0.55 -6.36 16 3 C 0.52 12.28 7.90 70.33 0.56 12.84 16 4 O -0.52 -15.58 16.14 19.93 0.32 -15.26 16 5 C -0.05 -1.33 5.87 -20.10 -0.12 -1.45 16 6 C -0.08 -1.46 9.62 22.54 0.22 -1.24 16 7 C 0.00 -0.04 9.53 22.22 0.21 0.17 16 8 C -0.69 -22.86 5.92 22.37 0.13 -22.72 16 9 S 2.69 102.42 5.33 -56.49 -0.30 102.12 16 10 O -0.99 -45.56 15.97 -128.00 -2.04 -47.60 16 11 O -0.96 -33.68 15.55 -128.00 -1.99 -35.67 16 12 N -0.98 -39.55 3.06 -520.44 -1.59 -41.14 16 13 C 0.09 2.83 9.90 127.77 1.26 4.10 16 14 C 0.27 13.17 1.93 44.25 0.09 13.26 16 15 H 0.03 1.87 5.85 -2.38 -0.01 1.86 16 16 C -0.14 -6.64 8.95 71.98 0.64 -6.00 16 17 C -0.52 -26.64 7.83 25.60 0.20 -26.44 16 18 H 0.06 3.08 7.65 -2.91 -0.02 3.06 16 19 C 0.02 1.24 5.30 84.65 0.45 1.69 16 20 N -0.91 -51.37 11.32 21.44 0.24 -51.13 16 21 Si 0.94 42.55 29.54 68.60 2.03 44.58 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 25 C 0.18 6.53 7.20 22.34 0.16 6.69 16 26 F -0.12 -5.41 13.88 44.97 0.62 -4.79 16 27 C -0.13 -3.97 9.57 22.58 0.22 -3.76 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.20 2.01 7.61 -2.91 -0.02 1.99 16 32 H 0.19 3.22 7.32 -2.91 -0.02 3.20 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 2.57 6.43 -2.39 -0.02 2.56 16 35 H 0.09 2.40 7.02 -2.39 -0.02 2.38 16 36 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 37 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 2.11 6.66 -2.39 -0.02 2.09 16 39 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 40 H 0.15 4.83 7.65 -2.91 -0.02 4.81 16 Total: -1.00 -70.80 353.28 3.04 -67.76 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 1.09 Total: 8.85 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: 5.22 Total: -21.36 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -1.35 Total: -92.27 kcal Atomic # 8 Polarization: -100.63 SS G_CDS: -4.27 Total: -104.90 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 0.62 Total: -4.79 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: 102.42 SS G_CDS: -0.30 Total: 102.12 kcal Total: -70.80 3.04 -67.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530534689.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.413 kcal (2) G-P(sol) polarization free energy of solvation -70.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds