Wall clock time and date at job start Wed Apr 1 2020 03:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99681 * 2 1 4 4 H 1.48497 * 109.47318 * 239.99818 * 3 2 1 5 5 H 1.48502 * 109.46893 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47221 * 119.99337 * 3 2 1 7 7 C 1.37868 * 120.00494 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00499 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00131 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47053 * 179.97438 * 9 7 2 11 11 S 1.81405 * 109.46779 * 180.02562 * 10 9 7 12 12 O 1.42097 * 110.54301 * 68.37645 * 11 10 9 13 13 O 1.42099 * 110.54121 * 291.62388 * 11 10 9 14 14 N 1.65597 * 104.44719 * 180.02562 * 11 10 9 15 15 C 1.46506 * 120.00079 * 90.00234 * 14 11 10 16 16 C 1.50701 * 109.46970 * 264.72396 * 15 14 11 17 17 O 1.20830 * 119.99880 * 359.97438 * 16 15 14 18 18 O 1.34223 * 120.00190 * 179.97438 * 16 15 14 19 19 C 1.46499 * 119.99926 * 269.72273 * 14 11 10 20 20 C 1.50704 * 109.46882 * 265.27515 * 19 14 11 21 21 C 1.38244 * 119.97513 * 269.72115 * 20 19 14 22 22 C 1.38200 * 120.02178 * 179.72707 * 21 20 19 23 23 C 1.38451 * 119.97500 * 0.57854 * 22 21 20 24 24 F 1.35107 * 120.02763 * 179.68009 * 23 22 21 25 25 C 1.38460 * 119.95123 * 359.69914 * 23 22 21 26 26 C 1.38193 * 119.97320 * 0.02562 * 25 23 22 27 27 H 0.97000 * 120.00325 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46778 * 60.00067 * 9 7 2 29 29 H 1.08996 * 109.46924 * 300.00358 * 9 7 2 30 30 H 1.09002 * 109.47221 * 60.00403 * 10 9 7 31 31 H 1.09001 * 109.47232 * 299.99742 * 10 9 7 32 32 H 1.08999 * 109.46864 * 24.71745 * 15 14 11 33 33 H 1.08999 * 109.46950 * 144.72128 * 15 14 11 34 34 H 0.96695 * 117.00235 * 179.97438 * 18 16 15 35 35 H 1.08991 * 109.47463 * 25.27752 * 19 14 11 36 36 H 1.09000 * 109.46878 * 145.27981 * 19 14 11 37 37 H 1.07999 * 119.98912 * 359.97438 * 21 20 19 38 38 H 1.07997 * 120.00895 * 180.25591 * 22 21 20 39 39 H 1.08005 * 120.01842 * 179.97438 * 25 23 22 40 40 H 1.08004 * 119.99345 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6967 1.2126 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2456 -3.6619 0.0005 11 16 1.3386 -5.2330 -0.0002 12 8 0.6651 -5.4194 -1.2375 13 8 0.6643 -5.4200 1.2365 14 7 2.5209 -6.3925 0.0006 15 6 3.0429 -6.9056 1.2697 16 6 4.2934 -6.1506 1.6404 17 8 4.7064 -5.2743 0.9183 18 8 4.9484 -6.4517 2.7726 19 6 3.0405 -6.9097 -1.2678 20 6 2.2996 -8.1688 -1.6381 21 6 2.7718 -9.3975 -1.2158 22 6 2.0901 -10.5523 -1.5500 23 6 0.9405 -10.4792 -2.3181 24 9 0.2767 -11.6080 -2.6509 25 6 0.4716 -9.2484 -2.7452 26 6 1.1518 -8.0945 -2.4051 27 1 -0.4850 0.8400 -0.0004 28 1 0.6249 -2.5571 -0.8897 29 1 0.6242 -2.5567 0.8902 30 1 2.8722 -3.6042 0.8906 31 1 2.8722 -3.6042 -0.8895 32 1 2.2940 -6.7736 2.0505 33 1 3.2758 -7.9652 1.1649 34 1 5.7455 -5.9404 2.9678 35 1 2.9008 -6.1629 -2.0492 36 1 4.1026 -7.1309 -1.1622 37 1 3.6716 -9.4548 -0.6212 38 1 2.4569 -11.5118 -1.2166 39 1 -0.4248 -9.1901 -3.3448 40 1 0.7861 -7.1343 -2.7377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548240430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:19 Heat of formation + Delta-G solvation = -181.980177 kcal Electronic energy + Delta-G solvation = -28381.139327 eV Core-core repulsion = 24009.737479 eV Total energy + Delta-G solvation = -4371.401848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.04955 -40.41714 -39.38796 -36.81923 -36.67209 -35.85002 -35.49293 -33.88678 -31.60553 -31.28896 -31.15502 -28.47409 -25.66814 -25.34686 -23.24791 -22.11260 -21.77655 -21.28826 -18.70595 -18.30116 -17.92913 -17.67362 -17.01174 -16.62303 -16.51438 -16.13969 -15.79398 -15.70814 -15.66586 -15.27028 -14.77773 -14.55485 -14.24011 -13.75209 -13.55363 -13.41156 -13.36535 -12.88012 -12.57766 -12.49558 -12.24242 -12.19222 -11.79283 -11.72164 -11.67515 -11.55452 -11.39768 -11.06078 -11.04251 -10.98692 -10.89355 -10.44453 -10.36656 -9.83552 -9.49274 -9.25713 -9.04681 -8.78105 -8.49970 -6.12311 -4.17543 0.54071 0.96247 1.08694 2.03520 2.54771 3.05064 3.27686 3.32185 3.34522 3.46350 4.07964 4.17493 4.34798 4.39127 4.43218 4.56071 4.62636 4.73445 4.90413 5.01705 5.11407 5.17212 5.22811 5.27577 5.46148 5.55049 5.64736 5.76990 5.82179 5.88626 5.94511 6.15218 6.25802 6.33092 6.41244 6.53462 6.73907 7.28881 7.34077 7.72748 7.81563 8.18101 8.85936 9.47142 10.98708 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.003255 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.284608 B = 8600.394923 C = 9924.837246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.576 4.576 11 S 2.581 3.419 12 O -0.954 6.954 13 O -0.962 6.962 14 N -0.984 5.984 15 C 0.125 3.875 16 C 0.450 3.550 17 O -0.496 6.496 18 O -0.518 6.518 19 C 0.167 3.833 20 C -0.121 4.121 21 C -0.078 4.078 22 C -0.161 4.161 23 C 0.098 3.902 24 F -0.143 7.143 25 C -0.156 4.156 26 C -0.064 4.064 27 H 0.265 0.735 28 H 0.033 0.967 29 H 0.031 0.969 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.139 0.861 33 H 0.122 0.878 34 H 0.411 0.589 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.764 -20.633 -0.358 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.558 4.558 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.710 4.710 11 S 2.681 3.319 12 O -0.944 6.944 13 O -0.953 6.953 14 N -0.816 5.816 15 C -0.003 4.003 16 C 0.289 3.711 17 O -0.383 6.383 18 O -0.329 6.329 19 C 0.042 3.958 20 C -0.123 4.123 21 C -0.097 4.097 22 C -0.180 4.180 23 C 0.079 3.921 24 F -0.122 7.122 25 C -0.175 4.175 26 C -0.082 4.082 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.156 0.844 33 H 0.140 0.860 34 H 0.270 0.730 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.416 -20.761 -0.660 22.056 hybrid contribution 1.520 1.316 0.121 2.014 sum 8.936 -19.445 -0.539 21.407 Atomic orbital electron populations 1.69941 1.06093 1.27304 1.49637 1.25058 0.94971 0.99500 0.94911 0.86529 0.79494 0.82501 0.78749 1.20042 1.21068 1.20099 1.20969 0.93109 0.89668 1.52067 0.92027 1.18984 0.92654 0.90697 0.98734 1.30398 1.13154 1.16729 1.10731 1.06154 0.74770 0.76589 0.74376 1.93505 1.70978 1.85070 1.44878 1.93529 1.71182 1.85231 1.45344 1.57807 1.58009 1.56529 1.09276 1.20746 0.92354 0.99112 0.88091 1.24403 0.85961 0.82383 0.78326 1.90788 1.66362 1.30204 1.50926 1.84502 1.42936 1.63480 1.42003 1.20155 0.97532 0.93325 0.84797 1.20347 0.97307 0.95328 0.99340 1.20890 0.99351 0.91069 0.98400 1.21067 0.95698 1.00023 1.01233 1.17812 0.92839 0.82268 0.99204 1.91494 1.79976 1.49812 1.90873 1.21250 1.02064 0.91078 1.03100 1.21452 0.92933 0.99277 0.94565 0.92482 0.94842 0.95032 0.86159 0.85899 0.84362 0.86006 0.72975 0.88173 0.89243 0.85180 0.84874 0.84577 0.82716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 9 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 10 C -0.58 -11.33 5.67 37.16 0.21 -11.12 16 11 S 2.58 44.51 5.38 -107.50 -0.58 43.94 16 12 O -0.95 -17.65 14.79 -57.54 -0.85 -18.50 16 13 O -0.96 -18.86 16.53 -57.54 -0.95 -19.81 16 14 N -0.98 -12.22 2.19 -116.95 -0.26 -12.47 16 15 C 0.13 1.24 6.25 -5.19 -0.03 1.21 16 16 C 0.45 4.81 8.39 36.01 0.30 5.12 16 17 O -0.50 -6.86 15.83 -18.75 -0.30 -7.16 16 18 O -0.52 -4.21 13.42 -39.24 -0.53 -4.74 16 19 C 0.17 1.74 5.40 -5.19 -0.03 1.71 16 20 C -0.12 -1.28 5.46 -104.61 -0.57 -1.85 16 21 C -0.08 -0.67 9.37 -39.59 -0.37 -1.05 16 22 C -0.16 -1.48 10.03 -39.52 -0.40 -1.87 16 23 C 0.10 1.07 7.30 -39.42 -0.29 0.78 16 24 F -0.14 -1.64 17.27 2.25 0.04 -1.60 16 25 C -0.16 -1.75 10.03 -39.52 -0.40 -2.15 16 26 C -0.06 -0.76 9.11 -39.59 -0.36 -1.12 16 27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.12 2.30 7.25 -51.92 -0.38 1.92 16 31 H 0.12 2.23 8.14 -51.92 -0.42 1.81 16 32 H 0.14 1.42 6.81 -51.93 -0.35 1.06 16 33 H 0.12 0.78 7.64 -51.93 -0.40 0.38 16 34 H 0.41 1.87 9.10 45.56 0.41 2.28 16 35 H 0.10 1.05 7.55 -51.93 -0.39 0.66 16 36 H 0.09 0.72 8.05 -51.93 -0.42 0.31 16 37 H 0.13 0.75 7.92 -52.49 -0.42 0.34 16 38 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 40 H 0.16 2.01 6.46 -52.48 -0.34 1.67 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -35.80 363.47 -8.64 -44.44 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -3.93 Total: 2.83 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -2.48 Total: -22.98 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.48 Total: -38.22 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -2.63 Total: -50.20 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 44.51 SS G_CDS: -0.58 Total: 43.94 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.80 -8.64 -44.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548240430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.542 kcal (2) G-P(sol) polarization free energy of solvation -35.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds