Wall clock time and date at job start Wed Apr 1 2020 03:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34770 * 116.99699 * 2 1 4 4 O 1.21535 * 120.00366 * 359.97438 * 3 2 1 5 5 C 1.47233 * 119.99594 * 180.02562 * 3 2 1 6 6 C 1.36501 * 127.20207 * 0.02562 * 5 3 2 7 7 O 1.33630 * 108.38218 * 179.75855 * 6 5 3 8 8 C 1.34218 * 110.92312 * 0.38290 * 7 6 5 9 9 S 1.76205 * 125.42655 * 179.87934 * 8 7 6 10 10 O 1.42093 * 106.40287 * 156.15336 * 9 8 7 11 11 O 1.42102 * 106.39877 * 23.23027 * 9 8 7 12 12 N 1.65603 * 107.21647 * 269.69704 * 9 8 7 13 13 C 1.47018 * 125.65444 * 89.97352 * 12 9 8 14 14 C 1.54317 * 107.27551 * 178.98520 * 13 12 9 15 15 C 1.55155 * 102.94255 * 337.80829 * 14 13 12 16 16 O 1.42904 * 111.00504 * 277.38970 * 15 14 13 17 17 C 1.50698 * 111.00851 * 153.57668 * 15 14 13 18 18 H 1.08005 * 119.99819 * 241.45572 * 17 15 14 19 19 C 1.37875 * 120.00046 * 61.44913 * 17 15 14 20 20 N 1.31511 * 120.00192 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 119.99979 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47297 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47261 * 60.00310 * 21 19 17 24 24 H 1.48500 * 109.47454 * 300.00304 * 21 19 17 25 25 C 1.47425 * 125.64354 * 270.02545 * 12 9 8 26 26 C 1.34150 * 109.14489 * 359.61599 * 8 7 6 27 27 H 1.08999 * 109.47549 * 300.00581 * 1 2 3 28 28 H 1.09001 * 109.46686 * 60.00370 * 1 2 3 29 29 H 1.08998 * 109.47305 * 180.02562 * 1 2 3 30 30 H 1.08000 * 125.80915 * 359.97438 * 6 5 3 31 31 H 1.08998 * 109.88313 * 59.56669 * 13 12 9 32 32 H 1.09001 * 109.87937 * 298.40864 * 13 12 9 33 33 H 1.09001 * 110.72189 * 219.44543 * 14 13 12 34 34 H 1.08997 * 110.72175 * 96.17016 * 14 13 12 35 35 H 0.96701 * 114.00066 * 295.41521 * 16 15 14 36 36 H 0.97001 * 119.99934 * 359.97438 * 20 19 17 37 37 H 1.09002 * 110.36835 * 85.24844 * 25 12 9 38 38 H 1.09005 * 110.37163 * 322.92152 * 25 12 9 39 39 H 1.08006 * 127.02292 * 180.20735 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2201 -0.0005 5 6 3.5341 1.2779 -0.0006 6 6 4.4152 0.2353 -0.0016 7 8 5.6557 0.7320 -0.0072 8 6 5.6348 2.0740 -0.0015 9 16 7.0545 3.1176 -0.0028 10 8 6.6371 4.3621 -0.5471 11 8 8.1175 2.3482 -0.5480 12 7 7.4508 3.4081 1.5786 13 6 8.3631 2.5956 2.3966 14 6 8.4456 3.2593 3.7873 15 6 8.0187 4.7230 3.4998 16 8 9.1198 5.4908 3.0098 17 6 7.4216 5.3625 4.7268 18 1 6.3986 5.7087 4.7117 19 6 8.1811 5.5056 5.8686 20 7 9.4268 5.0844 5.8868 21 14 7.4407 6.2977 7.3896 22 1 8.4556 6.3331 8.4732 23 1 6.2657 5.5075 7.8371 24 1 7.0123 7.6827 7.0679 25 6 6.9464 4.5238 2.3997 26 6 4.3608 2.4941 -0.0004 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 4.1541 -0.8127 -0.0018 31 1 9.3514 2.5725 1.9376 32 1 7.9726 1.5824 2.4918 33 1 9.4649 3.2233 4.1719 34 1 7.7530 2.7851 4.4827 35 1 9.8382 5.6000 3.6479 36 1 9.8112 4.6727 5.0970 37 1 5.9877 4.2621 2.8475 38 1 6.8503 5.4262 1.7958 39 1 4.0132 3.5167 0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592078265.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:11 Heat of formation + Delta-G solvation = -200.653878 kcal Electronic energy + Delta-G solvation = -28524.825480 eV Core-core repulsion = 24140.241090 eV Total energy + Delta-G solvation = -4384.584390 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.085 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.98110 -41.34660 -40.14166 -38.67605 -37.63331 -37.30047 -36.50356 -34.48754 -34.23296 -31.85651 -31.00497 -30.13474 -28.76848 -26.43785 -25.27543 -23.86419 -23.32830 -22.22357 -21.77493 -20.69508 -19.93970 -19.71430 -18.78979 -18.38318 -17.82161 -17.48530 -17.44542 -17.18641 -17.04781 -16.58367 -16.17149 -15.72753 -15.33227 -14.99384 -14.76766 -14.57446 -14.47503 -14.42656 -14.21419 -14.00840 -13.59316 -13.54038 -13.42503 -13.33426 -13.08777 -12.92977 -12.68608 -12.41127 -12.36773 -12.18764 -11.97887 -11.92771 -11.90142 -11.48188 -11.21390 -10.64567 -10.58582 -10.14233 -10.09443 -8.59285 -6.43617 -1.16772 -0.23001 -0.00396 1.25323 1.55326 1.60305 1.64384 1.69704 1.84619 1.87152 2.39127 2.56152 3.01145 3.07377 3.15533 3.42548 3.52568 3.81822 3.88562 3.93517 4.05043 4.24231 4.26596 4.29796 4.43069 4.47691 4.54846 4.62072 4.70413 4.75146 4.99395 5.01496 5.10749 5.15466 5.24306 5.29847 5.32082 5.88455 6.13675 6.48403 6.55319 7.05108 7.35150 8.73468 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012607 B = 0.003355 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.534711 B = 8344.861034 C = 9727.997945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.349 6.349 3 C 0.545 3.455 4 O -0.536 6.536 5 C -0.276 4.276 6 C 0.137 3.863 7 O -0.120 6.120 8 C -0.582 4.582 9 S 2.753 3.247 10 O -0.953 6.953 11 O -0.956 6.956 12 N -1.000 6.000 13 C 0.124 3.876 14 C -0.140 4.140 15 C 0.213 3.787 16 O -0.592 6.592 17 C -0.630 4.630 18 H 0.055 0.945 19 C -0.008 4.008 20 N -0.925 5.925 21 Si 1.113 2.887 22 H -0.285 1.285 23 H -0.270 1.270 24 H -0.279 1.279 25 C 0.138 3.862 26 C -0.036 4.036 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.142 0.858 30 H 0.287 0.713 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.368 0.632 36 H 0.267 0.733 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.212 -15.108 -9.487 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.266 6.266 3 C 0.391 3.609 4 O -0.427 6.427 5 C -0.279 4.279 6 C 0.062 3.938 7 O -0.012 6.012 8 C -0.711 4.711 9 S 2.839 3.161 10 O -0.944 6.944 11 O -0.946 6.946 12 N -0.840 5.840 13 C -0.001 4.001 14 C -0.180 4.180 15 C 0.172 3.828 16 O -0.400 6.400 17 C -0.668 4.668 18 H 0.074 0.926 19 C -0.208 4.208 20 N -0.566 5.566 21 Si 0.936 3.064 22 H -0.210 1.210 23 H -0.196 1.196 24 H -0.204 1.204 25 C 0.013 3.987 26 C -0.057 4.057 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.160 0.840 30 H 0.302 0.698 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.217 0.783 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -12.830 -14.276 -9.345 21.348 hybrid contribution -0.895 -0.236 -0.776 1.208 sum -13.725 -14.512 -10.121 22.392 Atomic orbital electron populations 1.23664 0.73573 1.06315 1.02755 1.86503 1.25687 1.30433 1.83937 1.19872 0.87149 0.81976 0.71919 1.90875 1.67054 1.37231 1.47563 1.20747 0.91458 0.94219 1.21468 1.26310 0.79359 1.01484 0.86624 1.84004 1.30646 1.17618 1.68940 1.35565 1.18798 0.91965 1.24789 1.00395 0.72179 0.72409 0.71119 1.93617 1.83790 1.40564 1.76386 1.93549 1.52398 1.72446 1.76233 1.58392 1.57542 1.37831 1.30225 1.21878 0.92961 0.94173 0.91062 1.23246 1.01795 0.97890 0.95029 1.20122 0.84170 0.87812 0.90700 1.86272 1.32011 1.76197 1.45508 1.22562 1.01245 1.44550 0.98486 0.92629 1.27032 0.94749 0.94959 1.04108 1.71044 1.14230 1.38177 1.33103 0.82948 0.75091 0.76057 0.72349 1.21042 1.19565 1.20450 1.22060 0.97173 0.87599 0.91828 1.23126 0.90079 1.00973 0.91514 0.91956 0.91751 0.84031 0.69833 0.91099 0.89162 0.91405 0.90828 0.78266 0.91953 0.89322 0.91000 0.80265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.57 113.37 1.20 1.51 16 2 O -0.35 -5.55 10.42 -56.81 -0.59 -6.14 16 3 C 0.54 12.32 7.95 70.19 0.56 12.88 16 4 O -0.54 -15.76 16.77 19.72 0.33 -15.43 16 5 C -0.28 -6.01 6.31 -19.01 -0.12 -6.13 16 6 C 0.14 2.08 11.94 67.41 0.80 2.88 16 7 O -0.12 -2.66 10.52 4.65 0.05 -2.61 16 8 C -0.58 -15.68 7.32 66.89 0.49 -15.19 16 9 S 2.75 89.51 6.08 -56.49 -0.34 89.17 16 10 O -0.95 -35.19 17.14 -128.00 -2.19 -37.38 16 11 O -0.96 -34.02 17.60 -127.88 -2.25 -36.27 16 12 N -1.00 -35.16 3.70 -506.43 -1.87 -37.03 16 13 C 0.12 4.19 6.99 86.73 0.61 4.80 16 14 C -0.14 -5.68 5.32 31.78 0.17 -5.51 16 15 C 0.21 9.87 0.83 -10.15 -0.01 9.86 16 16 O -0.59 -29.30 13.17 -148.98 -1.96 -31.26 16 17 C -0.63 -32.11 8.27 25.60 0.21 -31.90 16 18 H 0.06 2.81 7.79 -2.91 -0.02 2.79 16 19 C -0.01 -0.39 5.27 84.65 0.45 0.05 16 20 N -0.93 -49.24 12.99 21.45 0.28 -48.97 16 21 Si 1.11 46.10 29.90 68.60 2.05 48.15 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 24 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 25 C 0.14 5.55 6.28 86.86 0.55 6.09 16 26 C -0.04 -0.94 10.70 23.65 0.25 -0.69 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.29 0.83 8.06 -2.91 -0.02 0.81 16 31 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.07 2.86 6.46 -2.39 -0.02 2.85 16 34 H 0.07 2.99 8.03 -2.39 -0.02 2.97 16 35 H 0.37 18.14 6.64 -74.06 -0.49 17.65 16 36 H 0.27 13.79 3.73 -92.71 -0.35 13.44 16 37 H 0.09 3.26 8.03 -2.39 -0.02 3.24 16 38 H 0.07 2.99 7.78 -2.38 -0.02 2.97 16 39 H 0.18 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -72.25 352.63 -0.31 -72.56 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 1.04 Total: 26.55 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 5.15 Total: -21.34 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -1.59 Total: -86.00 kcal Atomic # 8 Polarization: -122.48 SS G_CDS: -6.62 Total: -129.10 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.05 Total: 48.15 kcal Atomic # 16 Polarization: 89.51 SS G_CDS: -0.34 Total: 89.17 kcal Total: -72.25 -0.31 -72.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592078265.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.094 kcal (2) G-P(sol) polarization free energy of solvation -72.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds