Wall clock time and date at job start Wed Apr 1 2020 03:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86794 * 120.00073 * 2 1 4 4 H 1.48507 * 109.46949 * 275.40661 * 3 2 1 5 5 H 1.48492 * 109.47433 * 35.40706 * 3 2 1 6 6 H 1.48496 * 109.47164 * 155.41212 * 3 2 1 7 7 C 1.39950 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00122 * 341.73322 * 7 2 1 9 9 C 1.41392 * 119.99462 * 161.73123 * 7 2 1 10 10 C 1.40726 * 120.24864 * 330.21970 * 9 7 2 11 11 C 1.37602 * 119.74610 * 180.02562 * 10 9 7 12 12 C 1.38655 * 120.24756 * 359.73212 * 11 10 9 13 13 C 1.38607 * 120.50122 * 0.54295 * 12 11 10 14 14 S 1.76196 * 119.87765 * 179.72928 * 13 12 11 15 15 O 1.42096 * 106.40746 * 156.19274 * 14 13 12 16 16 O 1.42103 * 106.40366 * 23.26502 * 14 13 12 17 17 N 1.65602 * 107.21865 * 269.72882 * 14 13 12 18 18 C 1.39947 * 119.99908 * 64.99654 * 17 14 13 19 19 C 1.38874 * 120.19169 * 45.00259 * 18 17 14 20 20 C 1.37891 * 120.27103 * 180.15480 * 19 18 17 21 21 C 1.39279 * 120.33910 * 0.02562 * 20 19 18 22 22 C 1.38955 * 118.98472 * 359.61322 * 21 20 19 23 23 C 1.37649 * 120.84541 * 0.57122 * 22 21 20 24 24 C 1.51658 * 106.99844 * 180.57673 * 22 21 20 25 25 C 1.54700 * 101.95195 * 15.72124 * 24 22 21 26 26 O 1.36266 * 129.77747 * 179.58754 * 21 20 19 27 27 C 1.37646 * 120.24843 * 359.45759 * 13 12 11 28 28 H 0.96997 * 119.99650 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.12684 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.87217 * 180.02562 * 11 10 9 31 31 H 1.07996 * 119.74714 * 180.30087 * 12 11 10 32 32 H 0.96998 * 120.00506 * 245.00189 * 17 14 13 33 33 H 1.07994 * 119.86976 * 0.12985 * 19 18 17 34 34 H 1.07999 * 119.83217 * 180.02562 * 20 19 18 35 35 H 1.08003 * 120.01644 * 179.61959 * 23 22 21 36 36 H 1.09004 * 110.93944 * 257.55030 * 24 22 21 37 37 H 1.08992 * 110.94332 * 133.90091 * 24 22 21 38 38 H 1.08998 * 110.74251 * 92.92107 * 25 24 22 39 39 H 1.09000 * 110.75033 * 216.08643 * 25 24 22 40 40 H 1.08003 * 120.12801 * 180.25219 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1123 -1.3939 5 1 1.5016 2.6169 0.8111 6 1 3.5923 1.4098 0.5825 7 6 2.0080 -1.2120 0.0005 8 1 1.5088 -2.1236 0.2941 9 6 3.3684 -1.2430 -0.3833 10 6 3.8636 -0.3117 -1.3149 11 6 5.1893 -0.3515 -1.6815 12 6 6.0375 -1.3011 -1.1325 13 6 5.5595 -2.2269 -0.2184 14 16 6.6503 -3.4308 0.4636 15 8 6.0812 -3.8323 1.7021 16 8 7.9616 -2.8956 0.3479 17 7 6.5976 -4.7570 -0.5269 18 6 7.0647 -4.6663 -1.8430 19 6 8.2685 -4.0295 -2.1146 20 6 8.7287 -3.9365 -3.4111 21 6 7.9908 -4.4795 -4.4602 22 6 6.7911 -5.1214 -4.1781 23 6 6.3267 -5.2131 -2.8856 24 6 6.2307 -5.6141 -5.4984 25 6 7.4637 -5.5135 -6.4273 26 8 8.2549 -4.4920 -5.7969 27 6 4.2371 -2.2057 0.1629 28 1 -0.4849 0.8400 -0.0004 29 1 3.2056 0.4316 -1.7405 30 1 5.5715 0.3625 -2.3960 31 1 7.0776 -1.3220 -1.4224 32 1 6.2430 -5.5966 -0.1949 33 1 8.8466 -3.6050 -1.3071 34 1 9.6661 -3.4401 -3.6142 35 1 5.3894 -5.7097 -2.6822 36 1 5.4268 -4.9655 -5.8466 37 1 5.8883 -6.6455 -5.4157 38 1 8.0049 -6.4592 -6.4543 39 1 7.1670 -5.2112 -7.4316 40 1 3.8676 -2.9254 0.8784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619461644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:07 Heat of formation + Delta-G solvation = -75.857661 kcal Electronic energy + Delta-G solvation = -27510.505785 eV Core-core repulsion = 23574.474979 eV Total energy + Delta-G solvation = -3936.030806 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.087 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.00797 -39.72092 -39.28858 -38.29275 -37.05943 -35.65570 -35.33496 -33.59813 -32.56639 -31.92743 -30.27051 -29.41780 -27.26139 -24.48661 -24.14954 -23.21900 -22.80448 -22.70943 -20.77022 -19.75796 -18.88622 -18.59283 -18.21190 -18.05228 -17.44135 -17.03376 -16.87769 -16.68908 -16.36535 -15.61332 -15.12536 -14.93882 -14.80404 -14.70244 -14.49070 -14.10476 -14.05323 -13.93147 -13.73381 -13.59394 -13.42116 -13.23799 -13.12528 -12.91935 -12.80615 -12.58574 -12.57136 -12.41814 -12.05930 -11.82536 -11.67241 -11.59320 -11.18286 -10.96747 -10.04759 -9.89846 -9.71097 -8.98449 -8.84724 -6.60994 -0.77260 0.13713 0.26496 0.34141 0.62845 1.19918 1.34629 1.41753 1.86746 2.04125 2.32751 2.39291 2.61443 2.64383 3.26840 3.31181 3.49230 3.72657 3.85284 4.03800 4.14732 4.21773 4.30223 4.31138 4.40610 4.47152 4.58674 4.70771 4.72741 4.80444 4.87304 4.93433 5.04387 5.08753 5.16336 5.29959 5.36139 5.40536 5.40742 5.58768 5.60504 5.73805 5.95990 5.98101 6.22065 6.23923 6.55528 6.68168 8.09710 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012307 B = 0.003801 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.492593 B = 7364.984868 C = 8461.641787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.051 3.949 3 Si 0.953 3.047 4 H -0.249 1.249 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.483 4.483 8 H 0.064 0.936 9 C 0.056 3.944 10 C -0.201 4.201 11 C -0.097 4.097 12 C -0.136 4.136 13 C -0.632 4.632 14 S 2.713 3.287 15 O -0.982 6.982 16 O -0.965 6.965 17 N -1.041 6.041 18 C 0.112 3.888 19 C -0.124 4.124 20 C -0.121 4.121 21 C 0.083 3.917 22 C -0.165 4.165 23 C -0.083 4.083 24 C -0.109 4.109 25 C 0.048 3.952 26 O -0.322 6.322 27 C -0.122 4.122 28 H 0.296 0.704 29 H 0.109 0.891 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.437 0.563 33 H 0.161 0.839 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.128 0.872 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.697 -9.941 -11.527 20.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.164 4.164 3 Si 0.776 3.224 4 H -0.174 1.174 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.512 4.512 8 H 0.082 0.918 9 C 0.052 3.948 10 C -0.221 4.221 11 C -0.116 4.116 12 C -0.157 4.157 13 C -0.720 4.720 14 S 2.807 3.193 15 O -0.973 6.973 16 O -0.955 6.955 17 N -0.794 5.794 18 C 0.016 3.984 19 C -0.145 4.145 20 C -0.140 4.140 21 C 0.037 3.963 22 C -0.167 4.167 23 C -0.105 4.105 24 C -0.146 4.146 25 C -0.027 4.027 26 O -0.237 6.237 27 C -0.143 4.143 28 H 0.107 0.893 29 H 0.127 0.873 30 H 0.158 0.842 31 H 0.157 0.843 32 H 0.276 0.724 33 H 0.178 0.822 34 H 0.167 0.833 35 H 0.163 0.837 36 H 0.113 0.887 37 H 0.132 0.868 38 H 0.111 0.889 39 H 0.146 0.854 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 14.099 -9.508 -10.861 20.178 hybrid contribution -1.329 0.466 0.040 1.409 sum 12.770 -9.042 -10.822 19.025 Atomic orbital electron populations 1.69698 1.09039 1.31702 1.36084 1.26758 0.95342 1.03946 0.90397 0.85664 0.79713 0.76950 0.80069 1.17388 1.19913 1.17981 1.19481 0.94148 0.96081 1.41499 0.91829 1.17919 0.92894 0.92731 0.91224 1.21496 0.96929 1.02722 1.00919 1.21143 0.92909 0.98378 0.99175 1.20571 0.99686 0.96663 0.98753 1.30308 1.09800 1.18075 1.13858 1.01259 0.73463 0.72569 0.72050 1.93543 1.79873 1.82384 1.41480 1.93472 1.36651 1.79247 1.86146 1.52928 1.77117 1.27505 1.21893 1.17245 0.94100 1.03777 0.83253 1.21666 0.94466 1.00247 0.98142 1.20289 1.01162 1.03507 0.89027 1.19820 0.94214 0.97655 0.84582 1.20930 0.96133 1.03961 0.95655 1.20405 0.99445 1.00773 0.89886 1.21920 0.98895 1.04297 0.89478 1.24123 0.89519 0.91113 0.97900 1.86822 1.65494 1.55287 1.16071 1.20904 0.91504 1.01890 1.00027 0.89296 0.87328 0.84184 0.84319 0.72388 0.82213 0.83338 0.83733 0.88669 0.86758 0.88927 0.85363 0.86488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.70 13.93 21.83 0.30 -44.40 16 2 C 0.05 2.68 5.40 85.26 0.46 3.14 16 3 Si 0.95 41.19 24.52 68.60 1.68 42.87 16 4 H -0.25 -9.90 6.71 99.48 0.67 -9.23 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.26 -11.47 6.86 99.48 0.68 -10.79 16 7 C -0.48 -26.46 9.57 23.46 0.22 -26.24 16 8 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 9 C 0.06 2.79 5.10 -21.29 -0.11 2.68 16 10 C -0.20 -9.14 7.18 22.73 0.16 -8.98 16 11 C -0.10 -3.82 10.02 22.22 0.22 -3.60 16 12 C -0.14 -5.20 9.53 22.46 0.21 -4.98 16 13 C -0.63 -25.20 5.90 22.22 0.13 -25.07 16 14 S 2.71 90.85 5.66 -56.49 -0.32 90.53 16 15 O -0.98 -37.88 17.27 -128.00 -2.21 -40.09 16 16 O -0.97 -33.23 14.20 -128.00 -1.82 -35.05 16 17 N -1.04 -26.84 5.79 -51.20 -0.30 -27.14 16 18 C 0.11 2.89 6.23 38.17 0.24 3.13 16 19 C -0.12 -3.22 9.16 22.34 0.20 -3.02 16 20 C -0.12 -2.87 10.06 22.44 0.23 -2.65 16 21 C 0.08 1.98 7.04 22.69 0.16 2.14 16 22 C -0.17 -3.63 6.27 -19.53 -0.12 -3.75 16 23 C -0.08 -1.95 9.96 22.30 0.22 -1.73 16 24 C -0.11 -1.60 7.11 30.73 0.22 -1.38 16 25 C 0.05 0.62 8.01 72.56 0.58 1.20 16 26 O -0.32 -7.01 11.11 -96.59 -1.07 -8.08 16 27 C -0.12 -5.63 9.26 22.73 0.21 -5.42 16 28 H 0.30 14.11 8.30 -92.71 -0.77 13.34 16 29 H 0.11 4.82 4.73 -2.91 -0.01 4.81 16 30 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 31 H 0.14 4.57 7.59 -2.91 -0.02 4.55 16 32 H 0.44 8.67 8.95 -96.74 -0.87 7.81 16 33 H 0.16 4.28 5.60 -2.91 -0.02 4.26 16 34 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 35 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 36 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.13 1.04 8.14 -2.39 -0.02 1.03 16 40 H 0.12 5.28 7.60 -2.91 -0.02 5.26 16 Total: -1.00 -67.67 346.52 -0.31 -67.98 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.18 Total: 27.88 kcal Atomic # 6 Polarization: -77.76 SS G_CDS: 3.25 Total: -74.51 kcal Atomic # 7 Polarization: -71.54 SS G_CDS: 0.01 Total: -71.53 kcal Atomic # 8 Polarization: -78.12 SS G_CDS: -5.10 Total: -83.22 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 1.68 Total: 42.87 kcal Atomic # 16 Polarization: 90.85 SS G_CDS: -0.32 Total: 90.53 kcal Total: -67.67 -0.31 -67.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619461644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.877 kcal (2) G-P(sol) polarization free energy of solvation -67.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds