Wall clock time and date at job start Wed Apr 1 2020 03:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00294 * 2 1 4 4 H 1.48502 * 109.46697 * 269.99485 * 3 2 1 5 5 H 1.48500 * 109.47220 * 29.99275 * 3 2 1 6 6 H 1.48501 * 109.47148 * 149.99644 * 3 2 1 7 7 C 1.37875 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99812 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99978 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47038 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.46974 * 179.97438 * 10 9 7 12 12 O 1.42103 * 110.54412 * 68.37831 * 11 10 9 13 13 O 1.42099 * 110.54685 * 291.62160 * 11 10 9 14 14 N 1.65606 * 104.44935 * 179.97438 * 11 10 9 15 15 C 1.46496 * 119.99882 * 63.73945 * 14 11 10 16 16 H 1.09004 * 109.47260 * 336.81135 * 15 14 11 17 17 C 1.52998 * 109.47306 * 96.80952 * 15 14 11 18 18 C 1.50696 * 109.47396 * 186.75247 * 17 15 14 19 19 O 1.20825 * 119.99816 * 6.16773 * 18 17 15 20 20 O 1.34234 * 120.00577 * 186.16856 * 18 17 15 21 21 C 1.50702 * 109.47311 * 216.81081 * 15 14 11 22 22 C 1.38248 * 119.97513 * 139.99952 * 21 15 14 23 23 C 1.38192 * 120.02408 * 180.02562 * 22 21 15 24 24 C 1.38460 * 119.97768 * 0.02562 * 23 22 21 25 25 F 1.35098 * 120.02889 * 179.97438 * 24 23 22 26 26 C 1.38467 * 119.94473 * 0.24857 * 24 23 22 27 27 C 1.38200 * 119.97454 * 359.47687 * 26 24 23 28 28 H 0.97001 * 119.99408 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47690 * 59.99481 * 9 7 2 30 30 H 1.09002 * 109.46826 * 299.99238 * 9 7 2 31 31 H 1.09001 * 109.47317 * 59.99762 * 10 9 7 32 32 H 1.08993 * 109.47257 * 299.99965 * 10 9 7 33 33 H 0.96995 * 119.99847 * 243.73632 * 14 11 10 34 34 H 1.08999 * 109.47314 * 306.75191 * 17 15 14 35 35 H 1.09000 * 109.47459 * 66.75254 * 17 15 14 36 36 H 0.96696 * 117.00401 * 180.02562 * 20 18 17 37 37 H 1.07998 * 119.98595 * 0.02562 * 22 21 15 38 38 H 1.07999 * 120.01051 * 180.02562 * 23 22 21 39 39 H 1.08002 * 120.01194 * 179.74213 * 26 24 23 40 40 H 1.07997 * 119.98677 * 180.29096 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3380 -5.2330 0.0013 12 8 0.6636 -5.4200 -1.2354 13 8 0.6645 -5.4194 1.2386 14 7 2.5202 -6.3928 0.0005 15 6 3.4370 -6.5049 1.1376 16 1 3.4811 -5.5516 1.6643 17 6 2.9363 -7.5916 2.0912 18 6 3.7824 -7.5945 3.3382 19 8 4.6194 -6.7387 3.5023 20 8 3.6064 -8.5479 4.2666 21 6 4.8124 -6.8681 0.6401 22 6 5.9290 -6.2837 1.2084 23 6 7.1907 -6.6156 0.7526 24 6 7.3363 -7.5332 -0.2739 25 9 8.5692 -7.8580 -0.7207 26 6 6.2169 -8.1135 -0.8462 27 6 4.9564 -7.7844 -0.3849 28 1 -0.4849 0.8401 -0.0004 29 1 0.6245 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8904 31 1 2.8718 -3.6044 0.8905 32 1 2.8718 -3.6044 -0.8894 33 1 2.6055 -6.9978 -0.7528 34 1 1.8983 -7.3916 2.3570 35 1 3.0055 -8.5636 1.6029 36 1 4.1724 -8.5081 5.0496 37 1 5.8152 -5.5677 2.0088 38 1 8.0629 -6.1593 1.1970 39 1 6.3290 -8.8263 -1.6498 40 1 4.0834 -8.2404 -0.8279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738428251.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:58 Heat of formation + Delta-G solvation = -192.582195 kcal Electronic energy + Delta-G solvation = -28171.517771 eV Core-core repulsion = 23799.656185 eV Total energy + Delta-G solvation = -4371.861586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.11123 -40.77525 -39.41600 -36.83771 -36.49539 -35.91740 -35.53051 -33.93181 -31.50294 -31.20593 -31.05423 -29.91590 -25.65638 -24.92799 -23.36360 -22.30568 -21.71989 -20.80032 -19.18352 -18.37004 -18.13947 -17.69611 -17.14320 -16.75948 -16.23000 -16.19595 -15.90386 -15.79720 -15.48466 -15.29501 -14.76374 -14.54688 -14.22958 -13.98584 -13.75035 -13.48492 -13.25697 -13.14763 -12.85679 -12.54026 -12.25684 -11.99611 -11.79294 -11.72763 -11.71286 -11.62820 -11.38033 -11.20069 -11.09026 -10.99102 -10.72799 -10.48340 -10.41603 -10.01304 -9.66393 -9.32686 -9.14495 -8.84590 -8.52031 -6.14427 -4.19942 0.62144 0.84749 1.00926 2.01000 2.64627 3.08238 3.25524 3.31984 3.34215 3.35007 3.98571 4.09002 4.24060 4.36069 4.39891 4.47648 4.62075 4.66795 4.77255 5.01433 5.02108 5.14421 5.18451 5.21120 5.42046 5.53103 5.57371 5.68556 5.70843 5.80806 5.86980 6.00933 6.25722 6.31549 6.43723 6.63118 6.85811 7.26269 7.31941 7.66513 7.78816 8.14827 8.83460 9.45146 10.96590 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010079 B = 0.003405 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.313180 B = 8220.393989 C = 9153.125525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.588 4.588 11 S 2.588 3.412 12 O -0.962 6.962 13 O -0.963 6.963 14 N -1.119 6.119 15 C 0.210 3.790 16 H 0.110 0.890 17 C -0.134 4.134 18 C 0.486 3.514 19 O -0.510 6.510 20 O -0.517 6.517 21 C -0.109 4.109 22 C -0.053 4.053 23 C -0.156 4.156 24 C 0.099 3.901 25 F -0.142 7.142 26 C -0.158 4.158 27 C -0.080 4.080 28 H 0.265 0.735 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.414 0.586 34 H 0.131 0.869 35 H 0.112 0.888 36 H 0.410 0.590 37 H 0.147 0.853 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.753 -19.566 3.579 23.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.722 4.722 11 S 2.686 3.314 12 O -0.952 6.952 13 O -0.953 6.953 14 N -0.875 5.875 15 C 0.101 3.899 16 H 0.128 0.872 17 C -0.173 4.173 18 C 0.328 3.672 19 O -0.398 6.398 20 O -0.329 6.329 21 C -0.111 4.111 22 C -0.072 4.072 23 C -0.175 4.175 24 C 0.080 3.920 25 F -0.121 7.121 26 C -0.176 4.176 27 C -0.098 4.098 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.249 0.751 34 H 0.149 0.851 35 H 0.130 0.870 36 H 0.269 0.731 37 H 0.165 0.835 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.632 -19.337 3.406 22.328 hybrid contribution 1.754 0.894 0.083 1.971 sum 12.386 -18.443 3.488 22.488 Atomic orbital electron populations 1.69954 1.06112 1.27224 1.49553 1.25058 0.94966 0.99535 0.94857 0.86474 0.79739 0.82848 0.78259 1.20457 1.21001 1.19732 1.20993 0.93092 0.89697 1.52194 0.91990 1.18973 0.92641 0.90519 0.98945 1.30443 1.13739 1.17666 1.10346 1.05803 0.74603 0.76691 0.74327 1.93570 1.71317 1.85231 1.45074 1.93548 1.71228 1.84964 1.45562 1.56065 1.51601 1.51964 1.27866 1.19262 0.85498 0.99414 0.85707 0.87222 1.21979 1.01640 1.02734 0.90935 1.23219 0.81660 0.77976 0.84390 1.90701 1.34060 1.37256 1.77783 1.84528 1.63200 1.52259 1.32897 1.19937 0.94713 0.98606 0.97838 1.21137 0.90361 0.97912 0.97744 1.21193 0.99224 0.99271 0.97801 1.17804 0.79799 0.98065 0.96312 1.91498 1.40617 1.91526 1.88410 1.21071 0.91545 1.02739 1.02277 1.20787 0.96814 0.96520 0.95686 0.92516 0.94795 0.94745 0.86212 0.85806 0.75133 0.85083 0.87024 0.73087 0.83501 0.84607 0.84654 0.84887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.52 -14.12 9.11 -34.44 -0.31 -14.43 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 10 C -0.59 -10.66 5.87 37.16 0.22 -10.45 16 11 S 2.59 41.97 5.37 -107.50 -0.58 41.39 16 12 O -0.96 -18.49 18.08 -57.54 -1.04 -19.53 16 13 O -0.96 -17.82 17.26 -57.54 -0.99 -18.81 16 14 N -1.12 -12.37 5.30 -5.88 -0.03 -12.41 16 15 C 0.21 2.20 2.08 -69.08 -0.14 2.05 16 16 H 0.11 1.22 6.59 -51.93 -0.34 0.88 16 17 C -0.13 -1.23 5.58 -27.89 -0.16 -1.39 16 18 C 0.49 4.74 8.02 36.00 0.29 5.02 16 19 O -0.51 -5.95 13.60 -18.75 -0.25 -6.21 16 20 O -0.52 -3.94 13.42 -39.27 -0.53 -4.47 16 21 C -0.11 -1.08 4.51 -104.62 -0.47 -1.55 16 22 C -0.05 -0.55 8.15 -39.59 -0.32 -0.88 16 23 C -0.16 -1.57 10.03 -39.52 -0.40 -1.97 16 24 C 0.10 1.02 7.30 -39.42 -0.29 0.74 16 25 F -0.14 -1.56 17.27 2.25 0.04 -1.52 16 26 C -0.16 -1.40 10.03 -39.51 -0.40 -1.80 16 27 C -0.08 -0.68 9.15 -39.59 -0.36 -1.04 16 28 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.12 1.93 7.39 -51.92 -0.38 1.55 16 32 H 0.12 2.04 8.14 -51.93 -0.42 1.61 16 33 H 0.41 3.58 7.07 -34.47 -0.24 3.34 16 34 H 0.13 1.31 7.55 -51.93 -0.39 0.91 16 35 H 0.11 0.76 8.12 -51.93 -0.42 0.34 16 36 H 0.41 1.47 9.10 45.56 0.41 1.88 16 37 H 0.15 1.55 6.85 -52.49 -0.36 1.19 16 38 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.13 0.81 6.81 -52.49 -0.36 0.45 16 LS Contribution 360.79 15.07 5.44 5.44 Total: -1.00 -36.03 360.79 -8.55 -44.58 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -3.74 Total: 4.51 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -2.58 Total: -23.59 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.71 Total: -37.79 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -2.82 Total: -49.01 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 41.97 SS G_CDS: -0.58 Total: 41.39 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.03 -8.55 -44.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738428251.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.002 kcal (2) G-P(sol) polarization free energy of solvation -36.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds