Wall clock time and date at job start Wed Apr 1 2020 03:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00294 * 2 1 4 4 H 1.48502 * 109.46697 * 269.99485 * 3 2 1 5 5 H 1.48500 * 109.47220 * 29.99275 * 3 2 1 6 6 H 1.48501 * 109.47148 * 149.99644 * 3 2 1 7 7 C 1.37875 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99812 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99978 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47038 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.46974 * 179.97438 * 10 9 7 12 12 O 1.42103 * 110.54412 * 68.37831 * 11 10 9 13 13 O 1.42099 * 110.54685 * 291.62160 * 11 10 9 14 14 N 1.65606 * 104.44935 * 179.97438 * 11 10 9 15 15 C 1.46496 * 119.99882 * 63.73945 * 14 11 10 16 16 H 1.09004 * 109.47260 * 336.81135 * 15 14 11 17 17 C 1.52998 * 109.47306 * 96.80952 * 15 14 11 18 18 C 1.50696 * 109.47396 * 186.75247 * 17 15 14 19 19 O 1.20825 * 119.99816 * 6.16773 * 18 17 15 20 20 O 1.34234 * 120.00577 * 186.16856 * 18 17 15 21 21 C 1.50702 * 109.47311 * 216.81081 * 15 14 11 22 22 C 1.38248 * 119.97513 * 139.99952 * 21 15 14 23 23 C 1.38192 * 120.02408 * 180.02562 * 22 21 15 24 24 C 1.38460 * 119.97768 * 0.02562 * 23 22 21 25 25 F 1.35098 * 120.02889 * 179.97438 * 24 23 22 26 26 C 1.38467 * 119.94473 * 0.24857 * 24 23 22 27 27 C 1.38200 * 119.97454 * 359.47687 * 26 24 23 28 28 H 0.97001 * 119.99408 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47690 * 59.99481 * 9 7 2 30 30 H 1.09002 * 109.46826 * 299.99238 * 9 7 2 31 31 H 1.09001 * 109.47317 * 59.99762 * 10 9 7 32 32 H 1.08993 * 109.47257 * 299.99965 * 10 9 7 33 33 H 0.96995 * 119.99847 * 243.73632 * 14 11 10 34 34 H 1.08999 * 109.47314 * 306.75191 * 17 15 14 35 35 H 1.09000 * 109.47459 * 66.75254 * 17 15 14 36 36 H 0.96696 * 117.00401 * 180.02562 * 20 18 17 37 37 H 1.07998 * 119.98595 * 0.02562 * 22 21 15 38 38 H 1.07999 * 120.01051 * 180.02562 * 23 22 21 39 39 H 1.08002 * 120.01194 * 179.74213 * 26 24 23 40 40 H 1.07997 * 119.98677 * 180.29096 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3380 -5.2330 0.0013 12 8 0.6636 -5.4200 -1.2354 13 8 0.6645 -5.4194 1.2386 14 7 2.5202 -6.3928 0.0005 15 6 3.4370 -6.5049 1.1376 16 1 3.4811 -5.5516 1.6643 17 6 2.9363 -7.5916 2.0912 18 6 3.7824 -7.5945 3.3382 19 8 4.6194 -6.7387 3.5023 20 8 3.6064 -8.5479 4.2666 21 6 4.8124 -6.8681 0.6401 22 6 5.9290 -6.2837 1.2084 23 6 7.1907 -6.6156 0.7526 24 6 7.3363 -7.5332 -0.2739 25 9 8.5692 -7.8580 -0.7207 26 6 6.2169 -8.1135 -0.8462 27 6 4.9564 -7.7844 -0.3849 28 1 -0.4849 0.8401 -0.0004 29 1 0.6245 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8904 31 1 2.8718 -3.6044 0.8905 32 1 2.8718 -3.6044 -0.8894 33 1 2.6055 -6.9978 -0.7528 34 1 1.8983 -7.3916 2.3570 35 1 3.0055 -8.5636 1.6029 36 1 4.1724 -8.5081 5.0496 37 1 5.8152 -5.5677 2.0088 38 1 8.0629 -6.1593 1.1970 39 1 6.3290 -8.8263 -1.6498 40 1 4.0834 -8.2404 -0.8279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738428251.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:57 Heat of formation + Delta-G solvation = -219.427088 kcal Electronic energy + Delta-G solvation = -28172.681853 eV Core-core repulsion = 23799.656185 eV Total energy + Delta-G solvation = -4373.025668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.90193 -41.51777 -40.14332 -38.18987 -37.33018 -37.01693 -36.70251 -35.88087 -33.11641 -32.26467 -31.88896 -30.64326 -27.58926 -25.73259 -24.14183 -23.53415 -23.02595 -21.58187 -20.39615 -19.25338 -19.09830 -18.81147 -18.38037 -17.94439 -17.20410 -17.06476 -16.90674 -16.89783 -16.58443 -16.51821 -16.27441 -15.71209 -15.13760 -15.02474 -14.70040 -14.47709 -14.43455 -14.01935 -13.89454 -13.72972 -13.62595 -13.22611 -13.17577 -13.09277 -12.93360 -12.90470 -12.78069 -12.44668 -12.29854 -12.19438 -12.09242 -11.88846 -11.73919 -11.50590 -11.25882 -10.64377 -10.62215 -10.03227 -9.60383 -8.25185 -6.38291 -0.72247 0.08347 0.30355 1.28347 1.41426 1.42506 1.53595 1.67074 2.26369 2.38492 2.58405 2.77197 3.08636 3.23885 3.28306 3.44358 3.70753 3.74560 3.95151 3.98491 4.01707 4.14711 4.28963 4.35503 4.45661 4.50304 4.71025 4.77452 4.84033 4.98646 5.02968 5.16841 5.27569 5.29690 5.30939 5.53133 5.70012 5.70315 5.91182 6.04656 6.08683 6.75232 7.05314 7.31756 8.86932 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010079 B = 0.003405 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.313180 B = 8220.393989 C = 9153.125525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.538 4.538 8 H 0.073 0.927 9 C 0.021 3.979 10 C -0.595 4.595 11 S 2.623 3.377 12 O -0.990 6.990 13 O -0.985 6.985 14 N -1.096 6.096 15 C 0.205 3.795 16 H 0.101 0.899 17 C -0.136 4.136 18 C 0.487 3.513 19 O -0.534 6.534 20 O -0.514 6.514 21 C -0.111 4.111 22 C -0.064 4.064 23 C -0.163 4.163 24 C 0.083 3.917 25 F -0.149 7.149 26 C -0.154 4.154 27 C -0.076 4.076 28 H 0.267 0.733 29 H 0.008 0.992 30 H 0.010 0.990 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.430 0.570 34 H 0.125 0.875 35 H 0.141 0.859 36 H 0.428 0.572 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.157 0.843 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.199 -20.895 3.322 24.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.577 4.577 8 H 0.091 0.909 9 C -0.018 4.018 10 C -0.726 4.726 11 S 2.719 3.281 12 O -0.980 6.980 13 O -0.975 6.975 14 N -0.856 5.856 15 C 0.097 3.903 16 H 0.119 0.881 17 C -0.175 4.175 18 C 0.330 3.670 19 O -0.424 6.424 20 O -0.327 6.327 21 C -0.113 4.113 22 C -0.082 4.082 23 C -0.182 4.182 24 C 0.064 3.936 25 F -0.128 7.128 26 C -0.173 4.173 27 C -0.094 4.094 28 H 0.076 0.924 29 H 0.027 0.973 30 H 0.028 0.972 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.268 0.732 34 H 0.143 0.857 35 H 0.159 0.841 36 H 0.289 0.711 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.175 0.825 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 12.094 -20.674 3.154 24.159 hybrid contribution 1.338 1.187 0.216 1.802 sum 13.432 -19.487 3.370 23.906 Atomic orbital electron populations 1.70091 1.07930 1.28252 1.50950 1.26051 0.95819 1.03652 0.94462 0.85377 0.78673 0.78007 0.78599 1.19659 1.20812 1.18372 1.21512 0.93907 0.90926 1.51381 0.90869 1.18816 0.93560 0.92891 0.96562 1.30393 1.12951 1.17032 1.12271 1.04478 0.74399 0.76148 0.73057 1.93528 1.72567 1.85564 1.46372 1.93521 1.72220 1.85152 1.46580 1.55453 1.50793 1.50464 1.28932 1.19359 0.85688 0.99849 0.85429 0.88100 1.21982 1.00973 1.03659 0.90854 1.23265 0.81210 0.77811 0.84721 1.90704 1.35179 1.38214 1.78344 1.84484 1.63538 1.51318 1.33408 1.19890 0.93860 0.99154 0.98415 1.21131 0.90806 0.98292 0.98003 1.21297 0.99437 0.99480 0.97996 1.18037 0.80029 0.98679 0.96823 1.91478 1.41175 1.91635 1.88521 1.21345 0.91082 1.02509 1.02346 1.21077 0.97728 0.95755 0.94865 0.92413 0.97339 0.97185 0.84331 0.83997 0.73152 0.85684 0.84107 0.71063 0.84218 0.83971 0.82547 0.82053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.10 13.29 21.45 0.28 -55.82 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.97 43.14 29.54 68.60 2.03 45.16 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.54 -29.48 9.11 25.60 0.23 -29.25 16 8 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 9 C 0.02 1.05 4.98 29.85 0.15 1.20 16 10 C -0.59 -21.37 5.87 71.98 0.42 -20.95 16 11 S 2.62 83.12 5.37 -56.49 -0.30 82.82 16 12 O -0.99 -37.46 18.08 -127.65 -2.31 -39.76 16 13 O -0.99 -36.10 17.26 -127.65 -2.20 -38.30 16 14 N -1.10 -21.72 5.30 -172.52 -0.91 -22.63 16 15 C 0.20 3.88 2.08 44.25 0.09 3.98 16 16 H 0.10 2.13 6.59 -2.39 -0.02 2.11 16 17 C -0.14 -2.20 5.58 29.85 0.17 -2.03 16 18 C 0.49 8.68 8.02 71.23 0.57 9.26 16 19 O -0.53 -11.97 13.60 21.97 0.30 -11.67 16 20 O -0.51 -6.78 13.42 -51.46 -0.69 -7.47 16 21 C -0.11 -1.95 4.51 -19.86 -0.09 -2.04 16 22 C -0.06 -1.26 8.15 22.26 0.18 -1.08 16 23 C -0.16 -3.12 10.03 22.31 0.22 -2.90 16 24 C 0.08 1.58 7.30 22.38 0.16 1.75 16 25 F -0.15 -3.11 17.27 44.97 0.78 -2.33 16 26 C -0.15 -2.31 10.03 22.32 0.22 -2.08 16 27 C -0.08 -1.04 9.15 22.26 0.20 -0.84 16 28 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.14 4.38 7.39 -2.39 -0.02 4.36 16 32 H 0.14 4.51 8.14 -2.39 -0.02 4.49 16 33 H 0.43 6.02 7.07 -96.75 -0.68 5.34 16 34 H 0.13 2.26 7.55 -2.39 -0.02 2.24 16 35 H 0.14 1.41 8.12 -2.39 -0.02 1.39 16 36 H 0.43 2.24 9.10 -74.06 -0.67 1.57 16 37 H 0.14 2.92 6.85 -2.91 -0.02 2.90 16 38 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 39 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 40 H 0.16 1.23 6.81 -2.91 -0.02 1.21 16 Total: -1.00 -78.64 360.79 -0.28 -78.92 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -0.25 Total: 15.69 kcal Atomic # 6 Polarization: -47.61 SS G_CDS: 3.00 Total: -44.61 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -0.63 Total: -78.45 kcal Atomic # 8 Polarization: -92.30 SS G_CDS: -4.90 Total: -97.21 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.78 Total: -2.33 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: 83.12 SS G_CDS: -0.30 Total: 82.82 kcal Total: -78.64 -0.28 -78.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738428251.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.508 kcal (2) G-P(sol) polarization free energy of solvation -78.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds