Wall clock time and date at job start Wed Apr 1 2020 03:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 119.99777 * 2 1 4 4 H 1.48504 * 109.47273 * 275.99514 * 3 2 1 5 5 H 1.48504 * 109.47099 * 35.99223 * 3 2 1 6 6 H 1.48505 * 109.47356 * 155.99222 * 3 2 1 7 7 C 1.38952 * 120.00519 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99634 * 338.60365 * 7 2 1 9 9 N 1.37096 * 120.00122 * 158.60260 * 7 2 1 10 10 C 1.46508 * 120.00099 * 322.20296 * 9 7 2 11 11 C 1.50702 * 109.47110 * 263.24226 * 10 9 7 12 12 O 1.20826 * 119.99996 * 359.97438 * 11 10 9 13 13 O 1.34230 * 119.99988 * 180.02562 * 11 10 9 14 14 C 1.34771 * 119.99905 * 142.20983 * 9 7 2 15 15 O 1.21292 * 120.00364 * 359.97438 * 14 9 7 16 16 C 1.50707 * 119.99786 * 180.02562 * 14 9 7 17 17 S 1.81404 * 109.46830 * 179.97438 * 16 14 9 18 18 C 1.76202 * 102.99857 * 179.97438 * 17 16 14 19 19 C 1.40099 * 119.67036 * 0.23543 * 18 17 16 20 20 C 1.35875 * 120.91188 * 180.28093 * 19 18 17 21 21 C 1.40625 * 119.91592 * 359.73650 * 20 19 18 22 22 C 1.40522 * 121.12315 * 180.02562 * 21 20 19 23 23 C 1.36120 * 119.69303 * 180.02562 * 22 21 20 24 24 C 1.39364 * 121.00192 * 0.02562 * 23 22 21 25 25 C 1.36086 * 120.96671 * 359.97438 * 24 23 22 26 26 C 1.40598 * 119.66306 * 0.02562 * 25 24 23 27 27 C 1.37821 * 119.67170 * 179.97438 * 18 17 16 28 28 H 0.96996 * 120.00011 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46796 * 23.23735 * 10 9 7 30 30 H 1.08995 * 109.46900 * 143.23936 * 10 9 7 31 31 H 0.96700 * 116.99900 * 180.02562 * 13 11 10 32 32 H 1.08994 * 109.47790 * 59.99155 * 16 14 9 33 33 H 1.09001 * 109.46775 * 299.99171 * 16 14 9 34 34 H 1.07994 * 119.54400 * 0.02562 * 19 18 17 35 35 H 1.07994 * 120.04385 * 179.76557 * 20 19 18 36 36 H 1.08001 * 120.15473 * 0.04933 * 22 21 20 37 37 H 1.08001 * 119.49268 * 180.02562 * 23 22 21 38 38 H 1.07997 * 119.51357 * 179.97438 * 24 23 22 39 39 H 1.08003 * 120.16858 * 180.02562 * 25 24 23 40 40 H 1.07999 * 120.25472 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.3689 2.1196 -1.3924 5 1 1.5145 2.6128 0.8228 6 1 3.6032 1.4071 0.5696 7 6 2.0090 -1.2033 -0.0005 8 1 1.5249 -2.1065 0.3403 9 7 3.3091 -1.2439 -0.4337 10 6 3.7281 -0.4218 -1.5717 11 6 3.7009 -1.2527 -2.8287 12 8 3.3663 -2.4126 -2.7790 13 8 4.0493 -0.7044 -4.0033 14 6 4.2016 -2.0403 0.1872 15 8 3.8549 -2.7207 1.1295 16 6 5.6309 -2.0845 -0.2886 17 16 6.5760 -3.2396 0.7425 18 6 8.1931 -3.1595 0.0474 19 6 8.4378 -2.3159 -1.0441 20 6 9.6737 -2.2388 -1.6034 21 6 10.7287 -3.0088 -1.0821 22 6 12.0168 -2.9483 -1.6404 23 6 13.0166 -3.7067 -1.1130 24 6 12.7834 -4.5457 -0.0249 25 6 11.5492 -4.6306 0.5421 26 6 10.4915 -3.8622 0.0246 27 6 9.2060 -3.9232 0.5863 28 1 -0.4850 0.8400 -0.0004 29 1 3.0477 0.4228 -1.6797 30 1 4.7398 -0.0540 -1.4011 31 1 4.0158 -1.2766 -4.7821 32 1 6.0696 -1.0894 -0.2147 33 1 5.6583 -2.4173 -1.3262 34 1 7.6320 -1.7219 -1.4491 35 1 9.8457 -1.5867 -2.4468 36 1 12.2128 -2.3028 -2.4838 37 1 14.0055 -3.6574 -1.5443 38 1 13.5941 -5.1372 0.3741 39 1 11.3830 -5.2848 1.3852 40 1 9.0110 -4.5684 1.4301 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739079420.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:16 Heat of formation + Delta-G solvation = -56.956798 kcal Electronic energy + Delta-G solvation = -26585.760253 eV Core-core repulsion = 22650.549051 eV Total energy + Delta-G solvation = -3935.211203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.087 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.37189 -40.16164 -38.64452 -36.59097 -35.89336 -35.00338 -32.90288 -32.39137 -30.84139 -29.68863 -29.24066 -28.21699 -24.89452 -23.72184 -23.13611 -22.09712 -21.90365 -19.45695 -18.13813 -17.92223 -17.49601 -17.37553 -16.86806 -16.63196 -16.18148 -15.49814 -15.33535 -15.10415 -14.80842 -14.80670 -14.45518 -13.85767 -13.79337 -13.52633 -13.44865 -13.10573 -12.90624 -12.75229 -12.65828 -12.25581 -12.19945 -12.00468 -11.70784 -11.28923 -11.22203 -11.08649 -11.05841 -10.78791 -10.27344 -10.24461 -10.11224 -10.02377 -9.34034 -9.22993 -8.92437 -8.30690 -8.11359 -7.16631 -6.57257 -4.18802 0.33813 0.78340 1.48098 1.88028 2.50204 2.51043 2.73390 2.83404 2.95812 3.07480 3.12041 3.56539 3.92370 3.92663 4.08457 4.40241 4.62669 4.69350 4.72424 4.86543 4.98035 5.01789 5.06327 5.09688 5.15944 5.19137 5.23810 5.36192 5.52490 5.55919 5.66482 5.73959 5.79250 5.95535 6.01837 6.15041 6.30820 6.36702 6.62860 6.72343 6.78567 7.24481 7.99709 8.16608 8.24152 8.69678 9.04989 9.39573 10.53954 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.018283 B = 0.002782 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.098686 B =10061.725090 C =10647.233982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.061 3.939 3 Si 0.860 3.140 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.258 1.258 7 C -0.316 4.316 8 H 0.112 0.888 9 N -0.443 5.443 10 C 0.095 3.905 11 C 0.454 3.546 12 O -0.490 6.490 13 O -0.524 6.524 14 C 0.497 3.503 15 O -0.527 6.527 16 C -0.151 4.151 17 S -0.020 6.020 18 C -0.093 4.093 19 C -0.128 4.128 20 C -0.086 4.086 21 C -0.064 4.064 22 C -0.100 4.100 23 C -0.126 4.126 24 C -0.115 4.115 25 C -0.107 4.107 26 C -0.030 4.030 27 C -0.095 4.095 28 H 0.278 0.722 29 H 0.118 0.882 30 H 0.104 0.896 31 H 0.403 0.597 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.002 -1.094 -6.184 23.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.146 4.146 3 Si 0.686 3.314 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.443 4.443 8 H 0.129 0.871 9 N -0.166 5.166 10 C -0.031 4.031 11 C 0.293 3.707 12 O -0.375 6.375 13 O -0.336 6.336 14 C 0.284 3.716 15 O -0.406 6.406 16 C -0.302 4.302 17 S 0.226 5.774 18 C -0.207 4.207 19 C -0.150 4.150 20 C -0.106 4.106 21 C -0.066 4.066 22 C -0.118 4.118 23 C -0.145 4.145 24 C -0.133 4.133 25 C -0.126 4.126 26 C -0.032 4.032 27 C -0.122 4.122 28 H 0.088 0.912 29 H 0.136 0.864 30 H 0.121 0.879 31 H 0.261 0.739 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 21.905 -2.029 -4.360 22.426 hybrid contribution 0.687 1.475 -1.949 2.539 sum 22.592 -0.554 -6.309 23.463 Atomic orbital electron populations 1.69734 1.06143 1.28255 1.44422 1.25397 0.95268 0.98189 0.95760 0.87192 0.81728 0.84094 0.78399 1.19647 1.20296 1.18145 1.19067 0.84014 0.97120 1.44069 0.87054 1.43239 1.10025 1.40124 1.23210 1.21678 1.03334 0.94868 0.83251 1.24584 0.73277 0.87658 0.85161 1.90742 1.42092 1.18330 1.86380 1.84569 1.81467 1.48934 1.18663 1.19180 0.84271 0.84116 0.84040 1.90634 1.78815 1.42706 1.28444 1.24025 0.99335 1.03018 1.03843 1.86251 0.96709 1.53920 1.40512 1.22250 0.99496 0.99857 0.99080 1.20950 0.98092 0.99559 0.96425 1.20916 0.92083 0.98300 0.99254 1.18080 0.94209 0.97927 0.96346 1.21017 0.91992 0.99234 0.99566 1.20814 0.99213 0.97343 0.97098 1.20834 0.97091 0.98943 0.96470 1.21039 0.92479 0.99049 1.00032 1.17964 0.93560 0.96527 0.95193 1.20773 0.90716 1.00134 1.00597 0.91168 0.86420 0.87857 0.73898 0.87473 0.87843 0.85849 0.85300 0.85708 0.86153 0.86066 0.85475 0.84892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.68 13.96 55.50 0.77 -22.91 16 2 C 0.06 1.61 5.28 -17.47 -0.09 1.52 16 3 Si 0.86 18.57 24.97 -169.99 -4.24 14.32 16 4 H -0.27 -5.30 6.71 56.52 0.38 -4.92 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.32 -8.68 9.36 -14.93 -0.14 -8.82 16 8 H 0.11 3.50 7.92 -52.49 -0.42 3.09 16 9 N -0.44 -10.36 1.74 -116.09 -0.20 -10.57 16 10 C 0.09 1.78 4.33 -5.19 -0.02 1.76 16 11 C 0.45 8.08 7.63 36.01 0.27 8.36 16 12 O -0.49 -10.53 17.00 -18.75 -0.32 -10.85 16 13 O -0.52 -6.94 13.42 -39.26 -0.53 -7.46 16 14 C 0.50 11.35 7.39 -10.98 -0.08 11.27 16 15 O -0.53 -14.02 15.74 5.55 0.09 -13.93 16 16 C -0.15 -2.58 3.42 36.01 0.12 -2.46 16 17 S -0.02 -0.34 21.04 -107.50 -2.26 -2.61 16 18 C -0.09 -1.31 6.10 -39.04 -0.24 -1.55 16 19 C -0.13 -1.60 9.26 -39.73 -0.37 -1.97 16 20 C -0.09 -0.94 9.74 -39.53 -0.39 -1.32 16 21 C -0.06 -0.72 5.74 -106.79 -0.61 -1.33 16 22 C -0.10 -0.92 9.76 -39.48 -0.39 -1.30 16 23 C -0.13 -1.04 9.95 -39.92 -0.40 -1.44 16 24 C -0.12 -0.97 9.95 -39.94 -0.40 -1.37 16 25 C -0.11 -1.04 9.77 -39.47 -0.39 -1.43 16 26 C -0.03 -0.36 5.74 -106.84 -0.61 -0.97 16 27 C -0.10 -1.22 9.53 -38.91 -0.37 -1.59 16 28 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.12 2.28 3.61 -51.93 -0.19 2.10 16 30 H 0.10 1.49 6.73 -51.93 -0.35 1.14 16 31 H 0.40 3.52 9.10 45.56 0.41 3.93 16 32 H 0.11 1.52 6.99 -51.93 -0.36 1.16 16 33 H 0.10 1.64 7.03 -51.92 -0.36 1.28 16 34 H 0.12 1.40 5.79 -52.49 -0.30 1.09 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 39 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 40 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 355.57 15.07 5.36 5.36 Total: -1.00 -34.28 355.57 -8.69 -42.97 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -3.26 Total: 8.32 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -4.09 Total: -2.65 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.57 Total: -33.47 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.76 Total: -32.25 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -4.24 Total: 14.32 kcal Atomic # 16 Polarization: -0.34 SS G_CDS: -2.26 Total: -2.61 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.28 -8.69 -42.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739079420.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.989 kcal (2) G-P(sol) polarization free energy of solvation -34.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds