Wall clock time and date at job start Wed Apr 1 2020 03:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 119.99777 * 2 1 4 4 H 1.48504 * 109.47273 * 275.99514 * 3 2 1 5 5 H 1.48504 * 109.47099 * 35.99223 * 3 2 1 6 6 H 1.48505 * 109.47356 * 155.99222 * 3 2 1 7 7 C 1.38952 * 120.00519 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99634 * 338.60365 * 7 2 1 9 9 N 1.37096 * 120.00122 * 158.60260 * 7 2 1 10 10 C 1.46508 * 120.00099 * 322.20296 * 9 7 2 11 11 C 1.50702 * 109.47110 * 263.24226 * 10 9 7 12 12 O 1.20826 * 119.99996 * 359.97438 * 11 10 9 13 13 O 1.34230 * 119.99988 * 180.02562 * 11 10 9 14 14 C 1.34771 * 119.99905 * 142.20983 * 9 7 2 15 15 O 1.21292 * 120.00364 * 359.97438 * 14 9 7 16 16 C 1.50707 * 119.99786 * 180.02562 * 14 9 7 17 17 S 1.81404 * 109.46830 * 179.97438 * 16 14 9 18 18 C 1.76202 * 102.99857 * 179.97438 * 17 16 14 19 19 C 1.40099 * 119.67036 * 0.23543 * 18 17 16 20 20 C 1.35875 * 120.91188 * 180.28093 * 19 18 17 21 21 C 1.40625 * 119.91592 * 359.73650 * 20 19 18 22 22 C 1.40522 * 121.12315 * 180.02562 * 21 20 19 23 23 C 1.36120 * 119.69303 * 180.02562 * 22 21 20 24 24 C 1.39364 * 121.00192 * 0.02562 * 23 22 21 25 25 C 1.36086 * 120.96671 * 359.97438 * 24 23 22 26 26 C 1.40598 * 119.66306 * 0.02562 * 25 24 23 27 27 C 1.37821 * 119.67170 * 179.97438 * 18 17 16 28 28 H 0.96996 * 120.00011 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46796 * 23.23735 * 10 9 7 30 30 H 1.08995 * 109.46900 * 143.23936 * 10 9 7 31 31 H 0.96700 * 116.99900 * 180.02562 * 13 11 10 32 32 H 1.08994 * 109.47790 * 59.99155 * 16 14 9 33 33 H 1.09001 * 109.46775 * 299.99171 * 16 14 9 34 34 H 1.07994 * 119.54400 * 0.02562 * 19 18 17 35 35 H 1.07994 * 120.04385 * 179.76557 * 20 19 18 36 36 H 1.08001 * 120.15473 * 0.04933 * 22 21 20 37 37 H 1.08001 * 119.49268 * 180.02562 * 23 22 21 38 38 H 1.07997 * 119.51357 * 179.97438 * 24 23 22 39 39 H 1.08003 * 120.16858 * 180.02562 * 25 24 23 40 40 H 1.07999 * 120.25472 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.3689 2.1196 -1.3924 5 1 1.5145 2.6128 0.8228 6 1 3.6032 1.4071 0.5696 7 6 2.0090 -1.2033 -0.0005 8 1 1.5249 -2.1065 0.3403 9 7 3.3091 -1.2439 -0.4337 10 6 3.7281 -0.4218 -1.5717 11 6 3.7009 -1.2527 -2.8287 12 8 3.3663 -2.4126 -2.7790 13 8 4.0493 -0.7044 -4.0033 14 6 4.2016 -2.0403 0.1872 15 8 3.8549 -2.7207 1.1295 16 6 5.6309 -2.0845 -0.2886 17 16 6.5760 -3.2396 0.7425 18 6 8.1931 -3.1595 0.0474 19 6 8.4378 -2.3159 -1.0441 20 6 9.6737 -2.2388 -1.6034 21 6 10.7287 -3.0088 -1.0821 22 6 12.0168 -2.9483 -1.6404 23 6 13.0166 -3.7067 -1.1130 24 6 12.7834 -4.5457 -0.0249 25 6 11.5492 -4.6306 0.5421 26 6 10.4915 -3.8622 0.0246 27 6 9.2060 -3.9232 0.5863 28 1 -0.4850 0.8400 -0.0004 29 1 3.0477 0.4228 -1.6797 30 1 4.7398 -0.0540 -1.4011 31 1 4.0158 -1.2766 -4.7821 32 1 6.0696 -1.0894 -0.2147 33 1 5.6583 -2.4173 -1.3262 34 1 7.6320 -1.7219 -1.4491 35 1 9.8457 -1.5867 -2.4468 36 1 12.2128 -2.3028 -2.4838 37 1 14.0055 -3.6574 -1.5443 38 1 13.5941 -5.1372 0.3741 39 1 11.3830 -5.2848 1.3852 40 1 9.0110 -4.5684 1.4301 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739079420.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:15 Heat of formation + Delta-G solvation = -79.357138 kcal Electronic energy + Delta-G solvation = -26586.731605 eV Core-core repulsion = 22650.549051 eV Total energy + Delta-G solvation = -3936.182554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.087 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.65624 -41.14247 -40.29369 -37.38068 -37.29224 -36.71975 -34.35145 -33.67713 -31.91767 -30.90090 -30.05965 -29.78476 -26.73686 -24.60535 -23.92711 -23.31903 -22.85921 -21.16202 -19.30070 -19.27664 -19.04555 -18.57301 -18.07083 -17.68107 -17.59142 -17.00387 -16.66631 -16.32426 -16.27525 -15.62165 -15.49757 -15.32290 -14.84981 -14.63094 -14.51297 -14.30343 -14.26757 -14.15150 -13.82764 -13.72221 -13.56200 -13.03400 -12.88566 -12.61993 -12.56683 -12.37931 -12.03417 -11.99185 -11.81620 -11.75372 -11.20162 -11.15591 -11.04623 -10.73498 -10.10173 -10.00926 -9.11378 -8.57603 -8.29196 -6.27493 -0.44112 -0.02656 0.23913 1.09832 1.09994 1.16581 1.30489 1.34019 1.45227 1.53007 1.96070 1.99593 2.14148 2.46414 2.88770 3.15048 3.43828 3.65261 3.74286 3.85734 3.88507 4.00487 4.04693 4.10258 4.13515 4.25645 4.35190 4.38177 4.44833 4.51372 4.80803 4.97668 5.06611 5.16752 5.28426 5.32594 5.35733 5.57013 5.62349 5.63117 5.84054 5.94267 6.08682 6.29645 6.74444 6.94499 7.07342 7.55324 8.59281 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.018283 B = 0.002782 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.098686 B =10061.725090 C =10647.233982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.011 3.989 3 Si 0.934 3.066 4 H -0.225 1.225 5 H -0.281 1.281 6 H -0.239 1.239 7 C -0.338 4.338 8 H 0.040 0.960 9 N -0.453 5.453 10 C 0.085 3.915 11 C 0.467 3.533 12 O -0.538 6.538 13 O -0.500 6.500 14 C 0.487 3.513 15 O -0.583 6.583 16 C -0.129 4.129 17 S -0.081 6.081 18 C -0.101 4.101 19 C -0.146 4.146 20 C -0.077 4.077 21 C -0.079 4.079 22 C -0.106 4.106 23 C -0.124 4.124 24 C -0.111 4.111 25 C -0.125 4.125 26 C -0.051 4.051 27 C -0.103 4.103 28 H 0.284 0.716 29 H 0.118 0.882 30 H 0.158 0.842 31 H 0.428 0.572 32 H 0.145 0.855 33 H 0.119 0.881 34 H 0.136 0.864 35 H 0.161 0.839 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.138 0.862 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.905 1.618 -8.926 29.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.192 4.192 3 Si 0.754 3.246 4 H -0.149 1.149 5 H -0.208 1.208 6 H -0.162 1.162 7 C -0.466 4.466 8 H 0.058 0.942 9 N -0.175 5.175 10 C -0.040 4.040 11 C 0.308 3.692 12 O -0.427 6.427 13 O -0.314 6.314 14 C 0.276 3.724 15 O -0.465 6.465 16 C -0.280 4.280 17 S 0.163 5.837 18 C -0.214 4.214 19 C -0.168 4.168 20 C -0.097 4.097 21 C -0.081 4.081 22 C -0.124 4.124 23 C -0.142 4.142 24 C -0.129 4.129 25 C -0.143 4.143 26 C -0.053 4.053 27 C -0.129 4.129 28 H 0.094 0.906 29 H 0.135 0.865 30 H 0.176 0.824 31 H 0.290 0.710 32 H 0.163 0.837 33 H 0.137 0.863 34 H 0.153 0.847 35 H 0.179 0.821 36 H 0.169 0.831 37 H 0.168 0.832 38 H 0.166 0.834 39 H 0.156 0.844 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 26.853 0.694 -7.179 27.805 hybrid contribution -0.660 0.477 -1.170 1.426 sum 26.194 1.171 -8.349 27.517 Atomic orbital electron populations 1.69865 1.08417 1.29911 1.45759 1.26306 0.96042 1.02497 0.94389 0.86043 0.80437 0.77249 0.80862 1.14887 1.20757 1.16159 1.18545 0.86165 0.95569 1.46327 0.94163 1.43211 1.08509 1.40842 1.24960 1.21898 1.06080 0.93872 0.82152 1.24178 0.72263 0.86567 0.86167 1.90757 1.44406 1.20375 1.87172 1.84475 1.80146 1.48580 1.18159 1.20092 0.86422 0.82660 0.83220 1.90596 1.80343 1.44663 1.30866 1.23787 0.95138 1.05127 1.03922 1.86443 0.99855 1.55248 1.42107 1.22075 0.97157 1.01779 1.00423 1.21106 0.99325 0.99977 0.96361 1.21270 0.91127 0.97866 0.99424 1.18436 0.95549 0.97838 0.96284 1.21352 0.91072 0.99723 1.00232 1.21256 1.00422 0.96095 0.96424 1.21235 0.97118 0.98521 0.96033 1.21265 0.92747 0.99436 1.00865 1.18197 0.93453 0.97607 0.96001 1.20924 0.91301 0.99977 1.00717 0.90570 0.86482 0.82424 0.71049 0.83674 0.86314 0.84666 0.82116 0.83059 0.83181 0.83446 0.84444 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.64 13.96 21.66 0.30 -52.34 16 2 C 0.01 0.59 5.28 84.93 0.45 1.04 16 3 Si 0.93 37.19 24.97 68.60 1.71 38.90 16 4 H -0.22 -7.37 6.71 99.48 0.67 -6.70 16 5 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.24 -8.74 7.11 99.48 0.71 -8.04 16 7 C -0.34 -19.76 9.36 84.04 0.79 -18.97 16 8 H 0.04 2.84 7.92 -2.91 -0.02 2.81 16 9 N -0.45 -21.49 1.74 -639.59 -1.11 -22.61 16 10 C 0.08 2.94 4.33 85.63 0.37 3.31 16 11 C 0.47 15.56 7.63 71.24 0.54 16.10 16 12 O -0.54 -23.10 17.00 21.96 0.37 -22.72 16 13 O -0.50 -11.09 13.42 -51.41 -0.69 -11.78 16 14 C 0.49 22.90 7.39 87.66 0.65 23.55 16 15 O -0.58 -33.22 15.74 -3.07 -0.05 -33.27 16 16 C -0.13 -4.31 3.42 71.24 0.24 -4.07 16 17 S -0.08 -2.82 21.04 -56.49 -1.19 -4.01 16 18 C -0.10 -2.81 6.10 22.62 0.14 -2.67 16 19 C -0.15 -3.32 9.26 22.17 0.21 -3.11 16 20 C -0.08 -1.44 9.74 22.30 0.22 -1.22 16 21 C -0.08 -1.58 5.74 -21.27 -0.12 -1.70 16 22 C -0.11 -1.51 9.76 22.33 0.22 -1.29 16 23 C -0.12 -1.52 9.95 22.05 0.22 -1.30 16 24 C -0.11 -1.50 9.95 22.04 0.22 -1.28 16 25 C -0.12 -2.21 9.77 22.34 0.22 -1.99 16 26 C -0.05 -1.13 5.74 -21.30 -0.12 -1.26 16 27 C -0.10 -2.64 9.53 22.70 0.22 -2.43 16 28 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.12 4.11 3.61 -2.39 -0.01 4.10 16 30 H 0.16 3.69 6.73 -2.39 -0.02 3.67 16 31 H 0.43 5.69 9.10 -74.06 -0.67 5.01 16 32 H 0.15 3.65 6.99 -2.39 -0.02 3.64 16 33 H 0.12 3.59 7.03 -2.39 -0.02 3.57 16 34 H 0.14 2.61 5.79 -2.91 -0.02 2.59 16 35 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 36 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 37 H 0.15 0.95 8.06 -2.91 -0.02 0.92 16 38 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 39 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -84.78 355.57 4.19 -80.58 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.40 Total: 24.53 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 4.45 Total: 2.72 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -0.81 Total: -74.94 kcal Atomic # 8 Polarization: -67.41 SS G_CDS: -0.37 Total: -67.77 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 1.71 Total: 38.90 kcal Atomic # 16 Polarization: -2.82 SS G_CDS: -1.19 Total: -4.01 kcal Total: -84.78 4.19 -80.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739079420.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.226 kcal (2) G-P(sol) polarization free energy of solvation -84.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds