Wall clock time and date at job start Wed Apr 1 2020 03:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 119.99812 * 2 1 4 4 H 1.48499 * 109.46946 * 239.99892 * 3 2 1 5 5 H 1.48500 * 109.46965 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46796 * 120.00088 * 3 2 1 7 7 C 1.37873 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00026 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99944 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47345 * 179.97438 * 9 7 2 11 11 O 1.45190 * 109.47399 * 180.02562 * 10 9 7 12 12 C 1.34228 * 117.00389 * 180.02562 * 11 10 9 13 13 O 1.20827 * 119.99871 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00337 * 179.97438 * 12 11 10 15 15 N 1.46498 * 109.47093 * 179.97438 * 14 12 11 16 16 S 1.65600 * 119.99957 * 165.00357 * 15 14 12 17 17 O 1.42100 * 106.40399 * 311.45954 * 16 15 14 18 18 O 1.42096 * 106.40587 * 178.54090 * 16 15 14 19 19 C 1.76203 * 107.22123 * 64.99695 * 16 15 14 20 20 C 1.35447 * 126.06869 * 270.02801 * 19 16 15 21 21 N 1.35536 * 108.87207 * 179.74310 * 20 19 16 22 22 H 0.96996 * 125.68408 * 180.26391 * 21 20 19 23 23 C 1.37653 * 108.64214 * 0.37759 * 21 20 19 24 24 C 1.46676 * 126.23292 * 179.88680 * 23 21 20 25 25 N 1.34777 * 120.00250 * 359.69435 * 24 23 21 26 26 O 1.21694 * 120.00368 * 179.68867 * 24 23 21 27 27 C 1.37867 * 107.53300 * 359.62931 * 23 21 20 28 28 H 0.97002 * 120.00398 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47149 * 59.99963 * 9 7 2 30 30 H 1.08997 * 109.47002 * 300.00241 * 9 7 2 31 31 H 1.08996 * 109.47272 * 59.99844 * 10 9 7 32 32 H 1.09001 * 109.46908 * 300.00307 * 10 9 7 33 33 H 1.09004 * 109.46996 * 60.00274 * 14 12 11 34 34 H 1.08997 * 109.47434 * 300.00008 * 14 12 11 35 35 H 0.96995 * 120.00199 * 344.99715 * 15 14 12 36 36 H 1.07997 * 125.56818 * 0.02562 * 20 19 16 37 37 H 0.97001 * 120.00485 * 180.02562 * 25 24 23 38 38 H 0.97005 * 119.99790 * 359.71987 * 25 24 23 39 39 H 1.08007 * 126.45914 * 180.26710 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 8 1.5195 -4.9195 -0.0024 12 6 2.2505 -6.0452 -0.0030 13 8 3.4571 -5.9820 -0.0035 14 6 1.5664 -7.3880 -0.0031 15 7 2.5754 -8.4501 -0.0045 16 16 2.1417 -10.0047 0.3663 17 8 1.3748 -9.9334 1.5604 18 8 3.3198 -10.7898 0.2450 19 6 1.0444 -10.5556 -0.8975 20 6 -0.3042 -10.4293 -0.8935 21 7 -0.7982 -10.9665 -2.0356 22 1 -1.7350 -11.0032 -2.2846 23 6 0.2505 -11.4537 -2.7823 24 6 0.1516 -12.1163 -4.0871 25 7 -1.0544 -12.3004 -4.6598 26 8 1.1586 -12.4997 -4.6528 27 6 1.4113 -11.2003 -2.0829 28 1 -0.4851 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 2.8727 -3.6047 0.8876 32 1 2.8713 -3.6038 -0.8923 33 1 0.9433 -7.4782 -0.8929 34 1 0.9440 -7.4787 0.8871 35 1 3.4975 -8.2428 -0.2226 36 1 -0.8899 -9.9710 -0.1104 37 1 -1.1199 -12.7389 -5.5225 38 1 -1.8575 -11.9983 -4.2071 39 1 2.4151 -11.4516 -2.3926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748473833.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:22 Heat of formation + Delta-G solvation = -194.951244 kcal Electronic energy + Delta-G solvation = -26735.981712 eV Core-core repulsion = 22383.937358 eV Total energy + Delta-G solvation = -4352.044354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.51263 -41.48328 -40.00679 -38.28139 -37.93060 -36.90834 -35.81176 -35.42868 -34.96908 -32.46375 -32.36094 -30.58261 -28.86749 -26.73732 -24.55160 -23.19363 -23.15998 -22.10042 -21.41916 -20.45483 -20.09278 -19.18597 -18.55869 -18.15009 -17.95131 -17.73043 -17.54606 -17.08329 -16.87818 -16.60586 -16.31832 -16.28123 -15.54697 -15.38878 -15.02026 -14.90832 -14.65605 -14.36015 -14.27417 -14.08899 -13.73949 -13.24280 -13.19107 -13.11047 -13.07535 -12.97871 -12.58287 -12.56456 -12.36491 -11.91815 -11.56399 -11.52348 -11.45638 -11.36359 -10.89491 -10.75974 -10.63993 -10.58363 -9.64145 -8.25427 -6.37724 -0.59374 0.25451 0.85981 1.14315 1.42460 1.45473 1.52618 1.63986 1.87686 2.12002 2.23209 2.41714 2.44876 2.84561 3.09340 3.31958 3.55152 3.86918 4.04358 4.10309 4.22192 4.24691 4.30750 4.33568 4.43367 4.55843 4.73502 4.75594 5.16459 5.28121 5.39507 5.51270 5.54278 5.73009 5.76815 5.87461 6.09277 6.18025 6.37421 6.68351 6.76281 7.11540 7.31821 8.86639 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.014690 B = 0.002061 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.578208 B =13580.446771 C =14629.119589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.551 4.551 8 H 0.063 0.937 9 C 0.030 3.970 10 C 0.090 3.910 11 O -0.357 6.357 12 C 0.452 3.548 13 O -0.538 6.538 14 C 0.128 3.872 15 N -1.114 6.114 16 S 2.752 3.248 17 O -0.974 6.974 18 O -0.991 6.991 19 C -0.773 4.773 20 C 0.177 3.823 21 N -0.502 5.502 22 H 0.445 0.555 23 C -0.072 4.072 24 C 0.592 3.408 25 N -0.829 5.829 26 O -0.579 6.579 27 C -0.038 4.038 28 H 0.268 0.732 29 H 0.010 0.990 30 H 0.010 0.990 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.426 0.574 36 H 0.238 0.762 37 H 0.418 0.582 38 H 0.415 0.585 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.429 -25.790 -5.318 27.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.589 4.589 8 H 0.081 0.919 9 C -0.007 4.007 10 C 0.017 3.983 11 O -0.273 6.273 12 C 0.295 3.705 13 O -0.428 6.428 14 C 0.002 3.998 15 N -0.876 5.876 16 S 2.843 3.157 17 O -0.965 6.965 18 O -0.981 6.981 19 C -0.868 4.868 20 C 0.031 3.969 21 N -0.099 5.099 22 H 0.289 0.711 23 C -0.184 4.184 24 C 0.378 3.622 25 N -0.394 5.394 26 O -0.459 6.459 27 C -0.064 4.064 28 H 0.077 0.923 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.264 0.736 36 H 0.254 0.746 37 H 0.251 0.749 38 H 0.246 0.754 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.596 -26.344 -4.936 28.147 hybrid contribution -0.015 1.095 -1.053 1.519 sum -8.611 -25.250 -5.989 27.342 Atomic orbital electron populations 1.70064 1.07651 1.28282 1.50386 1.25896 0.95824 1.03194 0.94191 0.85442 0.78250 0.77795 0.79218 1.19191 1.20527 1.19237 1.21357 0.93676 0.91408 1.52447 0.91872 1.18980 0.94356 0.90363 0.96984 1.23185 0.95075 0.78976 1.01111 1.86478 1.42248 1.15583 1.82997 1.24211 0.86572 0.87965 0.71712 1.90635 1.17115 1.88137 1.46899 1.20972 0.90219 0.79627 1.09026 1.55412 1.19221 1.23949 1.89057 0.99813 0.72374 0.70686 0.72830 1.93563 1.72838 1.86233 1.43816 1.93556 1.48880 1.68129 1.87562 1.30735 1.09961 1.26629 1.19514 1.22647 0.92239 0.92738 0.89313 1.42210 1.09868 1.42654 1.15152 0.71136 1.20346 0.88821 1.12838 0.96427 1.17089 0.84167 0.77652 0.83262 1.43498 1.07366 1.62973 1.25537 1.90915 1.37603 1.52814 1.64521 1.21024 0.98400 0.95553 0.91457 0.92346 0.97154 0.97198 0.92202 0.92092 0.83455 0.83261 0.73619 0.74590 0.74949 0.75351 0.83470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.69 13.29 21.44 0.28 -53.40 16 2 C 0.01 0.45 5.46 84.65 0.46 0.91 16 3 Si 0.97 42.64 29.54 68.60 2.03 44.66 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.55 -30.27 9.11 25.60 0.23 -30.04 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.55 5.35 29.85 0.16 1.71 16 10 C 0.09 3.76 5.40 71.98 0.39 4.15 16 11 O -0.36 -12.42 10.22 -51.40 -0.53 -12.95 16 12 C 0.45 13.09 8.03 71.24 0.57 13.66 16 13 O -0.54 -18.85 15.48 21.96 0.34 -18.51 16 14 C 0.13 2.15 6.81 85.63 0.58 2.73 16 15 N -1.11 -20.56 5.93 -190.79 -1.13 -21.70 16 16 S 2.75 51.42 5.88 -56.49 -0.33 51.08 16 17 O -0.97 -20.73 17.32 -128.00 -2.22 -22.95 16 18 O -0.99 -26.57 17.87 -128.00 -2.29 -28.86 16 19 C -0.77 -10.82 6.15 22.01 0.14 -10.69 16 20 C 0.18 1.05 11.64 83.48 0.97 2.02 16 21 N -0.50 -1.88 5.99 -183.63 -1.10 -2.98 16 22 H 0.45 -2.40 8.19 -92.71 -0.76 -3.16 16 23 C -0.07 -0.95 7.06 40.35 0.28 -0.66 16 24 C 0.59 8.93 8.06 86.45 0.70 9.62 16 25 N -0.83 -3.55 8.87 -176.39 -1.56 -5.11 16 26 O -0.58 -14.85 17.72 -4.33 -0.08 -14.93 16 27 C -0.04 -0.68 10.44 22.57 0.24 -0.45 16 28 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 29 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 2.51 8.13 -2.39 -0.02 2.49 16 32 H 0.06 2.53 8.13 -2.39 -0.02 2.51 16 33 H 0.15 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.15 1.78 7.75 -2.39 -0.02 1.76 16 35 H 0.43 8.83 7.71 -96.75 -0.75 8.09 16 36 H 0.24 -0.57 8.06 -2.91 -0.02 -0.60 16 37 H 0.42 1.18 8.93 -92.71 -0.83 0.35 16 38 H 0.42 -1.52 7.96 -92.70 -0.74 -2.26 16 39 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -89.83 366.33 -3.77 -93.59 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -1.91 Total: -0.92 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 4.72 Total: -7.03 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -3.51 Total: -83.19 kcal Atomic # 8 Polarization: -93.44 SS G_CDS: -4.77 Total: -98.20 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 51.42 SS G_CDS: -0.33 Total: 51.08 kcal Total: -89.83 -3.77 -93.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748473833.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.358 kcal (2) G-P(sol) polarization free energy of solvation -89.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds