Wall clock time and date at job start Wed Apr 1 2020 04:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.46849 * 2 1 4 4 O 1.42904 * 109.46836 * 120.00130 * 2 1 3 5 5 C 1.35945 * 116.99895 * 275.03265 * 4 2 1 6 6 C 1.38710 * 120.02750 * 5.43948 * 5 4 2 7 7 C 1.38157 * 119.96745 * 179.97438 * 6 5 4 8 8 C 1.38458 * 120.02774 * 359.97438 * 7 6 5 9 9 F 1.35095 * 119.96797 * 179.97438 * 8 7 6 10 10 C 1.38450 * 120.06328 * 0.25511 * 8 7 6 11 11 C 1.38160 * 120.02897 * 359.49144 * 10 8 7 12 12 C 1.50695 * 109.46912 * 239.99855 * 2 1 3 13 13 O 1.21288 * 119.99914 * 244.99761 * 12 2 1 14 14 N 1.34776 * 120.00284 * 64.99976 * 12 2 1 15 15 S 1.65603 * 120.00346 * 179.97438 * 14 12 2 16 16 O 1.42093 * 104.27648 * 181.07700 * 15 14 12 17 17 O 1.42099 * 104.27732 * 308.93116 * 15 14 12 18 18 C 1.81397 * 104.44675 * 65.00182 * 15 14 12 19 19 C 1.53005 * 109.46959 * 179.97438 * 18 15 14 20 20 C 1.50694 * 109.47045 * 179.97438 * 19 18 15 21 21 H 1.08004 * 120.00283 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99945 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99785 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99897 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46956 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46778 * 120.00414 * 24 22 20 27 27 H 1.48498 * 109.46961 * 240.00151 * 24 22 20 28 28 H 1.09008 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47327 * 299.99881 * 1 2 3 30 30 H 1.08996 * 109.47508 * 60.00288 * 1 2 3 31 31 H 1.07991 * 120.01708 * 359.97438 * 6 5 4 32 32 H 1.07999 * 119.98315 * 179.97438 * 7 6 5 33 33 H 1.07995 * 119.98812 * 179.71858 * 10 8 7 34 34 H 1.07993 * 120.01394 * 180.22811 * 11 10 8 35 35 H 0.96997 * 119.99946 * 0.02562 * 14 12 2 36 36 H 1.09002 * 109.47284 * 299.99707 * 18 15 14 37 37 H 1.08999 * 109.47480 * 60.00276 * 18 15 14 38 38 H 1.08994 * 109.47455 * 300.00538 * 19 18 15 39 39 H 1.09004 * 109.46599 * 60.00467 * 19 18 15 40 40 H 0.97003 * 119.99791 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1118 0.0626 2.3047 6 6 1.6588 1.3735 2.3278 7 6 1.7662 2.1204 3.4850 8 6 2.3251 1.5609 4.6215 9 9 2.4300 2.2926 5.7523 10 6 2.7819 0.2542 4.5985 11 6 2.6711 -0.4968 3.4441 12 6 2.0323 -0.7104 -1.2304 13 8 2.6530 -1.7467 -1.1214 14 7 1.7918 -0.1943 -2.4520 15 16 2.3443 -0.9746 -3.8041 16 8 1.9345 -0.1429 -4.8808 17 8 3.7214 -1.2037 -3.5385 18 6 1.4312 -2.5418 -3.8270 19 6 1.8581 -3.3630 -5.0454 20 6 1.1000 -4.6653 -5.0641 21 1 0.3849 -4.8851 -4.2851 22 6 1.3185 -5.5758 -6.0762 23 7 2.1889 -5.3079 -7.0250 24 14 0.3782 -7.1897 -6.0997 25 1 -0.5344 -7.2479 -4.9298 26 1 -0.4156 -7.2818 -7.3514 27 1 1.3369 -8.3220 -6.0371 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.2225 1.8099 1.4416 32 1 1.4140 3.1412 3.5032 33 1 3.2218 -0.1796 5.4843 34 1 3.0241 -1.5172 3.4275 35 1 1.2958 0.6347 -2.5392 36 1 1.6475 -3.1017 -2.9171 37 1 0.3618 -2.3386 -3.8830 38 1 1.6416 -2.8030 -5.9550 39 1 2.9275 -3.5664 -4.9898 40 1 2.3430 -5.9486 -7.7368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776123549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:56 Heat of formation + Delta-G solvation = -194.835139 kcal Electronic energy + Delta-G solvation = -27337.405465 eV Core-core repulsion = 22965.446184 eV Total energy + Delta-G solvation = -4371.959281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.81838 -41.96967 -40.68473 -38.41032 -38.17406 -37.26596 -36.00997 -35.82909 -33.19179 -33.11016 -31.97473 -30.24362 -27.67168 -26.21657 -24.47147 -23.75393 -23.47697 -22.21101 -20.87154 -19.59416 -19.52674 -18.93710 -18.43676 -18.19785 -17.50605 -17.41231 -16.84034 -16.69073 -16.55439 -16.51790 -16.16476 -15.75796 -15.69720 -15.20128 -14.82366 -14.51101 -14.45815 -14.19878 -13.87647 -13.77352 -13.75478 -13.47227 -13.39800 -13.28718 -13.18149 -12.98179 -12.85822 -12.80175 -12.35920 -12.25947 -12.07027 -12.03430 -11.83010 -11.74522 -11.31267 -11.07380 -10.66908 -10.18723 -9.16337 -8.28104 -6.41710 -1.06914 0.14183 0.17670 0.82004 1.17898 1.39915 1.41119 1.54218 2.01158 2.36230 2.53518 2.55118 2.88077 3.05525 3.12478 3.32832 3.57374 3.72522 3.75642 3.77608 3.85144 3.99505 4.03427 4.14335 4.30042 4.48093 4.67730 4.68835 4.73016 4.90520 5.09421 5.14634 5.17098 5.21931 5.22317 5.23399 5.52741 5.66255 5.68723 6.03234 6.20094 6.34011 6.71154 7.28176 8.84402 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.019427 B = 0.002253 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.919233 B =12426.838967 C =13215.945927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.067 3.933 3 H 0.147 0.853 4 O -0.309 6.309 5 C 0.107 3.893 6 C -0.178 4.178 7 C -0.108 4.108 8 C 0.041 3.959 9 F -0.150 7.150 10 C -0.113 4.113 11 C -0.134 4.134 12 C 0.535 3.465 13 O -0.514 6.514 14 N -1.029 6.029 15 S 2.602 3.398 16 O -0.963 6.963 17 O -0.978 6.978 18 C -0.579 4.579 19 C 0.022 3.978 20 C -0.538 4.538 21 H 0.074 0.926 22 C -0.004 4.004 23 N -0.932 5.932 24 Si 0.975 3.025 25 H -0.257 1.257 26 H -0.274 1.274 27 H -0.280 1.280 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.172 0.828 32 H 0.163 0.837 33 H 0.156 0.844 34 H 0.143 0.857 35 H 0.454 0.546 36 H 0.132 0.868 37 H 0.156 0.844 38 H 0.018 0.982 39 H 0.004 0.996 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.924 18.483 22.341 29.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.006 3.994 3 H 0.165 0.835 4 O -0.222 6.222 5 C 0.062 3.938 6 C -0.197 4.197 7 C -0.126 4.126 8 C 0.022 3.978 9 F -0.128 7.128 10 C -0.131 4.131 11 C -0.153 4.153 12 C 0.322 3.678 13 O -0.385 6.385 14 N -0.797 5.797 15 S 2.700 3.300 16 O -0.953 6.953 17 O -0.968 6.968 18 C -0.712 4.712 19 C -0.017 4.017 20 C -0.577 4.577 21 H 0.092 0.908 22 C -0.203 4.203 23 N -0.572 5.572 24 Si 0.798 3.202 25 H -0.181 1.181 26 H -0.200 1.200 27 H -0.206 1.206 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.135 0.865 31 H 0.190 0.810 32 H 0.181 0.819 33 H 0.174 0.826 34 H 0.160 0.840 35 H 0.295 0.705 36 H 0.150 0.850 37 H 0.174 0.826 38 H 0.036 0.964 39 H 0.022 0.978 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.677 17.880 21.725 28.704 hybrid contribution -0.507 -0.805 -0.053 0.953 sum -6.184 17.075 21.672 28.275 Atomic orbital electron populations 1.22519 0.88971 1.05338 1.07066 1.22562 0.98131 0.97786 0.80923 0.83547 1.86219 1.81573 1.38001 1.16429 1.19279 0.96797 0.91334 0.86418 1.21459 1.04779 0.92746 1.00679 1.21232 0.98702 1.01916 0.90776 1.17870 1.05296 0.90977 0.83684 1.91477 1.94616 1.77124 1.49622 1.21139 1.00133 0.92511 0.99354 1.20486 1.02250 1.01900 0.90620 1.20887 0.77032 0.84632 0.85297 1.90958 1.37302 1.23920 1.86336 1.54788 1.66454 1.38238 1.20250 1.05379 0.75025 0.76964 0.72595 1.93577 1.83811 1.66061 1.51890 1.93558 1.33052 1.86431 1.83770 1.30245 1.14978 1.17385 1.08606 1.18838 0.96474 0.95834 0.90597 1.21497 1.23830 1.02033 1.10369 0.90797 1.26115 0.96296 1.02914 0.94928 1.70096 1.35611 1.37737 1.13719 0.85252 0.78353 0.77890 0.78682 1.18089 1.19954 1.20556 0.91329 0.87897 0.86550 0.81049 0.81943 0.82590 0.83965 0.70476 0.84978 0.82612 0.96384 0.97793 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 9.13 71.98 0.66 -0.69 16 2 C 0.07 0.94 2.64 29.85 0.08 1.02 16 3 H 0.15 0.89 6.31 -2.39 -0.02 0.88 16 4 O -0.31 -6.27 9.34 -73.94 -0.69 -6.96 16 5 C 0.11 1.74 6.60 22.49 0.15 1.89 16 6 C -0.18 -1.84 8.24 22.36 0.18 -1.65 16 7 C -0.11 -1.15 10.02 22.30 0.22 -0.93 16 8 C 0.04 0.60 7.30 22.37 0.16 0.76 16 9 F -0.15 -2.49 17.27 44.97 0.78 -1.71 16 10 C -0.11 -1.60 10.02 22.30 0.22 -1.38 16 11 C -0.13 -2.19 9.99 22.36 0.22 -1.97 16 12 C 0.54 12.58 6.92 87.66 0.61 13.19 16 13 O -0.51 -17.98 14.61 24.19 0.35 -17.63 16 14 N -1.03 -20.99 5.57 -173.53 -0.97 -21.96 16 15 S 2.60 88.67 5.11 -56.49 -0.29 88.38 16 16 O -0.96 -35.04 18.08 -127.65 -2.31 -37.35 16 17 O -0.98 -42.47 17.04 -120.72 -2.06 -44.53 16 18 C -0.58 -22.16 5.82 71.98 0.42 -21.74 16 19 C 0.02 1.13 4.98 29.85 0.15 1.28 16 20 C -0.54 -30.08 9.11 25.60 0.23 -29.85 16 21 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 22 C 0.00 -0.23 5.46 84.66 0.46 0.24 16 23 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 24 Si 0.97 43.60 29.54 68.60 2.03 45.62 16 25 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 28 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.10 0.40 6.91 -2.39 -0.02 0.38 16 30 H 0.12 0.15 7.92 -2.39 -0.02 0.13 16 31 H 0.17 0.56 5.43 -2.92 -0.02 0.55 16 32 H 0.16 0.92 8.06 -2.91 -0.02 0.89 16 33 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.45 4.17 8.57 -96.75 -0.83 3.34 16 36 H 0.13 5.07 7.19 -2.39 -0.02 5.05 16 37 H 0.16 4.77 8.14 -2.39 -0.02 4.75 16 38 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -86.43 362.49 1.17 -85.26 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 0.27 Total: 7.11 kcal Atomic # 6 Polarization: -43.59 SS G_CDS: 3.77 Total: -39.82 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -0.68 Total: -78.37 kcal Atomic # 8 Polarization: -101.76 SS G_CDS: -4.70 Total: -106.46 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.78 Total: -1.71 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 88.67 SS G_CDS: -0.29 Total: 88.38 kcal Total: -86.43 1.17 -85.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776123549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.580 kcal (2) G-P(sol) polarization free energy of solvation -86.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds