Wall clock time and date at job start Wed Apr 1 2020 03:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 120.00359 * 2 1 4 4 H 1.48502 * 109.46709 * 270.00046 * 3 2 1 5 5 H 1.48498 * 109.46832 * 29.99593 * 3 2 1 6 6 H 1.48498 * 109.47404 * 150.00156 * 3 2 1 7 7 C 1.38952 * 119.99694 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99981 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00350 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00424 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99675 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00225 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47320 * 180.02562 * 12 10 9 14 14 C 1.34776 * 120.00278 * 179.97438 * 13 12 10 15 15 O 1.21599 * 119.99603 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00012 * 180.02562 * 14 13 12 17 17 C 1.40203 * 119.99595 * 185.31759 * 16 14 13 18 18 C 1.38850 * 119.98626 * 213.27035 * 17 16 14 19 19 C 1.38049 * 120.01201 * 180.02562 * 18 17 16 20 20 C 1.38936 * 119.98779 * 359.97438 * 19 18 17 21 21 S 1.76205 * 120.01058 * 179.97438 * 20 19 18 22 22 C 1.81397 * 102.99936 * 180.02562 * 21 20 19 23 23 F 1.39904 * 109.47257 * 299.99784 * 22 21 20 24 24 F 1.39909 * 109.47245 * 59.99699 * 22 21 20 25 25 C 1.38937 * 119.97981 * 0.25701 * 20 19 18 26 26 C 1.38055 * 119.98722 * 359.50667 * 25 20 19 27 27 H 0.97003 * 119.99688 * 0.02562 * 1 2 3 28 28 H 0.97006 * 119.99906 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.47323 * 59.99793 * 12 10 9 30 30 H 1.09003 * 109.46871 * 299.99879 * 12 10 9 31 31 H 0.97003 * 120.00009 * 359.97438 * 13 12 10 32 32 H 0.96996 * 120.00069 * 5.31520 * 16 14 13 33 33 H 1.08007 * 119.99364 * 359.97438 * 18 17 16 34 34 H 1.07996 * 120.00680 * 179.97438 * 19 18 17 35 35 H 1.09004 * 109.47264 * 179.97438 * 22 21 20 36 36 H 1.08005 * 120.00901 * 179.72782 * 25 20 19 37 37 H 1.08000 * 119.99426 * 180.20942 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0087 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5579 -0.0021 12 6 1.2436 -4.8629 -0.0022 13 7 2.1955 -5.9765 -0.0027 14 6 1.7463 -7.2472 -0.0027 15 8 0.5507 -7.4693 -0.0019 16 7 2.6220 -8.2716 -0.0026 17 6 2.1586 -9.5900 -0.1152 18 6 2.8290 -10.6190 0.5326 19 6 2.3734 -11.9174 0.4217 20 6 1.2435 -12.1944 -0.3379 21 16 0.6619 -13.8516 -0.4804 22 6 -0.7952 -13.6822 -1.5475 23 9 -1.7262 -12.8365 -0.9348 24 9 -0.4113 -13.1393 -2.7784 25 6 0.5758 -11.1651 -0.9899 26 6 1.0294 -9.8663 -0.8744 27 1 -0.4850 0.8401 -0.0004 28 1 0.3532 -2.3906 -0.0005 29 1 0.6165 -4.9201 -0.8919 30 1 0.6173 -4.9212 0.8881 31 1 3.1492 -5.7993 -0.0030 32 1 3.5729 -8.0967 0.0752 33 1 3.7075 -10.4036 1.1228 34 1 2.8951 -12.7177 0.9253 35 1 -1.2444 -14.6624 -1.7074 36 1 -0.3000 -11.3805 -1.5841 37 1 0.5085 -9.0657 -1.3784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806080680.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:19 Heat of formation + Delta-G solvation = -122.272008 kcal Electronic energy + Delta-G solvation = -26013.863817 eV Core-core repulsion = 21553.883556 eV Total energy + Delta-G solvation = -4459.980261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.73982 -47.73167 -40.70759 -38.99528 -38.14561 -34.93141 -34.53543 -33.78169 -31.43598 -31.31506 -30.04666 -27.55574 -27.38369 -24.64802 -23.39562 -22.83062 -20.83247 -19.69177 -19.20374 -18.54415 -18.44767 -18.09086 -17.92305 -17.54583 -17.01351 -15.89579 -15.68410 -15.20308 -15.02692 -14.66016 -14.63525 -14.61290 -14.18991 -14.12404 -14.05357 -13.93422 -13.64873 -13.53188 -13.31049 -13.21608 -12.26733 -12.12123 -11.91560 -11.66785 -11.50931 -11.16244 -11.00593 -10.85615 -10.48979 -10.36014 -10.17463 -9.67810 -9.40792 -9.22012 -8.91117 -8.69252 -8.14664 -7.76733 -6.55313 -3.97554 0.31679 0.85020 1.12129 1.44449 2.52029 3.03081 3.09203 3.19915 3.24802 3.25073 3.53718 3.69381 3.82645 3.90751 4.02221 4.20238 4.53890 4.62865 4.81361 5.02416 5.13157 5.15891 5.25729 5.64610 5.75360 5.81075 5.90547 5.96950 6.00826 6.06775 6.23871 6.56029 6.73497 6.86321 7.42329 7.87568 7.95805 8.39810 8.51830 9.00372 9.34444 9.81901 10.61411 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.028810 B = 0.001727 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.637898 B =16212.224334 C =16895.623603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.547 5.547 10 C 0.427 3.573 11 O -0.598 6.598 12 C 0.127 3.873 13 N -0.716 5.716 14 C 0.703 3.297 15 O -0.577 6.577 16 N -0.688 5.688 17 C 0.186 3.814 18 C -0.136 4.136 19 C -0.067 4.067 20 C -0.120 4.120 21 S -0.104 6.104 22 C 0.273 3.727 23 F -0.179 7.179 24 F -0.180 7.180 25 C -0.097 4.097 26 C -0.102 4.102 27 H 0.275 0.725 28 H 0.396 0.604 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.409 0.591 32 H 0.410 0.590 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.156 0.844 36 H 0.129 0.871 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.796 -27.898 -1.538 27.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.124 0.876 9 N -0.182 5.182 10 C 0.212 3.788 11 O -0.485 6.485 12 C -0.001 4.001 13 N -0.373 5.373 14 C 0.403 3.597 15 O -0.455 6.455 16 N -0.336 5.336 17 C 0.089 3.911 18 C -0.159 4.159 19 C -0.091 4.091 20 C -0.233 4.233 21 S 0.132 5.868 22 C 0.110 3.890 23 F -0.160 7.160 24 F -0.162 7.162 25 C -0.121 4.121 26 C -0.124 4.124 27 H 0.085 0.915 28 H 0.230 0.770 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.247 0.753 32 H 0.246 0.754 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.173 0.827 36 H 0.146 0.854 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.687 -28.808 -1.136 28.839 hybrid contribution 0.121 2.337 -0.488 2.390 sum 0.808 -26.471 -1.623 26.533 Atomic orbital electron populations 1.69612 1.06022 1.28605 1.49073 1.25341 0.95685 0.99989 0.96708 0.85800 0.79217 0.80425 0.78511 1.20238 1.20768 1.19310 1.19729 0.93467 0.81949 1.48391 0.87643 1.41784 1.09524 1.04444 1.62408 1.19700 0.88282 0.84952 0.85824 1.90496 1.13702 1.86808 1.57529 1.20857 0.91113 0.84714 1.03444 1.44785 1.11633 1.03075 1.77785 1.15834 0.85100 0.80600 0.78145 1.90948 1.13663 1.83815 1.57027 1.42710 1.10267 1.03512 1.77105 1.17595 0.95456 0.82890 0.95184 1.20777 1.02397 0.91632 1.01087 1.20428 0.94419 0.96409 0.97802 1.21276 1.01343 0.94712 1.05949 1.86126 1.30138 1.08765 1.61773 1.24286 0.89646 0.94678 0.80407 1.93142 1.66706 1.73739 1.82438 1.93127 1.91144 1.87933 1.43980 1.21237 0.99565 0.92133 0.99134 1.21134 0.96664 0.96530 0.98062 0.91526 0.76978 0.89703 0.89718 0.75292 0.75404 0.84716 0.84939 0.82733 0.85365 0.83715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.58 13.05 55.50 0.72 -22.86 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.29 29.55 -169.99 -5.02 15.27 16 4 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.31 -8.19 9.68 -14.93 -0.14 -8.33 16 8 H 0.11 2.94 7.16 -52.48 -0.38 2.56 16 9 N -0.55 -13.30 5.29 -10.96 -0.06 -13.36 16 10 C 0.43 9.52 7.85 -10.99 -0.09 9.43 16 11 O -0.60 -14.88 15.24 5.54 0.08 -14.80 16 12 C 0.13 2.26 6.15 -5.20 -0.03 2.23 16 13 N -0.72 -11.32 5.53 -66.41 -0.37 -11.69 16 14 C 0.70 10.84 8.30 -86.92 -0.72 10.12 16 15 O -0.58 -10.67 14.03 5.28 0.07 -10.59 16 16 N -0.69 -8.09 5.36 -14.17 -0.08 -8.17 16 17 C 0.19 2.23 6.29 -83.58 -0.53 1.71 16 18 C -0.14 -1.30 9.95 -39.42 -0.39 -1.69 16 19 C -0.07 -0.62 9.78 -39.39 -0.39 -1.01 16 20 C -0.12 -1.26 6.10 -39.06 -0.24 -1.50 16 21 S -0.10 -0.84 22.16 -107.50 -2.38 -3.22 16 22 C 0.27 1.87 5.37 101.05 0.54 2.42 16 23 F -0.18 -1.65 15.66 2.25 0.04 -1.62 16 24 F -0.18 -1.57 15.62 2.25 0.04 -1.54 16 25 C -0.10 -1.17 8.68 -39.39 -0.34 -1.51 16 26 C -0.10 -1.35 8.65 -39.42 -0.34 -1.69 16 27 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.40 9.27 7.90 -40.82 -0.32 8.95 16 29 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 31 H 0.41 6.20 7.46 -40.82 -0.30 5.89 16 32 H 0.41 3.53 8.83 -40.82 -0.36 3.16 16 33 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.16 0.39 8.14 -51.92 -0.42 -0.03 16 36 H 0.13 1.49 4.54 -52.48 -0.24 1.26 16 37 H 0.15 2.15 6.41 -52.49 -0.34 1.81 16 LS Contribution 346.27 15.07 5.22 5.22 Total: -1.00 -32.32 346.27 -7.68 -40.00 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -3.19 Total: 16.61 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: -2.76 Total: 10.74 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.22 Total: -56.07 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: 0.16 Total: -25.39 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.07 Total: -3.15 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: -0.84 SS G_CDS: -2.38 Total: -3.22 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.32 -7.68 -40.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806080680.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.272 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds