Wall clock time and date at job start Wed Apr 1 2020 03:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 120.00359 * 2 1 4 4 H 1.48502 * 109.46709 * 270.00046 * 3 2 1 5 5 H 1.48498 * 109.46832 * 29.99593 * 3 2 1 6 6 H 1.48498 * 109.47404 * 150.00156 * 3 2 1 7 7 C 1.38952 * 119.99694 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99981 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00350 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00424 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99675 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00225 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47320 * 180.02562 * 12 10 9 14 14 C 1.34776 * 120.00278 * 179.97438 * 13 12 10 15 15 O 1.21599 * 119.99603 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00012 * 180.02562 * 14 13 12 17 17 C 1.40203 * 119.99595 * 185.31759 * 16 14 13 18 18 C 1.38850 * 119.98626 * 213.27035 * 17 16 14 19 19 C 1.38049 * 120.01201 * 180.02562 * 18 17 16 20 20 C 1.38936 * 119.98779 * 359.97438 * 19 18 17 21 21 S 1.76205 * 120.01058 * 179.97438 * 20 19 18 22 22 C 1.81397 * 102.99936 * 180.02562 * 21 20 19 23 23 F 1.39904 * 109.47257 * 299.99784 * 22 21 20 24 24 F 1.39909 * 109.47245 * 59.99699 * 22 21 20 25 25 C 1.38937 * 119.97981 * 0.25701 * 20 19 18 26 26 C 1.38055 * 119.98722 * 359.50667 * 25 20 19 27 27 H 0.97003 * 119.99688 * 0.02562 * 1 2 3 28 28 H 0.97006 * 119.99906 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.47323 * 59.99793 * 12 10 9 30 30 H 1.09003 * 109.46871 * 299.99879 * 12 10 9 31 31 H 0.97003 * 120.00009 * 359.97438 * 13 12 10 32 32 H 0.96996 * 120.00069 * 5.31520 * 16 14 13 33 33 H 1.08007 * 119.99364 * 359.97438 * 18 17 16 34 34 H 1.07996 * 120.00680 * 179.97438 * 19 18 17 35 35 H 1.09004 * 109.47264 * 179.97438 * 22 21 20 36 36 H 1.08005 * 120.00901 * 179.72782 * 25 20 19 37 37 H 1.08000 * 119.99426 * 180.20942 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0087 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5579 -0.0021 12 6 1.2436 -4.8629 -0.0022 13 7 2.1955 -5.9765 -0.0027 14 6 1.7463 -7.2472 -0.0027 15 8 0.5507 -7.4693 -0.0019 16 7 2.6220 -8.2716 -0.0026 17 6 2.1586 -9.5900 -0.1152 18 6 2.8290 -10.6190 0.5326 19 6 2.3734 -11.9174 0.4217 20 6 1.2435 -12.1944 -0.3379 21 16 0.6619 -13.8516 -0.4804 22 6 -0.7952 -13.6822 -1.5475 23 9 -1.7262 -12.8365 -0.9348 24 9 -0.4113 -13.1393 -2.7784 25 6 0.5758 -11.1651 -0.9899 26 6 1.0294 -9.8663 -0.8744 27 1 -0.4850 0.8401 -0.0004 28 1 0.3532 -2.3906 -0.0005 29 1 0.6165 -4.9201 -0.8919 30 1 0.6173 -4.9212 0.8881 31 1 3.1492 -5.7993 -0.0030 32 1 3.5729 -8.0967 0.0752 33 1 3.7075 -10.4036 1.1228 34 1 2.8951 -12.7177 0.9253 35 1 -1.2444 -14.6624 -1.7074 36 1 -0.3000 -11.3805 -1.5841 37 1 0.5085 -9.0657 -1.3784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806080680.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:18 Heat of formation + Delta-G solvation = -145.039557 kcal Electronic energy + Delta-G solvation = -26014.851092 eV Core-core repulsion = 21553.883556 eV Total energy + Delta-G solvation = -4460.967536 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.36041 -48.37040 -41.82775 -40.37393 -39.56117 -36.31534 -35.91663 -35.39649 -33.38677 -32.14166 -31.06044 -28.97422 -28.00991 -26.45289 -24.32426 -23.76069 -21.98169 -21.40510 -20.17224 -19.95564 -19.55899 -19.10702 -18.54255 -18.51121 -17.75083 -17.45834 -17.07207 -16.67262 -16.39341 -16.11944 -15.76751 -15.52374 -15.38690 -15.28169 -15.15528 -14.70309 -14.66837 -14.55429 -14.24278 -13.99361 -13.87855 -13.66374 -13.55007 -12.91892 -12.72979 -12.46169 -12.27827 -12.13106 -11.89924 -11.62440 -11.57693 -11.34713 -10.57822 -10.42276 -10.12295 -10.07596 -10.04194 -8.54166 -8.51768 -6.02000 -0.25508 -0.01684 0.28553 0.71689 1.35748 1.36293 1.44053 1.56096 1.84752 1.92835 2.27457 2.63646 2.78636 2.93933 3.15547 3.19364 3.32858 3.40023 3.72806 3.83961 4.17156 4.21736 4.31331 4.39411 4.42479 4.44938 4.80711 4.94866 5.11681 5.17437 5.19976 5.35364 5.38031 5.81273 5.84676 5.91218 6.46624 6.83196 7.02587 7.31000 7.43713 7.92856 8.65015 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.028810 B = 0.001727 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.637898 B =16212.224334 C =16895.623603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.012 4.012 3 Si 0.997 3.003 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.434 3.566 11 O -0.623 6.623 12 C 0.141 3.859 13 N -0.714 5.714 14 C 0.705 3.295 15 O -0.610 6.610 16 N -0.671 5.671 17 C 0.165 3.835 18 C -0.122 4.122 19 C -0.066 4.066 20 C -0.130 4.130 21 S -0.085 6.085 22 C 0.265 3.735 23 F -0.194 7.194 24 F -0.192 7.192 25 C -0.111 4.111 26 C -0.123 4.123 27 H 0.280 0.720 28 H 0.399 0.601 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.414 0.586 32 H 0.426 0.574 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.205 0.795 36 H 0.124 0.876 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.700 -29.579 -0.955 29.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.221 3.779 11 O -0.511 6.511 12 C 0.012 3.988 13 N -0.372 5.372 14 C 0.405 3.595 15 O -0.490 6.490 16 N -0.320 5.320 17 C 0.068 3.932 18 C -0.144 4.144 19 C -0.089 4.089 20 C -0.243 4.243 21 S 0.152 5.848 22 C 0.103 3.897 23 F -0.176 7.176 24 F -0.174 7.174 25 C -0.134 4.134 26 C -0.146 4.146 27 H 0.089 0.911 28 H 0.233 0.767 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.252 0.748 32 H 0.265 0.735 33 H 0.185 0.815 34 H 0.180 0.820 35 H 0.221 0.779 36 H 0.142 0.858 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.616 -30.534 -0.555 30.582 hybrid contribution -0.164 2.672 -0.682 2.762 sum 1.452 -27.862 -1.237 27.928 Atomic orbital electron populations 1.69680 1.07014 1.29644 1.49227 1.26143 0.96549 1.02737 0.95807 0.84859 0.77921 0.76467 0.78688 1.19596 1.19726 1.19383 1.19739 0.92990 0.83484 1.50377 0.89462 1.41835 1.09629 1.04600 1.63351 1.20366 0.88110 0.85843 0.83630 1.90473 1.15094 1.87522 1.58056 1.20640 0.90892 0.82868 1.04380 1.44651 1.11416 1.02878 1.78220 1.15884 0.85021 0.80812 0.77776 1.90933 1.15306 1.84256 1.58478 1.42458 1.10598 1.02788 1.76186 1.17775 0.95915 0.83245 0.96313 1.21113 1.02550 0.90899 0.99877 1.20852 0.93859 0.97143 0.97046 1.21609 1.01523 0.95932 1.05261 1.85988 1.30489 1.06412 1.61931 1.24883 0.89177 0.96180 0.79477 1.93110 1.67206 1.74543 1.82735 1.93101 1.91275 1.88320 1.44714 1.21216 0.99975 0.92234 1.00001 1.21030 0.97705 0.96532 0.99307 0.91072 0.76679 0.88747 0.88732 0.74788 0.73489 0.81520 0.81999 0.77913 0.85837 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.36 13.05 21.66 0.28 -48.08 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 3 Si 1.00 41.40 29.55 68.60 2.03 43.42 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.34 -18.31 9.68 84.04 0.81 -17.50 16 8 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 9 N -0.56 -27.63 5.29 -306.98 -1.62 -29.25 16 10 C 0.43 19.50 7.85 87.66 0.69 20.19 16 11 O -0.62 -31.27 15.24 -3.08 -0.05 -31.32 16 12 C 0.14 4.99 6.15 85.63 0.53 5.51 16 13 N -0.71 -22.34 5.53 -482.29 -2.67 -25.01 16 14 C 0.70 21.62 8.30 179.06 1.49 23.11 16 15 O -0.61 -22.93 14.03 -4.03 -0.06 -22.98 16 16 N -0.67 -15.23 5.36 -317.00 -1.70 -16.93 16 17 C 0.16 3.82 6.29 38.09 0.24 4.06 16 18 C -0.12 -2.03 9.95 22.37 0.22 -1.80 16 19 C -0.07 -1.05 9.78 22.39 0.22 -0.83 16 20 C -0.13 -2.56 6.10 22.60 0.14 -2.42 16 21 S -0.08 -1.19 22.16 -56.49 -1.25 -2.45 16 22 C 0.27 3.21 5.37 113.37 0.61 3.82 16 23 F -0.19 -3.47 15.66 44.97 0.70 -2.77 16 24 F -0.19 -3.21 15.62 44.97 0.70 -2.51 16 25 C -0.11 -2.68 8.68 22.39 0.19 -2.49 16 26 C -0.12 -3.38 8.65 22.37 0.19 -3.18 16 27 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 28 H 0.40 19.01 7.90 -92.70 -0.73 18.27 16 29 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 30 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 31 H 0.41 12.31 7.46 -92.71 -0.69 11.62 16 32 H 0.43 6.65 8.83 -92.71 -0.82 5.83 16 33 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 34 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 35 H 0.20 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.12 2.99 4.54 -2.91 -0.01 2.98 16 37 H 0.12 3.80 6.41 -2.91 -0.02 3.78 16 Total: -1.00 -70.83 346.27 1.12 -69.71 By element: Atomic # 1 Polarization: 40.87 SS G_CDS: -1.05 Total: 39.82 kcal Atomic # 6 Polarization: 22.54 SS G_CDS: 5.80 Total: 28.34 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -5.71 Total: -119.26 kcal Atomic # 8 Polarization: -54.20 SS G_CDS: -0.10 Total: -54.30 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 1.41 Total: -5.28 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: -1.19 SS G_CDS: -1.25 Total: -2.45 kcal Total: -70.83 1.12 -69.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806080680.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.333 kcal (2) G-P(sol) polarization free energy of solvation -70.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds