Wall clock time and date at job start Wed Apr 1 2020 03:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 119.99626 * 2 1 4 4 H 1.48504 * 109.47182 * 239.99924 * 3 2 1 5 5 H 1.48501 * 109.47430 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47184 * 119.99761 * 3 2 1 7 7 C 1.38945 * 120.00471 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00122 * 180.02562 * 7 2 1 9 9 N 1.37105 * 119.99745 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99602 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00359 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99720 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47072 * 180.02562 * 12 10 9 14 14 C 1.34772 * 119.99881 * 180.02562 * 13 12 10 15 15 O 1.21586 * 120.00064 * 359.97438 * 14 13 12 16 16 N 1.34783 * 120.00091 * 180.02562 * 14 13 12 17 17 C 1.39940 * 120.00046 * 185.31483 * 16 14 13 18 18 C 1.38958 * 120.03117 * 213.29108 * 17 16 14 19 19 C 1.38159 * 120.09139 * 180.02562 * 18 17 16 20 20 C 1.38149 * 120.14910 * 359.68370 * 19 18 17 21 21 C 1.39004 * 120.05674 * 0.59387 * 20 19 18 22 22 S 1.76205 * 120.04188 * 179.69876 * 21 20 19 23 23 C 1.81394 * 103.00024 * 359.72747 * 22 21 20 24 24 F 1.39902 * 109.47274 * 60.00196 * 23 22 21 25 25 F 1.39903 * 109.47267 * 299.99904 * 23 22 21 26 26 C 1.38695 * 120.02945 * 33.31189 * 17 16 14 27 27 H 0.97002 * 120.00584 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99866 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.46715 * 59.99872 * 12 10 9 30 30 H 1.09003 * 109.46771 * 300.00366 * 12 10 9 31 31 H 0.96994 * 120.00131 * 359.97438 * 13 12 10 32 32 H 0.96996 * 119.99892 * 5.31340 * 16 14 13 33 33 H 1.08003 * 119.95609 * 0.02906 * 18 17 16 34 34 H 1.08004 * 119.92162 * 180.02562 * 19 18 17 35 35 H 1.07999 * 119.96880 * 180.29788 * 20 19 18 36 36 H 1.09000 * 109.47025 * 180.02562 * 23 22 21 37 37 H 1.07989 * 120.07390 * 0.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1017 1.6966 1.2125 7 6 2.0089 -1.2032 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0016 10 6 1.9974 -3.5577 0.0026 11 8 3.2103 -3.5577 0.0031 12 6 1.2440 -4.8629 0.0032 13 7 2.1960 -5.9764 0.0050 14 6 1.7469 -7.2470 0.0052 15 8 0.5515 -7.4693 0.0045 16 7 2.6227 -8.2715 0.0073 17 6 2.1605 -9.5875 -0.1046 18 6 2.8296 -10.6174 0.5455 19 6 2.3746 -11.9172 0.4353 20 6 1.2495 -12.1972 -0.3158 21 6 0.5787 -11.1726 -0.9734 22 16 -0.8518 -11.5313 -1.9377 23 6 -1.0227 -13.3286 -1.7613 24 9 -1.1905 -13.6507 -0.4103 25 9 0.1274 -13.9567 -2.2512 26 6 1.0342 -9.8653 -0.8649 27 1 -0.4851 0.8400 -0.0004 28 1 0.3535 -2.3906 0.0016 29 1 0.6177 -4.9212 -0.8869 30 1 0.6169 -4.9200 0.8930 31 1 3.1496 -5.7991 0.0052 32 1 3.5735 -8.0965 0.0865 33 1 3.7066 -10.4014 1.1377 34 1 2.8966 -12.7155 0.9421 35 1 0.8935 -13.2137 -0.3959 36 1 -1.8905 -13.6682 -2.3267 37 1 0.5130 -9.0667 -1.3717 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806253084.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:37 Heat of formation + Delta-G solvation = -121.769016 kcal Electronic energy + Delta-G solvation = -26055.675716 eV Core-core repulsion = 21595.717266 eV Total energy + Delta-G solvation = -4459.958450 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.74131 -47.73109 -40.71804 -38.98124 -38.13896 -34.94329 -34.53431 -33.77975 -31.43182 -31.30845 -30.01777 -27.61203 -27.26840 -24.62754 -23.48130 -22.80885 -20.81965 -19.68763 -19.30865 -18.51685 -18.38671 -18.07320 -17.93051 -17.67204 -16.39388 -15.86787 -15.70866 -15.64552 -15.02050 -14.84486 -14.64741 -14.58974 -14.21293 -14.10822 -14.05891 -13.86423 -13.70995 -13.50632 -13.28946 -12.89080 -12.26197 -12.10213 -12.01821 -11.66152 -11.46669 -11.13722 -10.90556 -10.75131 -10.53384 -10.35198 -10.15643 -9.99375 -9.66434 -8.98500 -8.68914 -8.38280 -8.14195 -8.00871 -6.54729 -3.97160 0.35448 0.86760 1.12056 1.47965 2.52312 3.04092 3.11502 3.19697 3.23298 3.25327 3.53469 3.69869 3.84738 3.92369 4.02632 4.20917 4.60315 4.80481 4.81830 4.88395 5.13567 5.19485 5.21472 5.51388 5.79369 5.90488 5.91156 6.00901 6.05490 6.08268 6.17878 6.56062 6.74205 6.85897 7.42539 7.87811 7.95903 8.40238 8.51954 9.00668 9.34820 9.82316 10.61889 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.027204 B = 0.001803 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.025121 B =15527.119518 C =16260.864363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.307 4.307 8 H 0.105 0.895 9 N -0.547 5.547 10 C 0.427 3.573 11 O -0.599 6.599 12 C 0.127 3.873 13 N -0.716 5.716 14 C 0.703 3.297 15 O -0.577 6.577 16 N -0.688 5.688 17 C 0.193 3.807 18 C -0.145 4.145 19 C -0.079 4.079 20 C -0.145 4.145 21 C -0.076 4.076 22 S -0.085 6.085 23 C 0.268 3.732 24 F -0.181 7.181 25 F -0.182 7.182 26 C -0.092 4.092 27 H 0.275 0.725 28 H 0.396 0.604 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.409 0.591 32 H 0.411 0.589 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.156 0.844 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.190 -26.528 -2.426 26.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.181 5.181 10 C 0.212 3.788 11 O -0.485 6.485 12 C -0.001 4.001 13 N -0.372 5.372 14 C 0.403 3.597 15 O -0.454 6.454 16 N -0.335 5.335 17 C 0.095 3.905 18 C -0.168 4.168 19 C -0.100 4.100 20 C -0.169 4.169 21 C -0.189 4.189 22 S 0.153 5.847 23 C 0.105 3.895 24 F -0.162 7.162 25 F -0.164 7.164 26 C -0.118 4.118 27 H 0.085 0.915 28 H 0.230 0.770 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.247 0.753 32 H 0.247 0.753 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.173 0.827 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.406 -25.771 -3.092 25.994 hybrid contribution 1.533 0.223 0.877 1.780 sum 0.127 -25.548 -2.215 25.644 Atomic orbital electron populations 1.69603 1.06013 1.28720 1.48998 1.25337 0.95682 0.99979 0.96689 0.85861 0.78778 0.80092 0.79166 1.19756 1.20829 1.19759 1.19679 0.93439 0.81961 1.48511 0.87698 1.41778 1.09521 1.04434 1.62407 1.19697 0.88277 0.84949 0.85832 1.90492 1.13709 1.86803 1.57540 1.20860 0.91109 0.84711 1.03451 1.44776 1.11638 1.03064 1.77772 1.15840 0.85105 0.80619 0.78155 1.90948 1.13650 1.83789 1.56995 1.42621 1.10312 1.03418 1.77182 1.17271 0.95066 0.83044 0.95082 1.20974 1.02452 0.92341 1.01021 1.20775 0.95419 0.96041 0.97720 1.21275 0.97467 0.98100 1.00034 1.21246 0.98512 0.96724 1.02423 1.86510 1.33558 1.02020 1.62640 1.24373 0.90023 0.94457 0.80643 1.93118 1.95593 1.93567 1.33960 1.93113 1.52193 1.83788 1.87264 1.20733 0.97294 0.94712 0.99055 0.91468 0.76970 0.89698 0.89712 0.75289 0.75320 0.85047 0.85011 0.85629 0.82667 0.83585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.57 13.05 55.50 0.72 -22.84 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.28 29.55 -169.99 -5.02 15.26 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.31 -8.20 9.68 -14.93 -0.14 -8.34 16 8 H 0.11 2.91 7.16 -52.49 -0.38 2.54 16 9 N -0.55 -13.29 5.29 -10.96 -0.06 -13.35 16 10 C 0.43 9.52 7.85 -10.98 -0.09 9.43 16 11 O -0.60 -14.88 15.24 5.55 0.08 -14.80 16 12 C 0.13 2.26 6.15 -5.19 -0.03 2.23 16 13 N -0.72 -11.33 5.53 -66.41 -0.37 -11.70 16 14 C 0.70 10.87 8.30 -86.92 -0.72 10.15 16 15 O -0.58 -10.69 14.03 5.29 0.07 -10.61 16 16 N -0.69 -8.16 5.35 -14.24 -0.08 -8.24 16 17 C 0.19 2.35 6.28 -83.72 -0.53 1.82 16 18 C -0.15 -1.40 9.96 -39.34 -0.39 -1.79 16 19 C -0.08 -0.73 10.03 -39.64 -0.40 -1.13 16 20 C -0.14 -1.53 8.68 -39.33 -0.34 -1.88 16 21 C -0.08 -0.91 6.10 -39.06 -0.24 -1.15 16 22 S -0.08 -0.85 22.16 -107.50 -2.38 -3.23 16 23 C 0.27 1.90 5.37 101.05 0.54 2.44 16 24 F -0.18 -1.58 15.62 2.25 0.04 -1.54 16 25 F -0.18 -1.51 15.66 2.25 0.04 -1.47 16 26 C -0.09 -1.25 8.40 -39.18 -0.33 -1.58 16 27 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.40 9.27 7.90 -40.82 -0.32 8.95 16 29 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 31 H 0.41 6.21 7.46 -40.82 -0.30 5.90 16 32 H 0.41 3.57 8.83 -40.82 -0.36 3.20 16 33 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 35 H 0.13 1.22 4.54 -52.49 -0.24 0.98 16 36 H 0.16 0.46 8.14 -51.92 -0.42 0.04 16 37 H 0.15 2.24 6.41 -52.49 -0.34 1.90 16 LS Contribution 346.27 15.07 5.22 5.22 Total: -1.00 -32.34 346.27 -7.68 -40.02 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -3.19 Total: 16.50 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: -2.76 Total: 10.79 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.22 Total: -56.13 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: 0.16 Total: -25.41 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.07 Total: -3.01 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: -0.85 SS G_CDS: -2.38 Total: -3.23 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.34 -7.68 -40.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806253084.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.745 kcal (2) G-P(sol) polarization free energy of solvation -32.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds