Wall clock time and date at job start Wed Apr 1 2020 03:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99818 * 2 1 4 4 H 1.48496 * 109.47296 * 240.00063 * 3 2 1 5 5 H 1.48497 * 109.46890 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46968 * 119.99836 * 3 2 1 7 7 C 1.37874 * 120.00310 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00003 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00015 * 0.02562 * 7 2 1 10 10 O 1.42894 * 109.47506 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00589 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47409 * 179.97438 * 11 10 9 13 13 O 1.45199 * 109.47633 * 64.99304 * 12 11 10 14 14 C 1.34221 * 117.00329 * 179.97438 * 13 12 11 15 15 O 1.20830 * 119.99920 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00292 * 180.02562 * 14 13 12 17 17 F 1.39907 * 109.46966 * 85.00094 * 16 14 13 18 18 F 1.39901 * 109.46972 * 325.00356 * 16 14 13 19 19 C 1.50696 * 109.47481 * 205.00023 * 16 14 13 20 20 C 1.38238 * 119.99764 * 89.99892 * 19 16 14 21 21 C 1.38234 * 119.99693 * 179.97438 * 20 19 16 22 22 C 1.38234 * 120.00240 * 0.02562 * 21 20 19 23 23 N 1.48026 * 119.99930 * 179.97438 * 22 21 20 24 24 O 1.21793 * 119.99867 * 0.02562 * 23 22 21 25 25 O 1.21799 * 119.99956 * 179.97438 * 23 22 21 26 26 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 27 27 C 1.38234 * 120.00189 * 270.02215 * 19 16 14 28 28 H 0.97004 * 119.99998 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47411 * 59.99487 * 9 7 2 30 30 H 1.09000 * 109.46933 * 299.99899 * 9 7 2 31 31 H 1.09000 * 109.47204 * 59.98961 * 11 10 9 32 32 H 1.09003 * 109.46825 * 299.99513 * 11 10 9 33 33 H 1.09005 * 109.46886 * 304.99052 * 12 11 10 34 34 H 1.09004 * 109.47272 * 184.99964 * 12 11 10 35 35 H 1.07991 * 120.00287 * 0.02562 * 20 19 16 36 36 H 1.08004 * 120.00214 * 179.97438 * 21 20 19 37 37 H 1.08004 * 119.99939 * 179.72815 * 26 22 21 38 38 H 1.07999 * 119.99990 * 359.97438 * 27 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 8 2.1798 -3.5852 -0.0015 11 6 1.5653 -4.8754 -0.0031 12 6 2.6483 -5.9561 -0.0033 13 8 3.3988 -5.8896 1.2378 14 6 4.3928 -6.7774 1.3973 15 8 4.6282 -7.5832 0.5282 16 6 5.2151 -6.7692 2.6601 17 9 4.5654 -7.5218 3.6445 18 9 5.3708 -5.4526 3.1067 19 6 6.5693 -7.3687 2.3817 20 6 7.6125 -6.5593 1.9721 21 6 8.8549 -7.1092 1.7172 22 6 9.0541 -8.4684 1.8713 23 7 10.3843 -9.0572 1.5978 24 8 11.3035 -8.3440 1.2375 25 8 10.5600 -10.2547 1.7341 26 6 8.0094 -9.2786 2.2751 27 6 6.7684 -8.7280 2.5353 28 1 -0.4850 0.8401 -0.0004 29 1 0.6248 -2.5563 -0.8919 30 1 0.6242 -2.5575 0.8880 31 1 0.9460 -4.9818 -0.8938 32 1 0.9443 -4.9831 0.8862 33 1 3.3223 -5.7948 -0.8447 34 1 2.1824 -6.9373 -0.0941 35 1 7.4571 -5.4974 1.8521 36 1 9.6699 -6.4770 1.3968 37 1 8.1639 -10.3412 2.3913 38 1 5.9534 -9.3603 2.8553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815230919.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:16 Heat of formation + Delta-G solvation = -209.682005 kcal Electronic energy + Delta-G solvation = -29214.518521 eV Core-core repulsion = 24275.702255 eV Total energy + Delta-G solvation = -4938.816266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.095 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.74406 -48.75115 -43.38985 -41.95946 -40.68164 -38.88783 -37.85634 -37.79740 -34.96233 -34.21835 -32.70615 -31.96098 -29.99005 -29.02100 -27.13580 -24.68756 -24.50773 -24.35764 -23.34244 -22.40796 -20.60301 -20.18823 -19.92654 -19.40217 -19.17959 -18.72432 -18.67622 -18.27419 -17.91725 -17.08797 -16.52592 -16.45287 -16.34576 -16.30061 -15.88368 -15.45555 -15.29007 -15.18321 -15.07169 -14.79555 -14.63904 -14.40288 -14.19408 -13.79085 -13.46479 -13.27084 -12.97523 -12.89873 -12.74694 -12.72473 -12.53892 -12.44543 -12.38153 -12.12586 -11.98588 -11.90281 -11.31520 -11.05091 -10.90635 -10.62618 -10.29425 -8.33097 -6.45130 -1.56636 -0.28780 -0.08288 0.15919 0.29380 0.70921 1.40448 1.44436 1.52830 1.81253 2.07474 2.33380 2.35674 2.83316 3.00065 3.01112 3.07962 3.21322 3.28299 3.56071 3.72954 3.77539 4.02263 4.08833 4.30421 4.32222 4.44047 4.45386 4.48041 4.53960 4.71349 4.83426 4.88018 4.92111 5.16747 5.19293 5.53061 5.93572 5.97160 6.34813 6.47964 6.77455 7.26300 8.78599 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.015239 B = 0.002213 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.901184 B =12647.293228 C =13606.976168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.550 4.550 8 H 0.061 0.939 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.049 3.951 12 C 0.075 3.925 13 O -0.339 6.339 14 C 0.435 3.565 15 O -0.470 6.470 16 C 0.372 3.628 17 F -0.157 7.157 18 F -0.164 7.164 19 C -0.112 4.112 20 C -0.077 4.077 21 C -0.050 4.050 22 C -0.034 4.034 23 N 0.026 4.974 24 O -0.173 6.173 25 O -0.160 6.160 26 C -0.047 4.047 27 C -0.061 4.061 28 H 0.271 0.729 29 H -0.006 1.006 30 H -0.011 1.011 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.171 0.829 36 H 0.179 0.821 37 H 0.185 0.815 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.544 -19.995 5.942 24.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.191 1.191 7 C -0.588 4.588 8 H 0.079 0.921 9 C 0.134 3.866 10 O -0.329 6.329 11 C -0.027 4.027 12 C 0.002 3.998 13 O -0.254 6.254 14 C 0.273 3.727 15 O -0.356 6.356 16 C 0.334 3.666 17 F -0.137 7.137 18 F -0.145 7.145 19 C -0.113 4.113 20 C -0.095 4.095 21 C -0.069 4.069 22 C -0.117 4.117 23 N 0.544 4.456 24 O -0.387 6.387 25 O -0.377 6.377 26 C -0.065 4.065 27 C -0.079 4.079 28 H 0.080 0.920 29 H 0.012 0.988 30 H 0.007 0.993 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.140 0.860 35 H 0.188 0.812 36 H 0.196 0.804 37 H 0.202 0.798 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 12.961 -19.769 5.807 24.342 hybrid contribution -0.089 0.740 -0.058 0.748 sum 12.872 -19.029 5.749 23.682 Atomic orbital electron populations 1.70048 1.07638 1.28732 1.50337 1.25926 0.95975 1.03289 0.93953 0.85273 0.78153 0.76887 0.79369 1.18996 1.20044 1.19095 1.21349 0.94113 0.90896 1.52417 0.92078 1.19866 0.88523 0.84290 0.93966 1.87851 1.35534 1.14184 1.95364 1.22698 0.94434 0.83312 1.02279 1.23539 0.93246 1.00134 0.82836 1.86659 1.42610 1.53086 1.43016 1.23731 0.80441 0.79737 0.88755 1.90745 1.66596 1.36865 1.41386 1.18754 0.89274 0.76416 0.82146 1.93164 1.82613 1.75478 1.62458 1.93192 1.95989 1.35419 1.89898 1.20258 0.92069 0.96491 1.02491 1.21211 0.90276 1.02244 0.95777 1.21195 0.98964 0.92164 0.94536 1.21500 0.83412 0.95310 1.11444 1.43834 1.03242 1.00848 0.97643 1.94565 1.35302 1.59958 1.48832 1.94542 1.89445 0.98229 1.55521 1.21268 0.89561 1.02644 0.93063 1.21202 0.97830 0.92880 0.96016 0.92014 0.98812 0.99294 0.89303 0.92421 0.89672 0.85978 0.81167 0.80414 0.79806 0.80298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.51 13.29 21.45 0.28 -54.22 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.98 43.42 29.54 68.60 2.03 45.45 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 7 C -0.55 -31.99 9.43 25.60 0.24 -31.75 16 8 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 9 C 0.21 11.24 5.69 71.24 0.41 11.65 16 10 O -0.41 -18.93 10.30 -145.57 -1.50 -20.43 16 11 C 0.05 1.62 6.33 71.98 0.46 2.07 16 12 C 0.07 1.95 5.84 71.98 0.42 2.37 16 13 O -0.34 -9.82 10.02 -48.69 -0.49 -10.31 16 14 C 0.44 10.51 7.33 71.23 0.52 11.03 16 15 O -0.47 -11.62 15.98 21.95 0.35 -11.27 16 16 C 0.37 7.46 2.26 29.10 0.07 7.52 16 17 F -0.16 -2.91 16.19 44.97 0.73 -2.19 16 18 F -0.16 -3.83 16.06 44.97 0.72 -3.11 16 19 C -0.11 -1.76 4.39 -19.87 -0.09 -1.85 16 20 C -0.08 -1.08 9.40 22.27 0.21 -0.87 16 21 C -0.05 -0.67 9.56 22.27 0.21 -0.46 16 22 C -0.03 -0.53 6.85 36.37 0.25 -0.28 16 23 N 0.03 0.52 4.45 -46.46 -0.21 0.31 16 24 O -0.17 -3.82 18.45 18.89 0.35 -3.47 16 25 O -0.16 -3.36 18.45 18.89 0.35 -3.01 16 26 C -0.05 -0.54 9.56 22.27 0.21 -0.33 16 27 C -0.06 -0.72 9.36 22.27 0.21 -0.51 16 28 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 29 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 30 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 31 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 2.22 8.13 -2.38 -0.02 2.20 16 34 H 0.12 2.30 8.13 -2.38 -0.02 2.28 16 35 H 0.17 2.07 7.60 -2.92 -0.02 2.05 16 36 H 0.18 1.85 7.61 -2.91 -0.02 1.83 16 37 H 0.18 1.34 7.61 -2.91 -0.02 1.32 16 38 H 0.18 1.32 7.60 -2.91 -0.02 1.30 16 Total: -1.00 -70.46 360.90 7.32 -63.14 By element: Atomic # 1 Polarization: -1.50 SS G_CDS: 1.12 Total: -0.38 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 3.58 Total: -0.52 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.08 Total: -53.91 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -0.94 Total: -48.49 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 1.45 Total: -5.29 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -70.46 7.32 -63.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815230919.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.537 kcal (2) G-P(sol) polarization free energy of solvation -70.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds