Wall clock time and date at job start Wed Apr 1 2020 03:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35230 * 107.86620 * 179.86985 * 11 10 9 13 13 C 1.40421 * 107.86833 * 0.39274 * 12 11 10 14 14 N 1.40084 * 125.97955 * 179.72179 * 13 12 11 15 15 C 1.34777 * 119.99834 * 0.02562 * 14 13 12 16 16 O 1.21721 * 119.99846 * 359.97438 * 15 14 13 17 17 C 1.46602 * 120.00194 * 180.02562 * 15 14 13 18 18 C 1.36277 * 125.21401 * 179.71892 * 17 15 14 19 19 C 1.38454 * 113.38013 * 179.79891 * 18 17 15 20 20 C 1.48489 * 122.78593 * 180.24162 * 19 18 17 21 21 N 1.34044 * 126.66899 * 359.97438 * 20 19 18 22 22 N 1.28989 * 107.26115 * 179.83363 * 21 20 19 23 23 N 1.28729 * 108.94649 * 0.43628 * 22 21 20 24 24 H 0.97001 * 125.34019 * 179.75762 * 23 22 21 25 25 N 1.28866 * 109.31850 * 359.71788 * 23 22 21 26 26 C 1.35918 * 114.43298 * 0.48871 * 19 18 17 27 27 S 1.70575 * 110.79082 * 359.73119 * 26 19 18 28 28 N 1.31237 * 108.04634 * 359.75856 * 13 12 11 29 29 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 31 31 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 32 32 H 1.08000 * 126.06298 * 0.02562 * 11 10 9 33 33 H 1.08008 * 126.06619 * 180.14781 * 12 11 10 34 34 H 0.96998 * 120.00165 * 180.02562 * 14 13 12 35 35 H 1.07996 * 123.30994 * 0.02562 * 18 17 15 36 36 H 1.07994 * 124.60698 * 179.70678 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2630 -5.4436 0.5307 13 6 3.8671 -4.9130 -0.6205 14 7 4.9606 -5.4613 -1.3032 15 6 5.5271 -6.6020 -0.8624 16 8 5.0889 -7.1555 0.1292 17 6 6.6718 -7.1756 -1.5765 18 6 7.3272 -8.3168 -1.2225 19 6 8.3719 -8.6367 -2.0730 20 6 9.2221 -9.8395 -1.8851 21 7 9.1125 -10.7530 -0.9103 22 7 10.0333 -11.6347 -1.1066 23 7 10.7119 -11.3051 -2.1497 24 1 11.4639 -11.8010 -2.5097 25 7 10.2351 -10.2134 -2.6411 26 6 8.5579 -7.7558 -3.0911 27 16 7.4137 -6.4929 -3.0157 28 7 3.2287 -3.8132 -0.9445 29 1 -0.4850 -0.8400 0.0004 30 1 0.6281 -2.5591 0.8866 31 1 0.6207 -2.5548 -0.8933 32 1 1.5908 -4.7507 1.7300 33 1 3.5585 -6.3459 1.0455 34 1 5.3100 -5.0200 -2.0932 35 1 7.0560 -8.9148 -0.3651 36 1 9.3260 -7.8432 -3.8452 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822811104.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:07 Heat of formation + Delta-G solvation = 209.402221 kcal Electronic energy + Delta-G solvation = -25028.425414 eV Core-core repulsion = 21065.809564 eV Total energy + Delta-G solvation = -3962.615850 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.86043 -40.83022 -39.56960 -38.15616 -34.94670 -34.65162 -33.72590 -33.44345 -31.19414 -30.01390 -29.42536 -26.70290 -26.19160 -24.76626 -24.39134 -22.94022 -21.77267 -20.83683 -20.09044 -19.90889 -19.19242 -18.26316 -17.55088 -17.20602 -16.83260 -16.40369 -15.81327 -15.44945 -15.09759 -14.46433 -14.28014 -14.06317 -13.79647 -13.56109 -13.43532 -13.33345 -13.16677 -12.57860 -12.49227 -12.28570 -11.86615 -11.77541 -11.56579 -11.49051 -11.30715 -11.18194 -10.83494 -10.55005 -10.20052 -10.16826 -9.80289 -9.35080 -9.02592 -8.90502 -8.59186 -8.25956 -7.57642 -6.59092 -4.33307 -0.06185 0.62653 0.91821 1.15632 1.28318 1.83078 2.31080 2.54911 2.62033 2.96002 3.33069 3.37541 3.38934 3.57759 3.65401 3.70952 3.82999 4.39923 4.44112 4.62420 4.81834 4.94022 5.03315 5.14543 5.35517 5.44860 5.61052 5.67315 5.77357 5.94129 6.09572 6.36666 6.44867 6.56031 6.72931 7.22550 7.40226 7.66709 7.73564 7.79926 8.03505 8.32604 8.48874 8.59964 9.34856 10.78513 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.025945 B = 0.001907 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.936541 B =14676.240888 C =15392.146505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.023 3.977 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.608 4.608 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.315 5.315 11 C 0.052 3.948 12 C -0.283 4.283 13 C 0.259 3.741 14 N -0.625 5.625 15 C 0.598 3.402 16 O -0.499 6.499 17 C -0.264 4.264 18 C -0.019 4.019 19 C -0.047 4.047 20 C 0.241 3.759 21 N -0.262 5.262 22 N -0.047 5.047 23 N -0.228 5.228 24 H 0.476 0.524 25 N -0.295 5.295 26 C -0.196 4.196 27 S 0.264 5.736 28 N -0.299 5.299 29 H 0.267 0.733 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.169 0.831 33 H 0.163 0.837 34 H 0.408 0.592 35 H 0.169 0.831 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.906 -20.267 -7.843 30.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.904 3.096 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.647 4.647 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.097 5.097 11 C -0.097 4.097 12 C -0.314 4.314 13 C 0.006 3.994 14 N -0.272 5.272 15 C 0.383 3.617 16 O -0.374 6.374 17 C -0.385 4.385 18 C -0.052 4.052 19 C -0.064 4.064 20 C -0.040 4.040 21 N -0.136 5.136 22 N -0.042 5.042 23 N -0.074 5.074 24 H 0.330 0.670 25 N -0.147 5.147 26 C -0.338 4.338 27 S 0.533 5.467 28 N -0.130 5.130 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.187 0.813 33 H 0.180 0.820 34 H 0.243 0.757 35 H 0.186 0.814 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 20.109 -17.195 -8.528 27.799 hybrid contribution 1.219 -3.383 0.462 3.625 sum 21.328 -20.578 -8.066 30.715 Atomic orbital electron populations 1.70853 1.06773 1.30438 1.45889 1.25924 0.96315 1.02810 0.93130 0.83419 0.74810 0.74559 0.76849 1.20533 1.21229 1.21123 1.22097 0.95386 0.90410 1.56763 0.91813 1.19786 0.86294 0.82790 0.98075 1.48807 1.23249 1.19520 1.18117 1.22575 1.00413 0.90049 0.96690 1.21543 1.02115 1.06341 1.01397 1.18981 0.91321 0.94394 0.94731 1.42189 1.30231 1.24611 1.30208 1.16686 0.81436 0.79755 0.83839 1.90801 1.61791 1.60097 1.24672 1.24265 1.05634 1.03882 1.04701 1.20532 0.91379 0.94236 0.99013 1.16150 0.98171 0.93419 0.98663 1.23046 0.93873 0.96814 0.90309 1.76168 1.15161 1.01022 1.21204 1.78960 1.01697 1.19919 1.03625 1.47717 1.25797 1.15867 1.18009 0.66978 1.74898 1.13090 1.01996 1.24766 1.25789 1.05487 0.99392 1.03094 1.83253 1.20694 1.21679 1.21098 1.77360 1.03492 1.16036 1.16076 0.92267 0.93532 0.94681 0.81336 0.81969 0.75684 0.81402 0.80090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 13.65 55.43 0.76 -25.35 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 3 Si 1.08 24.69 29.90 -169.99 -5.08 19.60 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.61 -16.93 9.24 -34.44 -0.32 -17.25 16 8 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 9 C 0.25 6.21 5.57 -5.19 -0.03 6.19 16 10 N -0.32 -7.27 3.67 -62.56 -0.23 -7.50 16 11 C 0.05 1.03 11.43 -17.24 -0.20 0.84 16 12 C -0.28 -5.53 9.60 -39.83 -0.38 -5.91 16 13 C 0.26 5.14 8.11 -154.44 -1.25 3.89 16 14 N -0.63 -9.68 5.44 -12.34 -0.07 -9.75 16 15 C 0.60 8.73 7.75 -12.89 -0.10 8.63 16 16 O -0.50 -8.68 13.94 5.17 0.07 -8.61 16 17 C -0.26 -2.88 6.42 -36.92 -0.24 -3.12 16 18 C -0.02 -0.20 9.75 -40.21 -0.39 -0.59 16 19 C -0.05 -0.43 5.81 -106.42 -0.62 -1.05 16 20 C 0.24 2.33 8.03 -156.29 -1.25 1.08 16 21 N -0.26 -2.83 12.46 32.16 0.40 -2.43 16 22 N -0.05 -0.40 13.47 60.35 0.81 0.41 16 23 N -0.23 -1.26 7.90 60.35 0.48 -0.78 16 24 H 0.48 0.26 8.96 -340.37 -3.05 -2.79 16 25 N -0.30 -2.28 12.30 32.18 0.40 -1.89 16 26 C -0.20 -1.38 10.72 29.90 0.32 -1.06 16 27 S 0.26 1.94 22.11 -107.50 -2.38 -0.43 16 28 N -0.30 -6.82 12.42 31.43 0.39 -6.43 16 29 H 0.27 7.54 7.22 -40.82 -0.29 7.24 16 30 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 31 H 0.04 0.91 8.00 -51.93 -0.42 0.50 16 32 H 0.17 2.69 8.06 -52.49 -0.42 2.27 16 33 H 0.16 3.05 5.91 -52.48 -0.31 2.74 16 34 H 0.41 5.19 7.91 -40.82 -0.32 4.87 16 35 H 0.17 1.84 8.05 -52.49 -0.42 1.42 16 36 H 0.18 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 344.39 15.07 5.19 5.19 Total: -1.00 -35.61 344.39 -9.10 -44.71 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.28 Total: 1.07 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -4.56 Total: -7.82 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 2.94 Total: -53.71 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.07 Total: -8.61 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.08 Total: 19.60 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.38 Total: -0.43 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.61 -9.10 -44.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822811104.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 254.115 kcal (2) G-P(sol) polarization free energy of solvation -35.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 218.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 209.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds