Wall clock time and date at job start Wed Apr 1 2020 04:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47468 * 2 1 4 4 N 1.46500 * 109.46841 * 120.00713 * 2 1 3 5 5 C 1.46501 * 119.99677 * 299.99215 * 4 2 1 6 6 C 1.50692 * 109.47392 * 276.01237 * 5 4 2 7 7 H 1.08000 * 120.00031 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00436 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99374 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00322 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46970 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46639 * 120.00516 * 10 8 6 13 13 H 1.48503 * 109.47230 * 240.00273 * 10 8 6 14 14 S 1.65600 * 120.00219 * 119.99755 * 4 2 1 15 15 O 1.42097 * 106.40269 * 25.97056 * 14 4 2 16 16 O 1.42107 * 106.39916 * 158.88874 * 14 4 2 17 17 C 1.76197 * 107.21780 * 272.42969 * 14 4 2 18 18 C 1.37974 * 120.05299 * 349.70809 * 17 14 4 19 19 C 1.38310 * 120.18091 * 179.74591 * 18 17 14 20 20 C 1.38596 * 120.27655 * 0.55526 * 19 18 17 21 21 F 1.35095 * 119.95411 * 179.72207 * 20 19 18 22 22 C 1.38163 * 120.09695 * 359.70318 * 20 19 18 23 23 C 1.39608 * 120.05105 * 169.98518 * 17 14 4 24 24 C 1.47732 * 120.13613 * 0.02562 * 23 17 14 25 25 O 1.21479 * 120.00143 * 6.43010 * 24 23 17 26 26 O 1.34707 * 120.00179 * 186.43895 * 24 23 17 27 27 H 1.08998 * 109.47152 * 299.99839 * 1 2 3 28 28 H 1.09005 * 109.46803 * 59.99351 * 1 2 3 29 29 H 1.08992 * 109.47496 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46618 * 240.00094 * 2 1 3 31 31 H 1.09003 * 109.47115 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46991 * 300.00131 * 3 2 1 33 33 H 1.08998 * 109.46802 * 59.99947 * 3 2 1 34 34 H 1.09003 * 109.47167 * 36.01382 * 5 4 2 35 35 H 1.09006 * 109.47045 * 156.01123 * 5 4 2 36 36 H 0.97005 * 119.99777 * 180.02562 * 9 8 6 37 37 H 1.08005 * 119.90482 * 0.02745 * 18 17 14 38 38 H 1.08001 * 119.85770 * 180.25914 * 19 18 17 39 39 H 1.07995 * 120.08788 * 180.02562 * 22 20 19 40 40 H 0.96701 * 117.00562 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 1.6644 -0.1902 2.5267 6 6 2.6188 0.9073 2.9208 7 1 3.4096 1.2029 2.2472 8 6 2.4818 1.5351 4.1407 9 7 1.5185 1.1755 4.9606 10 14 3.6653 2.8951 4.6295 11 1 4.6513 3.1085 3.5398 12 1 2.9072 4.1505 4.8634 13 1 4.3778 2.5080 5.8736 14 16 2.9703 -2.0372 1.0441 15 8 3.6235 -1.9270 -0.2130 16 8 3.6691 -2.1754 2.2737 17 6 1.8933 -3.4267 0.9250 18 6 0.5451 -3.2797 1.1789 19 6 -0.3035 -4.3675 1.0811 20 6 0.1955 -5.6144 0.7389 21 9 -0.6384 -6.6736 0.6507 22 6 1.5444 -5.7757 0.4874 23 6 2.4038 -4.6792 0.5793 24 6 3.8475 -4.8440 0.3128 25 8 4.6105 -3.9189 0.5071 26 8 4.3179 -6.0201 -0.1457 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 0.6474 0.2016 2.5089 35 1 1.7277 -1.0037 3.2496 36 1 1.4219 1.6173 5.8188 37 1 0.1507 -2.3116 1.4504 38 1 -1.3586 -4.2456 1.2769 39 1 1.9329 -6.7473 0.2204 40 1 5.2697 -6.0800 -0.3056 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833497069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:51 Heat of formation + Delta-G solvation = -170.521628 kcal Electronic energy + Delta-G solvation = -29681.753585 eV Core-core repulsion = 25310.848617 eV Total energy + Delta-G solvation = -4370.904968 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.36141 -40.75761 -38.80181 -37.03147 -36.54361 -36.30548 -34.95523 -32.77136 -32.02708 -31.13355 -30.63576 -27.01727 -26.58593 -25.38955 -23.51796 -22.82676 -21.93260 -20.31367 -18.91537 -18.51636 -17.98618 -17.38224 -17.09250 -16.41801 -16.21988 -16.14765 -16.09788 -15.77184 -15.26535 -14.72777 -14.43233 -13.93910 -13.82890 -13.62189 -13.58704 -13.30495 -13.09107 -12.81488 -12.32375 -12.20054 -11.93811 -11.86098 -11.62879 -11.50993 -11.28253 -11.05576 -11.04782 -10.98888 -10.84303 -10.79293 -10.57374 -10.47356 -10.27382 -9.83295 -9.60451 -9.55396 -9.41459 -8.42861 -8.13937 -6.05717 -4.07179 0.01260 0.57584 0.96194 2.13788 2.54848 3.08591 3.32324 3.40884 3.45732 3.56343 3.74034 4.16801 4.36735 4.45442 4.48879 4.75563 4.95449 5.13391 5.23424 5.25472 5.32365 5.32602 5.46637 5.57785 5.63457 5.67097 5.70769 5.93607 6.12992 6.19773 6.22585 6.30300 6.43850 6.54308 6.75064 7.15002 7.21555 7.38471 7.51971 7.61310 7.92928 8.21490 8.94854 9.56850 11.03316 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013836 B = 0.004325 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.268561 B = 6472.123013 C = 6971.840001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.146 3.854 3 C -0.153 4.153 4 N -0.984 5.984 5 C 0.248 3.752 6 C -0.520 4.520 7 H 0.065 0.935 8 C 0.062 3.938 9 N -0.897 5.897 10 Si 0.893 3.107 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.283 1.283 14 S 2.694 3.306 15 O -0.955 6.955 16 O -0.925 6.925 17 C -0.626 4.626 18 C -0.011 4.011 19 C -0.134 4.134 20 C 0.128 3.872 21 F -0.128 7.128 22 C -0.115 4.115 23 C -0.010 4.010 24 C 0.513 3.487 25 O -0.475 6.475 26 O -0.503 6.503 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.262 0.738 37 H 0.163 0.837 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.846 -12.532 -11.141 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.040 3.960 3 C -0.212 4.212 4 N -0.826 5.826 5 C 0.127 3.873 6 C -0.560 4.560 7 H 0.084 0.916 8 C -0.140 4.140 9 N -0.536 5.536 10 Si 0.721 3.279 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.209 1.209 14 S 2.777 3.223 15 O -0.945 6.945 16 O -0.915 6.915 17 C -0.706 4.706 18 C -0.030 4.030 19 C -0.153 4.153 20 C 0.109 3.891 21 F -0.107 7.107 22 C -0.135 4.135 23 C -0.012 4.012 24 C 0.355 3.645 25 O -0.363 6.363 26 O -0.315 6.315 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.181 0.819 38 H 0.171 0.829 39 H 0.176 0.824 40 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -4.292 -12.371 -10.858 17.010 hybrid contribution 0.328 -0.016 0.331 0.466 sum -3.963 -12.386 -10.527 16.732 Atomic orbital electron populations 1.22271 0.95990 1.01359 1.02924 1.20715 0.93689 0.95070 0.86576 1.22132 1.01611 0.95179 1.02272 1.57847 1.70431 1.40255 1.14092 1.19186 0.97270 0.95513 0.75358 1.21537 1.14346 1.18040 1.02056 0.91645 1.24907 0.95581 0.97413 0.96099 1.69918 1.31810 1.42205 1.09673 0.86509 0.81142 0.81465 0.78777 1.19564 1.21070 1.20901 1.02567 0.73174 0.72214 0.74354 1.93509 1.70408 1.86104 1.44487 1.93602 1.67748 1.85488 1.44693 1.32110 1.11702 1.17759 1.08988 1.21022 0.90316 1.00106 0.91521 1.21590 1.02164 0.91184 1.00407 1.17670 0.87700 0.84236 0.99511 1.91556 1.70865 1.54837 1.93401 1.21436 0.91549 1.00216 1.00261 1.18230 0.89734 0.92898 1.00339 1.20769 0.88792 0.80547 0.74345 1.91003 1.58183 1.40063 1.47012 1.84460 1.33258 1.35742 1.78048 0.90818 0.92045 0.93293 0.90023 0.92570 0.93442 0.89536 0.94025 0.94149 0.92815 0.81938 0.82923 0.82375 0.71772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 8.93 37.16 0.33 -1.90 16 2 C 0.15 2.45 3.23 -67.93 -0.22 2.23 16 3 C -0.15 -2.65 8.16 37.16 0.30 -2.35 16 4 N -0.98 -19.70 1.70 -108.57 -0.19 -19.89 16 5 C 0.25 5.81 4.47 -5.20 -0.02 5.78 16 6 C -0.52 -13.86 7.48 -34.44 -0.26 -14.12 16 7 H 0.07 1.76 6.97 -52.49 -0.37 1.39 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.90 -25.26 13.29 55.43 0.74 -24.53 16 10 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 S 2.69 56.72 3.93 -107.50 -0.42 56.30 16 15 O -0.96 -21.08 14.51 -66.88 -0.97 -22.05 16 16 O -0.93 -23.34 16.14 -65.09 -1.05 -24.39 16 17 C -0.63 -10.44 5.86 -39.17 -0.23 -10.67 16 18 C -0.01 -0.15 9.22 -39.65 -0.37 -0.52 16 19 C -0.13 -1.48 10.02 -39.42 -0.39 -1.87 16 20 C 0.13 1.44 7.29 -39.48 -0.29 1.15 16 21 F -0.13 -1.35 17.26 2.25 0.04 -1.31 16 22 C -0.12 -1.36 9.59 -39.10 -0.38 -1.73 16 23 C -0.01 -0.15 5.87 -104.99 -0.62 -0.76 16 24 C 0.51 7.89 8.13 34.61 0.28 8.18 16 25 O -0.48 -9.30 12.64 -29.73 -0.38 -9.68 16 26 O -0.50 -5.10 12.70 -40.51 -0.51 -5.61 16 27 H 0.07 1.08 6.70 -51.93 -0.35 0.73 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.56 6.52 -51.93 -0.34 0.22 16 30 H 0.08 1.29 6.98 -51.92 -0.36 0.93 16 31 H 0.06 1.05 7.89 -51.93 -0.41 0.64 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.66 6.60 -51.93 -0.34 1.32 16 34 H 0.04 0.95 6.46 -51.93 -0.34 0.61 16 35 H 0.04 1.02 7.51 -51.93 -0.39 0.63 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.16 2.09 5.54 -52.48 -0.29 1.80 16 38 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 39 H 0.16 1.44 7.63 -52.49 -0.40 1.04 16 40 H 0.42 2.29 9.11 45.56 0.42 2.70 16 LS Contribution 347.30 15.07 5.23 5.23 Total: -1.00 -35.22 347.30 -8.05 -43.27 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -3.57 Total: 1.23 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -1.95 Total: -14.98 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.55 Total: -44.41 kcal Atomic # 8 Polarization: -58.83 SS G_CDS: -2.91 Total: -61.74 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 56.72 SS G_CDS: -0.42 Total: 56.30 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.22 -8.05 -43.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833497069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.250 kcal (2) G-P(sol) polarization free energy of solvation -35.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds