Wall clock time and date at job start Wed Apr 1 2020 04:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47454 * 2 1 4 4 O 1.42895 * 109.47266 * 120.00275 * 2 1 3 5 5 C 1.42896 * 113.99925 * 269.99948 * 4 2 1 6 6 C 1.50700 * 109.47153 * 179.97438 * 5 4 2 7 7 C 1.38247 * 119.97488 * 269.72843 * 6 5 4 8 8 C 1.38205 * 120.02319 * 179.72789 * 7 6 5 9 9 C 1.38457 * 119.97361 * 0.56403 * 8 7 6 10 10 F 1.35097 * 120.02232 * 179.68410 * 9 8 7 11 11 C 1.38457 * 119.95029 * 359.70809 * 9 8 7 12 12 C 1.38198 * 119.97611 * 0.02562 * 11 9 8 13 13 C 1.50706 * 109.46980 * 240.00430 * 2 1 3 14 14 O 1.21283 * 119.99503 * 244.99887 * 13 2 1 15 15 N 1.34773 * 120.00081 * 64.72614 * 13 2 1 16 16 S 1.65598 * 119.99646 * 180.02562 * 15 13 2 17 17 O 1.42105 * 104.27668 * 181.06887 * 16 15 13 18 18 O 1.42094 * 104.28158 * 308.92572 * 16 15 13 19 19 C 1.81404 * 104.45244 * 64.99884 * 16 15 13 20 20 C 1.50694 * 109.47457 * 179.97438 * 19 16 15 21 21 H 1.08008 * 119.99581 * 359.97438 * 20 19 16 22 22 C 1.37875 * 120.00234 * 179.97438 * 20 19 16 23 23 N 1.31512 * 120.00241 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00070 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46972 * 60.00132 * 24 22 20 26 26 H 1.48497 * 109.47333 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47299 * 300.00414 * 24 22 20 28 28 H 1.08999 * 109.46938 * 59.99415 * 1 2 3 29 29 H 1.08995 * 109.47123 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47253 * 300.00217 * 1 2 3 31 31 H 1.08994 * 109.47229 * 299.99576 * 5 4 2 32 32 H 1.08995 * 109.47387 * 60.00009 * 5 4 2 33 33 H 1.07998 * 119.98704 * 359.97438 * 7 6 5 34 34 H 1.07998 * 120.00801 * 180.24852 * 8 7 6 35 35 H 1.07999 * 120.01330 * 179.97438 * 11 9 8 36 36 H 1.07994 * 119.98950 * 180.02562 * 12 11 9 37 37 H 0.96998 * 120.00525 * 359.97438 * 15 13 2 38 38 H 1.09001 * 109.46803 * 300.00163 * 19 16 15 39 39 H 1.09002 * 109.46971 * 59.99627 * 19 16 15 40 40 H 0.96993 * 120.00406 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2001 0.1828 2.2940 6 6 2.7003 -0.6285 3.4612 7 6 1.8005 -1.1949 4.3449 8 6 2.2579 -1.9439 5.4125 9 6 3.6183 -2.1171 5.6036 10 9 4.0667 -2.8438 6.6505 11 6 4.5187 -1.5447 4.7211 12 6 4.0588 -0.8008 3.6511 13 6 2.0323 -0.7103 -1.2306 14 8 2.6530 -1.7466 -1.1216 15 7 1.7871 -0.1969 -2.4523 16 16 2.3386 -0.9779 -3.8044 17 8 1.9232 -0.1493 -4.8816 18 8 3.7169 -1.2022 -3.5421 19 6 1.4303 -2.5481 -3.8224 20 6 1.8503 -3.3577 -5.0221 21 1 2.5893 -2.9665 -5.7056 22 6 1.2910 -4.5977 -5.2470 23 7 0.3908 -5.0738 -4.4150 24 14 1.8111 -5.6009 -6.7345 25 1 3.2693 -5.8726 -6.6631 26 1 1.0677 -6.8863 -6.7492 27 1 1.5094 -4.8410 -7.9742 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.9320 0.9512 2.0450 32 1 1.2539 0.6546 2.5588 33 1 0.7396 -1.0553 4.1985 34 1 1.5547 -2.3896 6.1004 35 1 5.5800 -1.6788 4.8694 36 1 4.7609 -0.3545 2.9625 37 1 1.2870 0.6296 -2.5397 38 1 1.6507 -3.1057 -2.9121 39 1 0.3601 -2.3482 -3.8759 40 1 -0.0029 -5.9460 -4.5734 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835409730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:03 Heat of formation + Delta-G solvation = -206.285055 kcal Electronic energy + Delta-G solvation = -27338.244424 eV Core-core repulsion = 22965.788637 eV Total energy + Delta-G solvation = -4372.455787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.94575 -41.40439 -40.21420 -38.56233 -38.05334 -37.05513 -35.71585 -35.42282 -33.21089 -32.12021 -31.50226 -31.10198 -27.01680 -25.85698 -25.42882 -24.04799 -22.51706 -22.38897 -20.87618 -19.37202 -18.94341 -18.66966 -18.42141 -17.79426 -17.47594 -17.32050 -16.97888 -16.63577 -16.60512 -16.30018 -16.13068 -15.84892 -15.46867 -15.00787 -14.52092 -14.49159 -14.28280 -14.12805 -14.01944 -13.67345 -13.53833 -13.49018 -13.24070 -13.20441 -13.10490 -13.06278 -12.73487 -12.65145 -12.54097 -12.11221 -12.04819 -11.97560 -11.86487 -11.26053 -11.07471 -10.79355 -10.59754 -10.07974 -9.68157 -8.43072 -6.62417 -0.75470 0.02346 0.26497 1.05280 1.36657 1.41144 1.48896 1.52561 2.27866 2.35140 2.74213 2.90139 2.91527 3.22974 3.26453 3.39889 3.73044 3.79866 3.90196 3.96738 4.00368 4.10870 4.21324 4.28390 4.49434 4.61778 4.65425 4.75175 4.76944 4.85768 4.96030 4.98786 5.13022 5.22621 5.28104 5.29397 5.50975 5.65457 5.71186 5.88509 6.11158 6.46728 6.54213 7.09386 8.69674 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013756 B = 0.002499 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.932815 B =11200.871137 C =12205.426979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.078 3.922 3 H 0.143 0.857 4 O -0.385 6.385 5 C 0.095 3.905 6 C -0.112 4.112 7 C -0.070 4.070 8 C -0.163 4.163 9 C 0.081 3.919 10 F -0.149 7.149 11 C -0.166 4.166 12 C -0.078 4.078 13 C 0.524 3.476 14 O -0.522 6.522 15 N -1.037 6.037 16 S 2.602 3.398 17 O -0.975 6.975 18 O -0.987 6.987 19 C -0.422 4.422 20 C -0.569 4.569 21 H 0.068 0.932 22 C 0.025 3.975 23 N -0.908 5.908 24 Si 0.966 3.034 25 H -0.266 1.266 26 H -0.269 1.269 27 H -0.256 1.256 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.108 0.892 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.159 0.841 34 H 0.153 0.847 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.449 0.551 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.192 15.531 19.034 24.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.016 3.984 3 H 0.160 0.840 4 O -0.304 6.304 5 C 0.020 3.980 6 C -0.113 4.113 7 C -0.087 4.087 8 C -0.181 4.181 9 C 0.062 3.938 10 F -0.128 7.128 11 C -0.185 4.185 12 C -0.096 4.096 13 C 0.311 3.689 14 O -0.394 6.394 15 N -0.804 5.804 16 S 2.702 3.298 17 O -0.965 6.965 18 O -0.977 6.977 19 C -0.557 4.557 20 C -0.608 4.608 21 H 0.087 0.913 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.788 3.212 25 H -0.191 1.191 26 H -0.194 1.194 27 H -0.180 1.180 28 H 0.117 0.883 29 H 0.071 0.929 30 H 0.126 0.874 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.176 0.824 34 H 0.171 0.829 35 H 0.165 0.835 36 H 0.162 0.838 37 H 0.289 0.711 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.139 14.800 18.670 23.852 hybrid contribution -0.198 -0.936 -0.186 0.975 sum -1.337 13.864 18.484 23.145 Atomic orbital electron populations 1.22358 0.90563 1.03955 1.06275 1.22171 0.96946 0.97224 0.82100 0.84019 1.88132 1.86934 1.35764 1.19597 1.21695 1.02272 0.91222 0.82847 1.19914 0.93640 1.01036 0.96680 1.21253 1.01238 0.93966 0.92291 1.21412 0.93666 1.02041 1.00994 1.18068 0.93705 0.95311 0.86724 1.91475 1.90106 1.75588 1.55646 1.21357 1.00877 1.00354 0.95888 1.21221 0.95870 0.96450 0.96062 1.21492 0.76979 0.84737 0.85723 1.90927 1.37917 1.24076 1.86454 1.54886 1.66188 1.38357 1.20999 1.05368 0.75076 0.77060 0.72333 1.93505 1.83865 1.66898 1.52269 1.93487 1.33468 1.86756 1.83964 1.27663 1.09056 1.13784 1.05166 1.20706 1.26721 1.04487 1.08884 0.91347 1.25880 0.93964 0.98041 0.99996 1.70030 1.27213 1.19369 1.37836 0.85477 0.79089 0.77917 0.78707 1.19061 1.19361 1.18016 0.88314 0.92910 0.87370 0.90029 0.88468 0.82377 0.82923 0.83541 0.83750 0.71059 0.90762 0.89372 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 9.48 71.98 0.68 -1.62 16 2 C 0.08 1.47 3.13 29.85 0.09 1.56 16 3 H 0.14 1.31 7.79 -2.39 -0.02 1.29 16 4 O -0.38 -8.92 9.51 -129.99 -1.24 -10.16 16 5 C 0.09 1.31 5.87 71.24 0.42 1.73 16 6 C -0.11 -1.94 5.51 -19.86 -0.11 -2.05 16 7 C -0.07 -1.08 9.70 22.26 0.22 -0.87 16 8 C -0.16 -2.77 10.03 22.31 0.22 -2.55 16 9 C 0.08 1.64 7.30 22.37 0.16 1.81 16 10 F -0.15 -3.29 17.27 44.97 0.78 -2.51 16 11 C -0.17 -3.16 10.03 22.31 0.22 -2.93 16 12 C -0.08 -1.43 9.70 22.26 0.22 -1.21 16 13 C 0.52 16.37 6.92 87.66 0.61 16.97 16 14 O -0.52 -22.89 14.60 24.18 0.35 -22.54 16 15 N -1.04 -29.82 5.56 -173.53 -0.97 -30.79 16 16 S 2.60 110.25 5.03 -56.49 -0.28 109.96 16 17 O -0.97 -42.21 18.08 -127.65 -2.31 -44.52 16 18 O -0.99 -49.25 17.04 -120.74 -2.06 -51.30 16 19 C -0.42 -21.52 5.64 71.23 0.40 -21.12 16 20 C -0.57 -32.62 9.13 25.60 0.23 -32.38 16 21 H 0.07 3.80 7.71 -2.91 -0.02 3.78 16 22 C 0.02 1.39 5.46 84.65 0.46 1.86 16 23 N -0.91 -53.12 13.29 21.45 0.28 -52.84 16 24 Si 0.97 43.45 29.54 68.60 2.03 45.48 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 28 H 0.10 0.87 7.90 -2.39 -0.02 0.85 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.11 0.72 7.87 -2.39 -0.02 0.70 16 31 H 0.08 0.81 8.03 -2.39 -0.02 0.79 16 32 H 0.10 0.68 7.81 -2.39 -0.02 0.66 16 33 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 35 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 36 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.45 7.74 8.55 -96.75 -0.83 6.92 16 38 H 0.07 4.11 7.18 -2.39 -0.02 4.09 16 39 H 0.09 4.29 8.14 -2.39 -0.02 4.28 16 40 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -86.17 368.79 0.68 -85.49 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.26 Total: 14.53 kcal Atomic # 6 Polarization: -44.63 SS G_CDS: 3.83 Total: -40.80 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -0.68 Total: -83.62 kcal Atomic # 8 Polarization: -123.28 SS G_CDS: -5.25 Total: -128.52 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.78 Total: -2.51 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 110.25 SS G_CDS: -0.28 Total: 109.96 kcal Total: -86.17 0.68 -85.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835409730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.796 kcal (2) G-P(sol) polarization free energy of solvation -86.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds