Wall clock time and date at job start Wed Apr 1 2020 04:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46907 * 2 1 4 4 H 1.08996 * 109.47527 * 54.99785 * 3 2 1 5 5 O 1.42902 * 109.47057 * 294.99580 * 3 2 1 6 6 C 1.35960 * 116.99644 * 99.40061 * 5 3 2 7 7 C 1.38659 * 120.06449 * 354.33675 * 6 5 3 8 8 C 1.38183 * 119.96970 * 179.97438 * 7 6 5 9 9 C 1.38266 * 120.09246 * 0.02562 * 8 7 6 10 10 C 1.38253 * 120.12715 * 359.97438 * 9 8 7 11 11 C 1.38332 * 120.03266 * 0.25646 * 10 9 8 12 12 F 1.35090 * 120.04976 * 179.72390 * 11 10 9 13 13 C 1.50704 * 109.46862 * 175.00098 * 3 2 1 14 14 O 1.21279 * 119.99972 * 120.00111 * 13 3 2 15 15 N 1.34776 * 120.00043 * 299.99216 * 13 3 2 16 16 S 1.65597 * 120.00250 * 180.02562 * 15 13 3 17 17 O 1.42093 * 104.27725 * 181.07469 * 16 15 13 18 18 O 1.42102 * 104.27628 * 308.93264 * 16 15 13 19 19 C 1.81404 * 104.44887 * 65.00232 * 16 15 13 20 20 C 1.50696 * 109.47091 * 180.02562 * 19 16 15 21 21 H 1.08005 * 120.00134 * 0.02562 * 20 19 16 22 22 C 1.37876 * 119.99982 * 180.02562 * 20 19 16 23 23 N 1.31511 * 120.00043 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99955 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46726 * 90.00360 * 24 22 20 26 26 H 1.48502 * 109.47089 * 210.00170 * 24 22 20 27 27 H 1.48504 * 109.47141 * 330.00297 * 24 22 20 28 28 H 1.08999 * 109.47177 * 300.00349 * 1 2 3 29 29 H 1.09005 * 109.47016 * 60.00224 * 1 2 3 30 30 H 1.08998 * 109.47476 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47177 * 239.99651 * 2 1 3 32 32 H 1.08995 * 109.47058 * 119.99748 * 2 1 3 33 33 H 1.07994 * 120.01686 * 359.97438 * 7 6 5 34 34 H 1.07999 * 119.95136 * 179.97438 * 8 7 6 35 35 H 1.08000 * 119.93126 * 179.97438 * 9 8 7 36 36 H 1.07996 * 119.98408 * 179.97438 * 10 9 8 37 37 H 0.97004 * 119.99727 * 0.02562 * 15 13 3 38 38 H 1.08997 * 109.47030 * 300.00445 * 19 16 15 39 39 H 1.08997 * 109.46716 * 59.99840 * 19 16 15 40 40 H 0.97001 * 120.00196 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 8 1.6619 2.0814 -1.2211 6 6 0.5658 2.8849 -1.1837 7 6 -0.1989 2.9634 -0.0297 8 6 -1.3122 3.7811 0.0064 9 6 -1.6652 4.5210 -1.1070 10 6 -0.9056 4.4458 -2.2597 11 6 0.2073 3.6252 -2.3031 12 9 0.9466 3.5472 -3.4310 13 6 3.5419 1.4443 0.1238 14 8 4.2216 1.9436 -0.7477 15 7 4.1297 0.8913 1.2032 16 16 5.7801 0.8938 1.3396 17 8 6.0315 0.2180 2.5640 18 8 6.2347 0.3623 0.1026 19 6 6.2201 2.6481 1.4787 20 6 7.7154 2.7821 1.6094 21 1 8.3388 1.9001 1.6084 22 6 8.2877 4.0307 1.7303 23 7 9.5926 4.1476 1.8438 24 14 7.2096 5.5561 1.7313 25 1 6.8091 5.8782 3.1245 26 1 7.9665 6.6976 1.1574 27 1 5.9961 5.3053 0.9128 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.0754 2.3856 0.8405 34 1 -1.9079 3.8416 0.9052 35 1 -2.5361 5.1590 -1.0761 36 1 -1.1836 5.0244 -3.1281 37 1 3.5860 0.4917 1.9001 38 1 5.8846 3.1786 0.5877 39 1 5.7384 3.0748 2.3585 40 1 9.9953 5.0260 1.9292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835411324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:35 Heat of formation + Delta-G solvation = -159.875532 kcal Electronic energy + Delta-G solvation = -28540.884808 eV Core-core repulsion = 24170.441489 eV Total energy + Delta-G solvation = -4370.443319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.93742 -41.13956 -39.61447 -37.75809 -36.44677 -35.37718 -34.83617 -33.64625 -33.28908 -31.09517 -30.37501 -29.86376 -28.01100 -23.88696 -23.18055 -22.86550 -22.80774 -21.04100 -19.57112 -19.03988 -18.15095 -17.58745 -17.28802 -16.76755 -16.56004 -16.40181 -15.91378 -15.58707 -15.26319 -15.12141 -14.96064 -14.74480 -14.49059 -14.21200 -14.17043 -13.45091 -13.18090 -12.83305 -12.75215 -12.65944 -12.48703 -12.32892 -12.21403 -12.07086 -11.79144 -11.71168 -11.50526 -11.44285 -11.38326 -11.01569 -10.89902 -10.79287 -10.37674 -10.08368 -9.90631 -9.47992 -9.29978 -8.85623 -8.53231 -6.34254 -4.44120 0.71698 0.74542 0.88502 1.99691 2.40353 3.08579 3.13400 3.20020 3.23263 3.24855 3.88187 3.91763 4.17928 4.20687 4.23486 4.33835 4.41280 4.46417 4.69418 4.78033 4.83501 4.84810 4.90005 4.98637 5.06292 5.11653 5.20251 5.46335 5.55196 5.64474 5.66456 5.78010 5.80945 5.98711 6.10133 6.21349 6.26474 6.65339 6.89887 7.12627 7.46019 7.96654 8.55513 9.20219 10.76567 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012290 B = 0.003666 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.794181 B = 7635.860941 C = 8916.842898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.143 4.143 3 C 0.062 3.938 4 H 0.115 0.885 5 O -0.272 6.272 6 C 0.099 3.901 7 C -0.188 4.188 8 C -0.089 4.089 9 C -0.130 4.130 10 C -0.117 4.117 11 C 0.074 3.926 12 F -0.128 7.128 13 C 0.530 3.470 14 O -0.458 6.458 15 N -1.058 6.058 16 S 2.576 3.424 17 O -0.956 6.956 18 O -0.939 6.939 19 C -0.458 4.458 20 C -0.535 4.535 21 H 0.088 0.912 22 C 0.092 3.908 23 N -0.877 5.877 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.261 1.261 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.143 0.857 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.143 0.857 37 H 0.426 0.574 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.965 -2.020 -1.295 28.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.181 4.181 3 C 0.000 4.000 4 H 0.132 0.868 5 O -0.184 6.184 6 C 0.053 3.947 7 C -0.207 4.207 8 C -0.107 4.107 9 C -0.148 4.148 10 C -0.135 4.135 11 C 0.054 3.946 12 F -0.106 7.106 13 C 0.313 3.687 14 O -0.326 6.326 15 N -0.819 5.819 16 S 2.677 3.323 17 O -0.946 6.946 18 O -0.929 6.929 19 C -0.594 4.594 20 C -0.573 4.573 21 H 0.106 0.894 22 C -0.115 4.115 23 N -0.513 5.513 24 Si 0.705 3.295 25 H -0.195 1.195 26 H -0.204 1.204 27 H -0.186 1.186 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.161 0.839 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.160 0.840 37 H 0.261 0.739 38 H 0.115 0.885 39 H 0.099 0.901 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -26.622 -2.384 -2.197 26.819 hybrid contribution -0.786 1.210 0.473 1.519 sum -27.408 -1.174 -1.724 27.488 Atomic orbital electron populations 1.21942 0.94036 1.02962 1.02424 1.22041 0.97705 0.93264 1.05050 1.22572 0.92523 0.96220 0.88638 0.86806 1.86310 1.41848 1.58033 1.32216 1.19103 0.88676 0.92688 0.94266 1.21308 0.97792 1.04030 0.97561 1.21009 0.95897 0.95043 0.98747 1.20950 1.00548 1.00857 0.92459 1.21067 0.93665 0.98511 1.00293 1.17034 0.94079 1.00995 0.82502 1.91543 1.75719 1.95139 1.48236 1.20128 0.90498 0.77057 0.81030 1.90974 1.64635 1.39802 1.37197 1.55602 1.31569 1.66003 1.28755 1.06442 0.71198 0.80373 0.74310 1.93551 1.81453 1.73467 1.46173 1.93565 1.76999 1.77919 1.44450 1.28104 1.08180 1.16650 1.06453 1.20009 0.85451 0.96370 1.55510 0.89426 1.24839 0.94996 0.98834 0.92851 1.69852 1.09715 1.24959 1.46736 0.86759 0.81251 0.82407 0.79041 1.19542 1.20363 1.18578 0.92085 0.91921 0.91439 0.89280 0.89114 0.83946 0.84903 0.84795 0.83966 0.73924 0.88484 0.90077 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 8.48 37.16 0.32 -0.67 16 2 C -0.14 -1.17 5.59 -26.73 -0.15 -1.32 16 3 C 0.06 0.68 2.54 -27.88 -0.07 0.61 16 4 H 0.11 0.86 5.43 -51.93 -0.28 0.57 16 5 O -0.27 -3.73 8.98 -39.53 -0.35 -4.09 16 6 C 0.10 1.14 5.66 -39.18 -0.22 0.92 16 7 C -0.19 -1.52 7.36 -39.45 -0.29 -1.81 16 8 C -0.09 -0.58 10.04 -39.59 -0.40 -0.97 16 9 C -0.13 -0.86 10.04 -39.57 -0.40 -1.26 16 10 C -0.12 -0.99 10.02 -39.54 -0.40 -1.39 16 11 C 0.07 0.88 7.31 -39.30 -0.29 0.59 16 12 F -0.13 -1.83 17.11 2.25 0.04 -1.80 16 13 C 0.53 8.19 6.97 -10.98 -0.08 8.12 16 14 O -0.46 -9.46 14.60 -22.96 -0.34 -9.80 16 15 N -1.06 -14.99 5.46 31.22 0.17 -14.82 16 16 S 2.58 52.89 5.03 -107.50 -0.54 52.35 16 17 O -0.96 -20.61 18.08 -57.54 -1.04 -21.65 16 18 O -0.94 -22.80 17.04 -64.79 -1.10 -23.90 16 19 C -0.46 -10.59 4.71 36.00 0.17 -10.42 16 20 C -0.53 -15.17 9.68 -34.44 -0.33 -15.51 16 21 H 0.09 2.65 7.96 -52.48 -0.42 2.24 16 22 C 0.09 2.63 5.47 -17.82 -0.10 2.53 16 23 N -0.88 -26.28 13.96 55.43 0.77 -25.51 16 24 Si 0.88 20.91 27.47 -169.99 -4.67 16.24 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 28 H 0.06 0.27 6.73 -51.93 -0.35 -0.08 16 29 H 0.06 0.48 6.53 -51.93 -0.34 0.14 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 0.53 7.43 -51.93 -0.39 0.15 16 33 H 0.14 0.82 4.27 -52.49 -0.22 0.60 16 34 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 35 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 36 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.43 3.82 8.15 -34.47 -0.28 3.54 16 38 H 0.10 2.27 6.25 -51.93 -0.32 1.94 16 39 H 0.08 1.63 7.57 -51.93 -0.39 1.24 16 40 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 351.43 15.07 5.30 5.30 Total: -1.00 -38.85 351.43 -8.28 -47.12 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.28 Total: 1.12 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -2.23 Total: -20.58 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.94 Total: -40.33 kcal Atomic # 8 Polarization: -56.60 SS G_CDS: -2.83 Total: -59.43 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Atomic # 16 Polarization: 52.89 SS G_CDS: -0.54 Total: 52.35 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -38.85 -8.28 -47.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835411324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.752 kcal (2) G-P(sol) polarization free energy of solvation -38.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds