Wall clock time and date at job start Wed Apr 1 2020 04:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47241 * 2 1 4 4 O 1.42900 * 109.46971 * 119.99879 * 2 1 3 5 5 C 1.35944 * 117.00385 * 58.93374 * 4 2 1 6 6 C 1.38708 * 120.02771 * 6.21047 * 5 4 2 7 7 C 1.38149 * 119.96702 * 180.25233 * 6 5 4 8 8 C 1.38452 * 120.03191 * 359.47159 * 7 6 5 9 9 F 1.35102 * 119.96874 * 180.29510 * 8 7 6 10 10 C 1.38449 * 120.06169 * 0.27416 * 8 7 6 11 11 C 1.38152 * 120.02931 * 359.97438 * 10 8 7 12 12 C 1.50697 * 109.47393 * 239.99777 * 2 1 3 13 13 O 1.21285 * 120.00217 * 240.00532 * 12 2 1 14 14 N 1.34773 * 119.99934 * 59.99582 * 12 2 1 15 15 S 1.65605 * 120.00296 * 180.02562 * 14 12 2 16 16 O 1.42097 * 104.28023 * 181.07412 * 15 14 12 17 17 O 1.42104 * 104.27405 * 308.93493 * 15 14 12 18 18 C 1.81401 * 104.44856 * 65.00159 * 15 14 12 19 19 C 1.50696 * 109.47083 * 180.02562 * 18 15 14 20 20 H 1.07995 * 120.00201 * 0.02562 * 19 18 15 21 21 C 1.37876 * 119.99955 * 180.02562 * 19 18 15 22 22 N 1.31514 * 120.00191 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99897 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47066 * 90.00512 * 23 21 19 25 25 H 1.48505 * 109.47170 * 210.00123 * 23 21 19 26 26 H 1.48500 * 109.47191 * 330.00235 * 23 21 19 27 27 H 1.09003 * 109.47601 * 311.97270 * 1 2 3 28 28 H 1.08998 * 109.47382 * 71.96752 * 1 2 3 29 29 H 1.09001 * 109.47579 * 191.97055 * 1 2 3 30 30 H 1.08999 * 109.47374 * 175.29812 * 3 2 1 31 31 H 1.09002 * 109.47178 * 295.29350 * 3 2 1 32 32 H 1.08997 * 109.47302 * 55.29009 * 3 2 1 33 33 H 1.08004 * 120.01733 * 0.02562 * 6 5 4 34 34 H 1.08007 * 119.97901 * 179.74535 * 7 6 5 35 35 H 1.07992 * 119.98683 * 179.97438 * 10 8 7 36 36 H 1.08000 * 120.01658 * 180.02562 * 11 10 8 37 37 H 0.97001 * 120.00451 * 0.02562 * 14 12 2 38 38 H 1.09002 * 109.47211 * 300.00448 * 18 15 14 39 39 H 1.09002 * 109.46751 * 59.99952 * 18 15 14 40 40 H 0.97005 * 120.00069 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 1.6227 -1.9673 1.3325 6 6 0.9135 -2.6146 0.3315 7 6 0.5198 -3.9276 0.5033 8 6 0.8423 -4.6008 1.6694 9 9 0.4618 -5.8867 1.8337 10 6 1.5547 -3.9575 2.6672 11 6 1.9452 -2.6429 2.5002 12 6 2.0323 -0.7104 -1.2304 13 8 2.7295 -1.6966 -1.1191 14 7 1.7067 -0.2501 -2.4545 15 16 2.2582 -1.0311 -3.8066 16 8 1.7471 -0.2635 -4.8877 17 8 3.6576 -1.1552 -3.5933 18 6 1.4586 -2.6583 -3.7473 19 6 1.8876 -3.4726 -4.9404 20 1 2.5731 -3.0535 -5.6620 21 6 1.4050 -4.7529 -5.1108 22 7 1.7791 -5.4634 -6.1524 23 14 0.2199 -5.4782 -3.8623 24 1 -1.1751 -5.1655 -4.2642 25 1 0.4004 -6.9511 -3.8060 26 1 0.4922 -4.8946 -2.5242 27 1 -0.3634 0.6873 0.7640 28 1 -0.3634 0.3181 -0.9772 29 1 -0.3634 -1.0053 0.2131 30 1 3.1267 1.4437 0.0842 31 1 1.7471 1.9314 -0.9292 32 1 1.6094 1.9801 0.8447 33 1 0.6660 -2.0913 -0.5803 34 1 -0.0360 -4.4306 -0.2742 35 1 1.8052 -4.4836 3.5764 36 1 2.5013 -2.1414 3.2785 37 1 1.1492 0.5388 -2.5436 38 1 1.7506 -3.1734 -2.8321 39 1 0.3760 -2.5318 -3.7634 40 1 1.4398 -6.3643 -6.2721 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835412959.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:47 Heat of formation + Delta-G solvation = -148.097237 kcal Electronic energy + Delta-G solvation = -29714.665872 eV Core-core repulsion = 25344.733298 eV Total energy + Delta-G solvation = -4369.932574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.81188 -41.79501 -39.19270 -37.48846 -36.49096 -35.43236 -35.00903 -33.33988 -33.13456 -31.32320 -29.91270 -29.59850 -27.75870 -24.77173 -23.37567 -23.04968 -22.72710 -20.87228 -19.65934 -18.78026 -17.92458 -17.56343 -17.04274 -16.88967 -16.54295 -16.07991 -15.70292 -15.45593 -15.34866 -14.97115 -14.68577 -14.54603 -14.21308 -14.05513 -13.60271 -13.46050 -13.04311 -12.85938 -12.77251 -12.73420 -12.69098 -12.59370 -12.32250 -12.20803 -11.93409 -11.74564 -11.53016 -11.43259 -11.23280 -11.04762 -10.90303 -10.78508 -10.38997 -10.09317 -9.93698 -9.53290 -9.20322 -8.89370 -8.13693 -6.37907 -4.48097 0.68641 1.06546 1.14415 1.88778 2.69238 2.84719 3.08985 3.16089 3.20253 3.46809 3.81042 4.15767 4.19495 4.23841 4.26764 4.32436 4.58943 4.65100 4.72940 4.88435 4.95120 5.01649 5.03769 5.05262 5.15138 5.23205 5.25148 5.47955 5.58816 5.67849 5.74729 6.02355 6.03344 6.05832 6.11768 6.16605 6.51503 6.61089 7.05018 7.07986 7.35225 7.92839 8.51674 9.16133 10.72874 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.009134 B = 0.006211 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3064.879544 B = 4506.796955 C = 6948.802131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.098 3.902 3 C -0.139 4.139 4 O -0.280 6.280 5 C 0.128 3.872 6 C -0.161 4.161 7 C -0.114 4.114 8 C 0.062 3.938 9 F -0.142 7.142 10 C -0.117 4.117 11 C -0.122 4.122 12 C 0.505 3.495 13 O -0.462 6.462 14 N -1.058 6.058 15 S 2.572 3.428 16 O -0.956 6.956 17 O -0.939 6.939 18 C -0.458 4.458 19 C -0.534 4.534 20 H 0.087 0.913 21 C 0.093 3.907 22 N -0.876 5.876 23 Si 0.878 3.122 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.260 1.260 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.426 0.574 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.351 11.687 18.474 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.054 3.946 3 C -0.196 4.196 4 O -0.193 6.193 5 C 0.083 3.917 6 C -0.180 4.180 7 C -0.133 4.133 8 C 0.043 3.957 9 F -0.121 7.121 10 C -0.136 4.136 11 C -0.140 4.140 12 C 0.289 3.711 13 O -0.331 6.331 14 N -0.820 5.820 15 S 2.672 3.328 16 O -0.946 6.946 17 O -0.929 6.929 18 C -0.593 4.593 19 C -0.573 4.573 20 H 0.105 0.895 21 C -0.115 4.115 22 N -0.511 5.511 23 Si 0.703 3.297 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.184 1.184 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.150 0.850 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.261 0.739 38 H 0.115 0.885 39 H 0.099 0.901 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.097 11.258 18.002 21.836 hybrid contribution -1.407 -0.811 0.392 1.671 sum -6.503 10.447 18.394 22.131 Atomic orbital electron populations 1.22864 0.91922 1.05880 1.05009 1.21887 0.95750 0.93992 0.82975 1.21851 1.03696 0.89746 1.04344 1.86213 1.70014 1.22293 1.40790 1.18811 0.94883 0.83815 0.94158 1.21312 1.02013 0.95758 0.98887 1.21058 1.00879 0.94589 0.96732 1.17555 1.02136 0.79754 0.96296 1.91488 1.89701 1.35036 1.95842 1.20878 0.98955 0.94588 0.99143 1.20155 1.03602 0.93771 0.96519 1.21090 0.79664 0.84806 0.85532 1.91032 1.32805 1.23431 1.85831 1.55677 1.62122 1.41639 1.22530 1.06560 0.76006 0.78255 0.71948 1.93554 1.81467 1.69743 1.49877 1.93566 1.29086 1.86911 1.83337 1.28109 1.07784 1.15462 1.07988 1.19978 1.31642 0.99920 1.05761 0.89469 1.24836 0.95498 0.95963 0.95183 1.69849 1.42795 1.10823 1.27658 0.86803 0.81372 0.79226 0.82271 1.19509 1.20322 1.18417 0.89279 0.89729 0.89390 0.90151 0.89463 0.89562 0.84984 0.84345 0.84099 0.84140 0.73850 0.88548 0.90121 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.52 8.14 37.15 0.30 -1.22 16 2 C 0.10 1.03 0.96 -91.78 -0.09 0.94 16 3 C -0.14 -1.02 8.77 37.16 0.33 -0.69 16 4 O -0.28 -3.47 9.63 -39.47 -0.38 -3.85 16 5 C 0.13 1.72 5.53 -39.23 -0.22 1.50 16 6 C -0.16 -2.33 5.52 -39.44 -0.22 -2.55 16 7 C -0.11 -1.70 10.02 -39.54 -0.40 -2.09 16 8 C 0.06 0.87 7.30 -39.42 -0.29 0.58 16 9 F -0.14 -2.08 17.27 2.25 0.04 -2.04 16 10 C -0.12 -1.37 10.02 -39.54 -0.40 -1.76 16 11 C -0.12 -1.42 9.99 -39.44 -0.39 -1.81 16 12 C 0.50 7.41 4.30 -10.99 -0.05 7.36 16 13 O -0.46 -8.81 11.91 -22.97 -0.27 -9.08 16 14 N -1.06 -14.61 5.27 31.22 0.16 -14.44 16 15 S 2.57 51.90 5.03 -107.50 -0.54 51.36 16 16 O -0.96 -20.45 18.08 -57.54 -1.04 -21.49 16 17 O -0.94 -22.43 17.04 -64.79 -1.10 -23.54 16 18 C -0.46 -10.26 4.71 36.00 0.17 -10.09 16 19 C -0.53 -14.89 9.68 -34.44 -0.33 -15.22 16 20 H 0.09 2.61 7.96 -52.49 -0.42 2.20 16 21 C 0.09 2.61 5.47 -17.82 -0.10 2.51 16 22 N -0.88 -25.98 13.96 55.43 0.77 -25.21 16 23 Si 0.88 20.38 27.47 -169.99 -4.67 15.71 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.26 -5.60 6.38 56.52 0.36 -5.24 16 27 H 0.09 0.49 8.06 -51.93 -0.42 0.07 16 28 H 0.08 0.47 7.27 -51.93 -0.38 0.09 16 29 H 0.09 0.78 4.84 -51.93 -0.25 0.53 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.45 7.43 -51.93 -0.39 0.07 16 32 H 0.09 0.44 8.10 -51.93 -0.42 0.02 16 33 H 0.13 1.84 3.85 -52.48 -0.20 1.64 16 34 H 0.14 2.06 7.90 -52.48 -0.41 1.64 16 35 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.43 3.80 7.48 -34.47 -0.26 3.54 16 38 H 0.10 2.16 6.25 -51.92 -0.32 1.83 16 39 H 0.08 1.56 7.57 -51.92 -0.39 1.17 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 345.92 15.07 5.21 5.21 Total: -1.00 -37.13 345.92 -7.80 -44.93 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.31 Total: 4.98 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -1.68 Total: -22.55 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.94 Total: -39.65 kcal Atomic # 8 Polarization: -55.16 SS G_CDS: -2.80 Total: -57.96 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.67 Total: 15.71 kcal Atomic # 16 Polarization: 51.90 SS G_CDS: -0.54 Total: 51.36 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.13 -7.80 -44.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835412959.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.162 kcal (2) G-P(sol) polarization free energy of solvation -37.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds