Wall clock time and date at job start Wed Apr 1 2020 03:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34233 * 116.99837 * 2 1 4 4 O 1.20823 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99850 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47084 * 180.02562 * 5 3 2 7 7 N 1.46501 * 109.47319 * 179.97438 * 6 5 3 8 8 C 1.36935 * 119.99715 * 276.29092 * 7 6 5 9 9 H 1.08001 * 119.99768 * 139.44762 * 8 7 6 10 10 C 1.38809 * 120.00152 * 319.45587 * 8 7 6 11 11 N 1.31623 * 119.99867 * 339.62893 * 10 8 7 12 12 Si 1.86800 * 120.00355 * 159.63862 * 10 8 7 13 13 H 1.48498 * 109.47194 * 89.99553 * 12 10 8 14 14 H 1.48497 * 109.47228 * 209.99637 * 12 10 8 15 15 H 1.48495 * 109.46923 * 329.99605 * 12 10 8 16 16 S 1.65599 * 120.00233 * 96.28794 * 7 6 5 17 17 O 1.42099 * 106.40240 * 155.86115 * 16 7 6 18 18 O 1.42102 * 106.40078 * 22.94198 * 16 7 6 19 19 C 1.76199 * 107.22031 * 269.39930 * 16 7 6 20 20 C 1.38267 * 119.98540 * 346.49410 * 19 16 7 21 21 C 1.38229 * 120.05116 * 180.02562 * 20 19 16 22 22 C 1.38219 * 120.02458 * 359.96740 * 21 20 19 23 23 C 1.38445 * 119.97195 * 0.02562 * 22 21 20 24 24 F 1.35101 * 120.02317 * 180.02562 * 23 22 21 25 25 C 1.38175 * 119.98885 * 166.48142 * 19 16 7 26 26 C 1.50702 * 120.01270 * 0.02945 * 25 19 16 27 27 H 1.08994 * 109.46843 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47031 * 300.00662 * 1 2 3 29 29 H 1.09006 * 109.46995 * 60.00084 * 1 2 3 30 30 H 1.08992 * 109.47358 * 59.99717 * 5 3 2 31 31 H 1.09003 * 109.46544 * 299.99337 * 5 3 2 32 32 H 1.08992 * 109.47540 * 59.99479 * 6 5 3 33 33 H 1.09003 * 109.46602 * 299.98951 * 6 5 3 34 34 H 0.96998 * 120.00183 * 179.97438 * 11 10 8 35 35 H 1.08003 * 119.97591 * 0.26658 * 20 19 16 36 36 H 1.07995 * 119.98611 * 179.97438 * 21 20 19 37 37 H 1.07999 * 120.01379 * 180.02562 * 22 21 20 38 38 H 1.08998 * 109.46843 * 273.34916 * 26 25 19 39 39 H 1.09009 * 109.47121 * 33.34490 * 26 25 19 40 40 H 1.08994 * 109.47061 * 153.34537 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8188 0.0002 8 6 6.1536 2.7243 1.1790 9 1 7.0701 2.1548 1.2237 10 6 5.6755 3.3603 2.3164 11 7 4.8207 4.3549 2.2040 12 14 6.2453 2.8050 4.0064 13 1 7.4604 3.5656 4.3938 14 1 5.1685 3.0536 4.9983 15 1 6.5600 1.3542 3.9707 16 16 6.2818 3.0198 -1.4251 17 8 7.5306 3.6099 -1.0909 18 8 5.3633 3.6080 -2.3360 19 6 6.6427 1.4126 -2.0505 20 6 6.4979 0.3053 -1.2352 21 6 6.7811 -0.9562 -1.7243 22 6 7.2087 -1.1121 -3.0294 23 6 7.3539 -0.0041 -3.8466 24 9 7.7714 -0.1553 -5.1226 25 6 7.0699 1.2592 -3.3556 26 6 7.2280 2.4663 -4.2438 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.9557 0.7810 -0.8907 31 1 3.9563 0.7807 0.8893 32 1 3.6108 3.2357 0.8905 33 1 3.6101 3.2367 -0.8895 34 1 4.4863 4.7992 2.9988 35 1 6.1595 0.4256 -0.2167 36 1 6.6680 -1.8203 -1.0865 37 1 7.4295 -2.0978 -3.4115 38 1 6.2745 2.6942 -4.7201 39 1 7.5478 3.3189 -3.6447 40 1 7.9760 2.2589 -5.0089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867739039.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:48 Heat of formation + Delta-G solvation = -170.512440 kcal Electronic energy + Delta-G solvation = -29402.451019 eV Core-core repulsion = 25031.546449 eV Total energy + Delta-G solvation = -4370.904570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -48.88800 -40.11056 -38.97540 -36.60308 -36.08448 -35.76767 -34.83205 -32.90563 -32.08582 -30.64178 -30.27956 -27.52452 -27.00522 -25.04285 -23.23050 -22.90910 -21.71632 -20.27080 -18.80591 -18.10720 -17.53089 -16.90694 -16.58393 -16.32402 -16.26552 -15.92306 -15.69868 -15.59133 -15.34456 -14.74640 -14.55305 -13.82871 -13.56980 -13.51488 -13.38533 -13.22639 -12.98561 -12.64518 -12.54328 -12.33221 -12.00066 -11.92969 -11.82623 -11.49856 -11.41315 -11.29274 -11.09264 -10.98219 -10.93380 -10.72342 -10.61022 -10.42023 -10.12004 -10.09056 -9.99617 -9.19937 -9.14334 -8.58736 -7.92675 -6.42923 -4.19580 0.87338 1.18989 1.35763 2.57994 2.97834 3.13793 3.21310 3.22286 3.43083 3.95051 4.20441 4.30738 4.53187 4.67435 4.78358 4.88737 5.00531 5.17327 5.20060 5.25436 5.26671 5.49801 5.55993 5.58611 5.59111 5.65246 5.71217 5.78032 5.91410 6.07846 6.09224 6.14237 6.19708 6.27410 6.45511 6.66641 6.88368 7.05962 7.24897 7.56585 8.09182 8.24156 8.82921 9.20841 10.59661 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.008875 B = 0.005512 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3154.298633 B = 5078.926635 C = 6617.242756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.464 3.536 4 O -0.502 6.502 5 C -0.135 4.135 6 C 0.134 3.866 7 N -0.837 5.837 8 C -0.299 4.299 9 H 0.095 0.905 10 C 0.047 3.953 11 N -0.842 5.842 12 Si 0.915 3.085 13 H -0.274 1.274 14 H -0.281 1.281 15 H -0.266 1.266 16 S 2.621 3.379 17 O -0.962 6.962 18 O -0.990 6.990 19 C -0.630 4.630 20 C -0.035 4.035 21 C -0.119 4.119 22 C -0.111 4.111 23 C 0.070 3.930 24 F -0.140 7.140 25 C -0.024 4.024 26 C -0.143 4.143 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.075 0.925 34 H 0.272 0.728 35 H 0.157 0.843 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.998 -12.102 -4.679 13.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.307 3.693 4 O -0.389 6.389 5 C -0.175 4.175 6 C 0.006 3.994 7 N -0.668 5.668 8 C -0.436 4.436 9 H 0.113 0.887 10 C -0.164 4.164 11 N -0.479 5.479 12 Si 0.741 3.259 13 H -0.200 1.200 14 H -0.207 1.207 15 H -0.190 1.190 16 S 2.718 3.282 17 O -0.952 6.952 18 O -0.980 6.980 19 C -0.711 4.711 20 C -0.054 4.054 21 C -0.138 4.138 22 C -0.130 4.130 23 C 0.050 3.950 24 F -0.118 7.118 25 C -0.026 4.026 26 C -0.199 4.199 27 H 0.114 0.886 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.175 0.825 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.031 -10.909 -5.222 12.264 hybrid contribution 0.171 -1.041 0.514 1.174 sum -1.859 -11.950 -4.708 12.978 Atomic orbital electron populations 1.23179 0.77270 1.03065 1.02416 1.86533 1.22810 1.34361 1.84654 1.24033 0.92352 0.80979 0.71961 1.90667 1.67221 1.36191 1.44780 1.22152 0.86148 1.03827 1.05374 1.21116 0.80896 0.90928 1.06413 1.52507 1.11267 1.85122 1.17891 1.19145 1.09920 1.29772 0.84766 0.88725 1.25555 0.96871 0.93500 1.00424 1.69992 1.29721 1.17555 1.30654 0.86133 0.78676 0.79553 0.81573 1.19961 1.20665 1.19048 1.05772 0.74575 0.73399 0.74490 1.93480 1.45217 1.73146 1.83318 1.93446 1.63869 1.74128 1.66519 1.31469 1.12180 1.25735 1.01723 1.21311 0.93004 0.91056 1.00017 1.21155 0.99809 0.98053 0.94766 1.21289 0.99399 0.97814 0.94517 1.17502 1.03538 0.94046 0.79890 1.91463 1.88011 1.96397 1.35956 1.19449 0.95348 0.94412 0.93422 1.21133 1.04506 0.94537 0.99754 0.88622 0.92069 0.92152 0.89047 0.86684 0.86239 0.90627 0.91743 0.82537 0.84317 0.84533 0.88333 0.90886 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.45 16 2 O -0.37 -5.34 10.57 -39.26 -0.41 -5.75 16 3 C 0.46 8.01 7.96 36.00 0.29 8.29 16 4 O -0.50 -10.07 15.73 -18.75 -0.29 -10.36 16 5 C -0.14 -2.29 5.39 -27.88 -0.15 -2.44 16 6 C 0.13 2.87 4.60 -4.04 -0.02 2.85 16 7 N -0.84 -18.83 1.95 -59.91 -0.12 -18.95 16 8 C -0.30 -6.98 8.11 -15.06 -0.12 -7.10 16 9 H 0.10 2.10 7.91 -52.49 -0.42 1.68 16 10 C 0.05 1.12 5.01 -17.43 -0.09 1.04 16 11 N -0.84 -21.48 11.54 55.49 0.64 -20.84 16 12 Si 0.92 18.37 29.60 -169.99 -5.03 13.34 16 13 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 14 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 15 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 16 S 2.62 58.82 4.27 -107.50 -0.46 58.36 16 17 O -0.96 -24.53 16.95 -57.17 -0.97 -25.50 16 18 O -0.99 -23.47 15.44 -57.17 -0.88 -24.35 16 19 C -0.63 -11.66 5.83 -39.59 -0.23 -11.89 16 20 C -0.04 -0.55 8.31 -39.57 -0.33 -0.88 16 21 C -0.12 -1.51 10.04 -39.59 -0.40 -1.91 16 22 C -0.11 -1.42 10.03 -39.51 -0.40 -1.82 16 23 C 0.07 1.07 7.24 -39.42 -0.29 0.78 16 24 F -0.14 -2.03 16.42 2.25 0.04 -2.00 16 25 C -0.02 -0.42 5.88 -104.56 -0.62 -1.04 16 26 C -0.14 -2.34 8.62 36.01 0.31 -2.03 16 27 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 29 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 30 H 0.09 1.38 6.87 -51.93 -0.36 1.03 16 31 H 0.12 1.77 8.14 -51.93 -0.42 1.35 16 32 H 0.12 2.84 5.62 -51.93 -0.29 2.55 16 33 H 0.08 1.68 6.84 -51.93 -0.36 1.33 16 34 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 35 H 0.16 2.33 6.02 -52.48 -0.32 2.01 16 36 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 39 H 0.07 1.29 6.58 -51.92 -0.34 0.95 16 40 H 0.08 1.14 7.54 -51.93 -0.39 0.74 16 LS Contribution 353.89 15.07 5.33 5.33 Total: -1.00 -31.32 353.89 -7.69 -39.01 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -4.56 Total: 6.41 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -0.97 Total: -14.69 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.52 Total: -39.79 kcal Atomic # 8 Polarization: -63.40 SS G_CDS: -2.56 Total: -65.97 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Atomic # 16 Polarization: 58.82 SS G_CDS: -0.46 Total: 58.36 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.32 -7.69 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867739039.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.506 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds