Wall clock time and date at job start Wed Apr 1 2020 03:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34233 * 116.99837 * 2 1 4 4 O 1.20823 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99850 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47084 * 180.02562 * 5 3 2 7 7 N 1.46501 * 109.47319 * 179.97438 * 6 5 3 8 8 C 1.36935 * 119.99715 * 276.29092 * 7 6 5 9 9 H 1.08001 * 119.99768 * 139.44762 * 8 7 6 10 10 C 1.38809 * 120.00152 * 319.45587 * 8 7 6 11 11 N 1.31623 * 119.99867 * 339.62893 * 10 8 7 12 12 Si 1.86800 * 120.00355 * 159.63862 * 10 8 7 13 13 H 1.48498 * 109.47194 * 89.99553 * 12 10 8 14 14 H 1.48497 * 109.47228 * 209.99637 * 12 10 8 15 15 H 1.48495 * 109.46923 * 329.99605 * 12 10 8 16 16 S 1.65599 * 120.00233 * 96.28794 * 7 6 5 17 17 O 1.42099 * 106.40240 * 155.86115 * 16 7 6 18 18 O 1.42102 * 106.40078 * 22.94198 * 16 7 6 19 19 C 1.76199 * 107.22031 * 269.39930 * 16 7 6 20 20 C 1.38267 * 119.98540 * 346.49410 * 19 16 7 21 21 C 1.38229 * 120.05116 * 180.02562 * 20 19 16 22 22 C 1.38219 * 120.02458 * 359.96740 * 21 20 19 23 23 C 1.38445 * 119.97195 * 0.02562 * 22 21 20 24 24 F 1.35101 * 120.02317 * 180.02562 * 23 22 21 25 25 C 1.38175 * 119.98885 * 166.48142 * 19 16 7 26 26 C 1.50702 * 120.01270 * 0.02945 * 25 19 16 27 27 H 1.08994 * 109.46843 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47031 * 300.00662 * 1 2 3 29 29 H 1.09006 * 109.46995 * 60.00084 * 1 2 3 30 30 H 1.08992 * 109.47358 * 59.99717 * 5 3 2 31 31 H 1.09003 * 109.46544 * 299.99337 * 5 3 2 32 32 H 1.08992 * 109.47540 * 59.99479 * 6 5 3 33 33 H 1.09003 * 109.46602 * 299.98951 * 6 5 3 34 34 H 0.96998 * 120.00183 * 179.97438 * 11 10 8 35 35 H 1.08003 * 119.97591 * 0.26658 * 20 19 16 36 36 H 1.07995 * 119.98611 * 179.97438 * 21 20 19 37 37 H 1.07999 * 120.01379 * 180.02562 * 22 21 20 38 38 H 1.08998 * 109.46843 * 273.34916 * 26 25 19 39 39 H 1.09009 * 109.47121 * 33.34490 * 26 25 19 40 40 H 1.08994 * 109.47061 * 153.34537 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8188 0.0002 8 6 6.1536 2.7243 1.1790 9 1 7.0701 2.1548 1.2237 10 6 5.6755 3.3603 2.3164 11 7 4.8207 4.3549 2.2040 12 14 6.2453 2.8050 4.0064 13 1 7.4604 3.5656 4.3938 14 1 5.1685 3.0536 4.9983 15 1 6.5600 1.3542 3.9707 16 16 6.2818 3.0198 -1.4251 17 8 7.5306 3.6099 -1.0909 18 8 5.3633 3.6080 -2.3360 19 6 6.6427 1.4126 -2.0505 20 6 6.4979 0.3053 -1.2352 21 6 6.7811 -0.9562 -1.7243 22 6 7.2087 -1.1121 -3.0294 23 6 7.3539 -0.0041 -3.8466 24 9 7.7714 -0.1553 -5.1226 25 6 7.0699 1.2592 -3.3556 26 6 7.2280 2.4663 -4.2438 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.9557 0.7810 -0.8907 31 1 3.9563 0.7807 0.8893 32 1 3.6108 3.2357 0.8905 33 1 3.6101 3.2367 -0.8895 34 1 4.4863 4.7992 2.9988 35 1 6.1595 0.4256 -0.2167 36 1 6.6680 -1.8203 -1.0865 37 1 7.4295 -2.0978 -3.4115 38 1 6.2745 2.6942 -4.7201 39 1 7.5478 3.3189 -3.6447 40 1 7.9760 2.2589 -5.0089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867739039.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:47 Heat of formation + Delta-G solvation = -190.562877 kcal Electronic energy + Delta-G solvation = -29403.320471 eV Core-core repulsion = 25031.546449 eV Total energy + Delta-G solvation = -4371.774022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -50.01448 -41.43420 -40.15066 -38.11238 -37.90036 -37.26098 -36.64961 -34.13770 -33.79421 -31.91514 -31.77641 -28.62097 -28.22330 -26.72657 -24.52213 -24.42144 -22.91057 -21.62847 -20.47119 -19.55264 -18.97848 -18.43824 -18.05723 -17.61795 -17.55327 -17.32175 -16.87101 -16.79605 -16.70209 -16.45589 -16.21496 -15.24937 -14.95041 -14.67486 -14.61576 -14.45152 -14.41936 -14.08538 -13.87151 -13.68984 -13.23496 -13.21282 -13.15246 -12.98464 -12.93376 -12.83451 -12.82466 -12.73652 -12.54874 -12.35334 -12.00744 -11.79896 -11.67202 -11.53228 -11.49073 -10.91917 -10.35945 -9.76623 -9.69209 -8.23879 -6.05436 -0.36247 -0.29794 0.03628 1.22778 1.54643 1.57138 1.68457 1.76073 2.25814 2.35430 2.59990 2.83639 3.07486 3.19840 3.45718 3.67330 3.84141 3.90633 3.93514 4.17350 4.21925 4.30033 4.30823 4.37375 4.37554 4.40505 4.44473 4.62743 4.70253 4.73920 4.84702 4.92564 5.00981 5.08228 5.17934 5.34148 5.38402 5.47256 5.77456 5.79245 6.42738 6.78880 7.03196 7.39436 8.78965 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.008875 B = 0.005512 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3154.298633 B = 5078.926635 C = 6617.242756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.469 3.531 4 O -0.540 6.540 5 C -0.126 4.126 6 C 0.138 3.862 7 N -0.842 5.842 8 C -0.302 4.302 9 H 0.107 0.893 10 C 0.001 3.999 11 N -0.884 5.884 12 Si 0.978 3.022 13 H -0.282 1.282 14 H -0.284 1.284 15 H -0.238 1.238 16 S 2.614 3.386 17 O -1.010 7.010 18 O -1.022 7.022 19 C -0.643 4.643 20 C -0.043 4.043 21 C -0.101 4.101 22 C -0.092 4.092 23 C 0.065 3.935 24 F -0.137 7.137 25 C -0.050 4.050 26 C -0.148 4.148 27 H 0.137 0.863 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.114 0.886 31 H 0.137 0.863 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.272 0.728 35 H 0.163 0.837 36 H 0.188 0.812 37 H 0.181 0.819 38 H 0.097 0.903 39 H 0.047 0.953 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.651 -16.962 -4.247 17.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.313 3.687 4 O -0.430 6.430 5 C -0.165 4.165 6 C 0.010 3.990 7 N -0.672 5.672 8 C -0.440 4.440 9 H 0.124 0.876 10 C -0.206 4.206 11 N -0.522 5.522 12 Si 0.801 3.199 13 H -0.209 1.209 14 H -0.209 1.209 15 H -0.160 1.160 16 S 2.718 3.282 17 O -1.000 7.000 18 O -1.011 7.011 19 C -0.731 4.731 20 C -0.061 4.061 21 C -0.119 4.119 22 C -0.110 4.110 23 C 0.045 3.955 24 F -0.115 7.115 25 C -0.052 4.052 26 C -0.205 4.205 27 H 0.155 0.845 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.132 0.868 31 H 0.155 0.845 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.180 0.820 36 H 0.205 0.795 37 H 0.198 0.802 38 H 0.116 0.884 39 H 0.066 0.934 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.701 -15.746 -4.793 16.547 hybrid contribution 0.044 0.389 0.277 0.479 sum -1.657 -15.357 -4.516 16.093 Atomic orbital electron populations 1.23557 0.75083 1.05765 1.02315 1.86502 1.24825 1.32338 1.83880 1.23976 0.92379 0.81253 0.71089 1.90662 1.67979 1.37621 1.46690 1.21954 0.86473 1.00670 1.07441 1.20898 0.80250 0.93875 1.03964 1.52543 1.11534 1.85474 1.17697 1.19560 1.10283 1.29304 0.84852 0.87561 1.26476 0.96819 0.93237 1.04059 1.70129 1.31384 1.19155 1.31550 0.85171 0.77478 0.80511 0.76762 1.20861 1.20909 1.16043 1.05531 0.73499 0.74772 0.74353 1.93403 1.46841 1.75746 1.83986 1.93387 1.64339 1.76256 1.67158 1.30598 1.15871 1.23631 1.02994 1.21555 0.93016 0.91584 0.99986 1.21660 0.97208 0.97934 0.95146 1.21835 0.96516 0.98722 0.93930 1.17630 1.03628 0.93871 0.80414 1.91473 1.87957 1.96293 1.35806 1.19568 0.96688 0.95740 0.93237 1.21180 1.05205 0.93988 1.00117 0.84469 0.92286 0.92307 0.86833 0.84526 0.88873 0.92930 0.91869 0.81968 0.79473 0.80160 0.88431 0.93385 0.87445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.36 -9.65 10.57 -51.44 -0.54 -10.19 16 3 C 0.47 15.88 7.96 71.24 0.57 16.45 16 4 O -0.54 -22.14 15.73 21.97 0.35 -21.79 16 5 C -0.13 -4.18 5.39 29.85 0.16 -4.02 16 6 C 0.14 6.13 4.60 86.38 0.40 6.52 16 7 N -0.84 -39.02 1.95 -343.46 -0.67 -39.69 16 8 C -0.30 -14.26 8.11 84.03 0.68 -13.58 16 9 H 0.11 4.66 7.91 -2.91 -0.02 4.64 16 10 C 0.00 0.05 5.01 84.86 0.43 0.47 16 11 N -0.88 -46.82 11.54 21.65 0.25 -46.57 16 12 Si 0.98 37.19 29.60 68.60 2.03 39.22 16 13 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 14 H -0.28 -10.79 7.11 99.48 0.71 -10.09 16 15 H -0.24 -7.90 7.11 99.48 0.71 -7.20 16 16 S 2.61 122.97 4.27 -56.49 -0.24 122.73 16 17 O -1.01 -54.50 16.95 -128.00 -2.17 -56.67 16 18 O -1.02 -51.85 15.44 -128.00 -1.98 -53.83 16 19 C -0.64 -23.59 5.83 22.26 0.13 -23.46 16 20 C -0.04 -1.21 8.31 22.27 0.19 -1.03 16 21 C -0.10 -2.00 10.04 22.26 0.22 -1.78 16 22 C -0.09 -1.84 10.03 22.31 0.22 -1.62 16 23 C 0.06 1.77 7.24 22.38 0.16 1.94 16 24 F -0.14 -3.59 16.42 44.97 0.74 -2.86 16 25 C -0.05 -1.71 5.88 -19.82 -0.12 -1.83 16 26 C -0.15 -5.04 8.62 71.24 0.61 -4.42 16 27 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 29 H 0.06 1.21 8.13 -2.38 -0.02 1.19 16 30 H 0.11 3.25 6.87 -2.39 -0.02 3.24 16 31 H 0.14 3.93 8.14 -2.39 -0.02 3.91 16 32 H 0.09 4.67 5.62 -2.39 -0.01 4.66 16 33 H 0.05 2.51 6.84 -2.39 -0.02 2.50 16 34 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 35 H 0.16 4.39 6.02 -2.91 -0.02 4.37 16 36 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 37 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 39 H 0.05 1.83 6.58 -2.38 -0.02 1.82 16 40 H 0.11 2.96 7.54 -2.39 -0.02 2.94 16 Total: -1.00 -73.53 353.89 3.70 -69.83 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 1.09 Total: 24.48 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 4.85 Total: -24.65 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -0.42 Total: -86.26 kcal Atomic # 8 Polarization: -138.14 SS G_CDS: -4.34 Total: -142.48 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.74 Total: -2.86 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.22 kcal Atomic # 16 Polarization: 122.97 SS G_CDS: -0.24 Total: 122.73 kcal Total: -73.53 3.70 -69.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867739039.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.737 kcal (2) G-P(sol) polarization free energy of solvation -73.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds