Wall clock time and date at job start Wed Apr 1 2020 03:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34226 * 117.00115 * 2 1 4 4 O 1.20822 * 119.99949 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99983 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47225 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47243 * 179.97438 * 6 5 3 8 8 C 1.36940 * 120.00263 * 275.00170 * 7 6 5 9 9 H 1.07998 * 120.00309 * 138.81891 * 8 7 6 10 10 C 1.38812 * 119.99659 * 318.81536 * 8 7 6 11 11 N 1.31622 * 119.99974 * 162.10725 * 10 8 7 12 12 Si 1.86798 * 120.00494 * 342.10898 * 10 8 7 13 13 H 1.48500 * 109.47258 * 95.36763 * 12 10 8 14 14 H 1.48500 * 109.47365 * 215.36919 * 12 10 8 15 15 H 1.48502 * 109.46910 * 335.37165 * 12 10 8 16 16 S 1.65599 * 120.00021 * 95.00450 * 7 6 5 17 17 O 1.42101 * 106.40512 * 161.41169 * 16 7 6 18 18 O 1.42100 * 106.40470 * 28.48589 * 16 7 6 19 19 C 1.76201 * 107.21537 * 274.94622 * 16 7 6 20 20 C 1.38220 * 120.01707 * 270.72129 * 19 16 7 21 21 C 1.50701 * 119.98360 * 359.97438 * 20 19 16 22 22 C 1.38216 * 120.03106 * 179.97438 * 20 19 16 23 23 C 1.38271 * 120.05149 * 0.02562 * 22 20 19 24 24 C 1.38174 * 120.02297 * 0.27413 * 23 22 20 25 25 C 1.38443 * 120.01208 * 90.70086 * 19 16 7 26 26 F 1.35101 * 120.02528 * 0.03975 * 25 19 16 27 27 H 1.09002 * 109.47153 * 300.00410 * 1 2 3 28 28 H 1.08998 * 109.46694 * 60.00369 * 1 2 3 29 29 H 1.08998 * 109.47046 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47693 * 59.99974 * 5 3 2 31 31 H 1.08999 * 109.47236 * 299.99802 * 5 3 2 32 32 H 1.09003 * 109.47178 * 60.00210 * 6 5 3 33 33 H 1.09004 * 109.47356 * 299.99790 * 6 5 3 34 34 H 0.96995 * 120.00418 * 180.02562 * 11 10 8 35 35 H 1.09004 * 109.47141 * 274.66075 * 21 20 19 36 36 H 1.08997 * 109.47267 * 34.66425 * 21 20 19 37 37 H 1.09002 * 109.47059 * 154.66558 * 21 20 19 38 38 H 1.08002 * 119.97754 * 179.97438 * 22 20 19 39 39 H 1.08001 * 119.98942 * 179.97438 * 23 22 20 40 40 H 1.08003 * 120.01669 * 179.72396 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4631 2.8186 0.0010 8 6 6.1514 2.7521 1.1830 9 1 7.0624 2.1755 1.2458 10 6 5.6781 3.4259 2.3005 11 7 6.1114 3.0980 3.4993 12 14 4.4261 4.7982 2.1032 13 1 3.0590 4.2532 2.3011 14 1 4.6881 5.8562 3.1118 15 1 4.5359 5.3760 0.7396 16 16 6.2847 2.9857 -1.4271 17 8 7.5809 3.4613 -1.0911 18 8 5.4114 3.6705 -2.3147 19 6 6.5051 1.3698 -2.0941 20 6 7.6231 0.6297 -1.7582 21 6 8.6539 1.2054 -0.8217 22 6 7.7961 -0.6381 -2.2808 23 6 6.8514 -1.1674 -3.1407 24 6 5.7360 -0.4270 -3.4828 25 6 5.5584 0.8408 -2.9546 26 9 4.4654 1.5634 -3.2839 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.9565 0.7805 -0.8891 31 1 3.9557 0.7809 0.8908 32 1 3.6101 3.2367 0.8893 33 1 3.6109 3.2356 -0.8907 34 1 5.7804 3.5685 4.2802 35 1 9.3607 1.8121 -1.3879 36 1 8.1596 1.8260 -0.0743 37 1 9.1872 0.3945 -0.3255 38 1 8.6702 -1.2154 -2.0181 39 1 6.9878 -2.1580 -3.5488 40 1 5.0005 -0.8388 -4.1579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867739678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:52 Heat of formation + Delta-G solvation = -176.019283 kcal Electronic energy + Delta-G solvation = -30215.001405 eV Core-core repulsion = 25843.858041 eV Total energy + Delta-G solvation = -4371.143364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -50.18054 -41.60237 -40.19425 -38.39274 -38.20168 -37.41748 -36.78978 -34.17249 -33.80088 -32.24821 -31.81240 -28.74017 -28.07314 -26.57378 -25.11293 -24.29100 -22.90942 -21.96518 -20.45683 -19.43474 -19.13893 -18.48533 -18.30331 -18.05691 -17.76148 -17.61572 -17.57828 -17.02752 -16.71278 -16.01275 -15.92044 -15.38663 -14.98587 -14.86109 -14.69865 -14.50910 -14.47295 -14.38072 -14.16665 -13.79498 -13.58617 -13.41953 -13.21837 -13.08578 -13.02099 -12.89394 -12.84220 -12.62199 -12.56986 -12.28001 -12.12031 -11.88599 -11.77757 -11.65279 -11.41414 -10.95198 -10.43645 -10.07784 -9.70250 -8.46617 -6.14787 -0.57667 -0.28303 0.11062 1.04739 1.19451 1.30061 1.38847 1.58918 2.14358 2.21875 2.45809 2.72042 2.94927 3.02131 3.33229 3.63917 3.71529 3.76992 3.90390 4.00475 4.13945 4.25230 4.29077 4.30314 4.32668 4.51840 4.53874 4.56292 4.67770 4.74886 4.83424 4.88883 4.96059 5.07506 5.20778 5.25245 5.30005 5.44994 5.66372 5.81571 6.21493 6.61243 7.04889 7.09268 8.65519 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.008955 B = 0.007256 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3126.142341 B = 3857.977148 C = 5683.259826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.358 6.358 3 C 0.472 3.528 4 O -0.538 6.538 5 C -0.123 4.123 6 C 0.116 3.884 7 N -0.872 5.872 8 C -0.302 4.302 9 H 0.108 0.892 10 C 0.045 3.955 11 N -0.891 5.891 12 Si 0.892 3.108 13 H -0.263 1.263 14 H -0.281 1.281 15 H -0.273 1.273 16 S 2.651 3.349 17 O -0.971 6.971 18 O -1.008 7.008 19 C -0.724 4.724 20 C 0.040 3.960 21 C -0.154 4.154 22 C -0.148 4.148 23 C -0.019 4.019 24 C -0.178 4.178 25 C 0.162 3.838 26 F -0.134 7.134 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.139 0.861 30 H 0.111 0.889 31 H 0.130 0.870 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.278 0.722 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.174 0.826 39 H 0.190 0.810 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.316 -15.127 -10.604 18.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.274 6.274 3 C 0.316 3.684 4 O -0.428 6.428 5 C -0.163 4.163 6 C -0.010 4.010 7 N -0.703 5.703 8 C -0.435 4.435 9 H 0.125 0.875 10 C -0.162 4.162 11 N -0.530 5.530 12 Si 0.720 3.280 13 H -0.190 1.190 14 H -0.208 1.208 15 H -0.198 1.198 16 S 2.751 3.249 17 O -0.961 6.961 18 O -0.998 6.998 19 C -0.814 4.814 20 C 0.039 3.961 21 C -0.211 4.211 22 C -0.166 4.166 23 C -0.037 4.037 24 C -0.197 4.197 25 C 0.142 3.858 26 F -0.112 7.112 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.157 0.843 30 H 0.129 0.871 31 H 0.148 0.852 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.122 0.878 38 H 0.191 0.809 39 H 0.207 0.793 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.290 -13.961 -10.872 17.843 hybrid contribution -1.220 0.992 0.261 1.594 sum -3.510 -12.970 -10.611 17.121 Atomic orbital electron populations 1.23625 0.74579 1.06039 1.02563 1.86502 1.25252 1.31962 1.83643 1.23764 0.91997 0.81531 0.71157 1.90644 1.67839 1.37447 1.46843 1.21789 0.87240 0.99791 1.07448 1.21319 0.81630 0.95247 1.02831 1.52982 1.11054 1.86590 1.19635 1.18738 1.10003 1.29408 0.85327 0.87520 1.25708 0.98297 0.97045 0.95142 1.69803 1.44550 1.40394 0.98209 0.86648 0.80871 0.82074 0.78421 1.18974 1.20777 1.19838 1.03312 0.73453 0.75008 0.73110 1.93492 1.39881 1.79448 1.83267 1.93462 1.67193 1.72570 1.66584 1.30547 1.06223 1.27066 1.17589 1.19774 0.90688 0.93822 0.91864 1.21540 0.98144 1.02495 0.98877 1.21702 1.02064 0.94099 0.98762 1.21848 0.89823 1.00317 0.91678 1.21618 1.02345 0.91975 1.03792 1.17534 0.82332 0.91353 0.94625 1.91603 1.51297 1.77703 1.90594 0.92201 0.91810 0.84269 0.87070 0.85205 0.91807 0.90275 0.91196 0.89241 0.90636 0.87825 0.80884 0.79291 0.81127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 10.56 113.37 1.20 1.71 16 2 O -0.36 -10.24 10.57 -51.38 -0.54 -10.79 16 3 C 0.47 16.79 7.96 71.23 0.57 17.36 16 4 O -0.54 -22.16 15.73 21.98 0.35 -21.81 16 5 C -0.12 -4.52 6.11 29.85 0.18 -4.33 16 6 C 0.12 5.24 3.89 86.38 0.34 5.57 16 7 N -0.87 -41.26 2.42 -343.45 -0.83 -42.10 16 8 C -0.30 -15.56 9.07 84.03 0.76 -14.79 16 9 H 0.11 5.58 5.88 -2.91 -0.02 5.57 16 10 C 0.04 2.41 5.38 84.86 0.46 2.87 16 11 N -0.89 -49.30 13.97 21.65 0.30 -49.00 16 12 Si 0.89 44.55 24.89 68.60 1.71 46.25 16 13 H -0.26 -12.78 6.75 99.48 0.67 -12.11 16 14 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 15 H -0.27 -14.11 7.11 99.48 0.71 -13.40 16 16 S 2.65 120.87 5.21 -56.49 -0.29 120.58 16 17 O -0.97 -47.17 13.56 -128.00 -1.74 -48.90 16 18 O -1.01 -49.98 14.84 -128.00 -1.90 -51.88 16 19 C -0.72 -25.88 5.94 22.31 0.13 -25.75 16 20 C 0.04 1.19 5.88 -19.87 -0.12 1.08 16 21 C -0.15 -4.85 8.36 71.24 0.60 -4.25 16 22 C -0.15 -2.90 9.68 22.27 0.22 -2.69 16 23 C -0.02 -0.30 10.04 22.26 0.22 -0.07 16 24 C -0.18 -3.75 10.03 22.31 0.22 -3.53 16 25 C 0.16 5.14 6.04 22.38 0.14 5.28 16 26 F -0.13 -4.84 15.07 44.97 0.68 -4.16 16 27 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 28 H 0.06 1.30 8.13 -2.39 -0.02 1.29 16 29 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.11 3.65 6.61 -2.39 -0.02 3.63 16 31 H 0.13 4.59 8.14 -2.39 -0.02 4.58 16 32 H 0.06 3.07 3.14 -2.39 -0.01 3.06 16 33 H 0.08 3.63 6.94 -2.38 -0.02 3.62 16 34 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 35 H 0.09 2.77 7.92 -2.39 -0.02 2.75 16 36 H 0.08 2.99 3.45 -2.39 -0.01 2.98 16 37 H 0.10 2.46 8.05 -2.39 -0.02 2.44 16 38 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 39 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 40 H 0.17 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -73.32 343.18 3.70 -69.62 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 1.06 Total: 13.73 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: 4.91 Total: -21.56 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -0.53 Total: -91.09 kcal Atomic # 8 Polarization: -129.55 SS G_CDS: -3.83 Total: -133.38 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.68 Total: -4.16 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.71 Total: 46.25 kcal Atomic # 16 Polarization: 120.87 SS G_CDS: -0.29 Total: 120.58 kcal Total: -73.32 3.70 -69.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867739678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.399 kcal (2) G-P(sol) polarization free energy of solvation -73.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds