Wall clock time and date at job start Wed Apr 1 2020 03:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34235 * 116.99918 * 2 1 4 4 O 1.20830 * 119.99687 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99925 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.46924 * 179.97438 * 5 3 2 7 7 N 1.46491 * 109.47236 * 186.69146 * 6 5 3 8 8 C 1.36939 * 120.00170 * 62.59430 * 7 6 5 9 9 H 1.08004 * 119.99500 * 312.23718 * 8 7 6 10 10 C 1.38808 * 120.00114 * 132.22969 * 8 7 6 11 11 N 1.31620 * 120.00371 * 329.47964 * 10 8 7 12 12 Si 1.86802 * 119.99923 * 149.47706 * 10 8 7 13 13 H 1.48507 * 109.46937 * 90.00084 * 12 10 8 14 14 H 1.48498 * 109.47273 * 209.99759 * 12 10 8 15 15 H 1.48497 * 109.47051 * 330.00595 * 12 10 8 16 16 S 1.65599 * 120.00072 * 242.31658 * 7 6 5 17 17 O 1.42100 * 106.40226 * 239.51155 * 16 7 6 18 18 O 1.42101 * 106.40472 * 12.43714 * 16 7 6 19 19 C 1.76210 * 107.21736 * 125.97448 * 16 7 6 20 20 C 1.38220 * 119.98165 * 110.62587 * 19 16 7 21 21 C 1.38444 * 119.96609 * 179.75063 * 20 19 16 22 22 F 1.35104 * 120.02088 * 180.25211 * 21 20 19 23 23 C 1.38477 * 119.95317 * 0.54724 * 21 20 19 24 24 C 1.38179 * 119.96956 * 359.70413 * 23 21 20 25 25 C 1.38219 * 119.98810 * 290.90149 * 19 16 7 26 26 C 1.50704 * 119.97158 * 359.97438 * 25 19 16 27 27 H 1.08995 * 109.47444 * 299.99457 * 1 2 3 28 28 H 1.09002 * 109.47430 * 59.99862 * 1 2 3 29 29 H 1.09006 * 109.46491 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46999 * 60.00827 * 5 3 2 31 31 H 1.08996 * 109.47804 * 300.00052 * 5 3 2 32 32 H 1.09003 * 109.46621 * 66.69256 * 6 5 3 33 33 H 1.08995 * 109.47522 * 306.69791 * 6 5 3 34 34 H 0.96998 * 119.99946 * 185.31391 * 11 10 8 35 35 H 1.07997 * 120.01965 * 0.02562 * 20 19 16 36 36 H 1.08002 * 120.01981 * 179.68595 * 23 21 20 37 37 H 1.08006 * 119.98538 * 180.02562 * 24 23 21 38 38 H 1.08996 * 109.47252 * 83.66392 * 26 25 19 39 39 H 1.09000 * 109.46614 * 203.66186 * 26 25 19 40 40 H 1.08994 * 109.47041 * 323.65987 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0000 2.7422 -0.0002 7 7 5.4540 2.8215 -0.1606 8 6 6.0438 2.3479 -1.3021 9 1 5.7785 1.3724 -1.6822 10 6 6.9825 3.1216 -1.9707 11 7 6.9007 4.4347 -1.9324 12 14 8.3619 2.2992 -2.9247 13 1 7.9244 2.0646 -4.3244 14 1 9.5588 3.1782 -2.9211 15 1 8.6990 1.0010 -2.2874 16 16 6.3837 3.4902 1.0356 17 8 7.0644 4.5900 0.4472 18 8 5.5432 3.6154 2.1745 19 6 7.6202 2.3078 1.4576 20 6 8.9431 2.5472 1.1363 21 6 9.9150 1.6204 1.4725 22 9 11.2090 1.8556 1.1636 23 6 9.5591 0.4493 2.1203 24 6 8.2352 0.2099 2.4357 25 6 7.2661 1.1388 2.1045 26 6 5.8226 0.8765 2.4491 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 3.9563 0.7808 -0.8892 31 1 3.9557 0.7810 0.8907 32 1 3.7127 3.2064 0.9432 33 1 3.5145 3.2642 -0.8246 34 1 7.5091 4.9741 -2.4613 35 1 9.2190 3.4588 0.6272 36 1 10.3157 -0.2768 2.3786 37 1 7.9574 -0.7032 2.9413 38 1 5.3135 0.4532 1.5834 39 1 5.7696 0.1744 3.2811 40 1 5.3409 1.8124 2.7322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867741178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:10 Heat of formation + Delta-G solvation = -156.532525 kcal Electronic energy + Delta-G solvation = -29672.265144 eV Core-core repulsion = 25301.966789 eV Total energy + Delta-G solvation = -4370.298355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -48.55336 -40.20954 -38.69746 -36.63030 -35.83630 -35.73528 -34.19768 -32.55700 -32.02215 -30.87461 -30.19890 -27.56687 -26.24418 -25.28524 -23.14807 -22.55735 -21.38132 -20.29710 -19.06019 -18.04643 -17.47571 -16.56772 -16.45107 -16.31093 -16.17226 -15.45457 -15.30729 -15.20564 -15.17164 -14.82274 -14.26906 -13.95750 -13.53249 -13.47491 -13.30088 -13.08078 -13.01999 -12.55528 -12.45453 -12.06182 -11.89476 -11.84937 -11.69777 -11.44850 -11.28309 -11.14402 -11.06435 -10.76012 -10.68576 -10.49838 -10.49068 -10.18909 -10.16998 -9.84381 -9.57661 -8.94709 -8.89481 -8.16990 -7.91002 -6.62576 -4.21993 1.20791 1.52763 1.86821 2.47760 2.92524 3.07145 3.19359 3.21241 3.72321 3.97752 4.51166 4.57488 4.67262 4.95822 4.97640 5.12618 5.13146 5.15220 5.19465 5.26826 5.41196 5.48334 5.53374 5.60083 5.82372 5.87004 5.97399 6.09240 6.17578 6.25010 6.32878 6.38356 6.46808 6.54699 6.66414 6.77453 6.80804 7.17889 7.23550 7.30037 7.99073 8.03866 8.71670 9.15360 10.33374 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011879 B = 0.004985 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.484348 B = 5615.523727 C = 6464.355583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.465 3.535 4 O -0.508 6.508 5 C -0.141 4.141 6 C 0.144 3.856 7 N -0.814 5.814 8 C -0.289 4.289 9 H 0.087 0.913 10 C 0.040 3.960 11 N -0.727 5.727 12 Si 0.892 3.108 13 H -0.270 1.270 14 H -0.275 1.275 15 H -0.260 1.260 16 S 2.544 3.456 17 O -0.937 6.937 18 O -1.027 7.027 19 C -0.608 4.608 20 C -0.055 4.055 21 C 0.059 3.941 22 F -0.146 7.146 23 C -0.119 4.119 24 C -0.123 4.123 25 C 0.005 3.995 26 C -0.176 4.176 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.281 0.719 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.275 -10.383 3.383 11.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.308 3.692 4 O -0.395 6.395 5 C -0.180 4.180 6 C 0.016 3.984 7 N -0.638 5.638 8 C -0.437 4.437 9 H 0.105 0.895 10 C -0.181 4.181 11 N -0.359 5.359 12 Si 0.716 3.284 13 H -0.195 1.195 14 H -0.199 1.199 15 H -0.184 1.184 16 S 2.645 3.355 17 O -0.926 6.926 18 O -1.015 7.015 19 C -0.685 4.685 20 C -0.074 4.074 21 C 0.039 3.961 22 F -0.125 7.125 23 C -0.138 4.138 24 C -0.142 4.142 25 C 0.004 3.996 26 C -0.231 4.231 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.136 0.864 31 H 0.125 0.875 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.163 0.837 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.374 -8.984 4.077 10.427 hybrid contribution 1.401 -1.029 -0.577 1.831 sum -1.973 -10.012 3.500 10.788 Atomic orbital electron populations 1.23193 0.77130 1.03177 1.02423 1.86536 1.22904 1.34223 1.84506 1.24067 0.92392 0.80974 0.71748 1.90658 1.67344 1.36269 1.45272 1.22220 0.85965 1.03213 1.06568 1.20952 0.81965 0.92166 1.03279 1.52697 1.09397 1.77997 1.23702 1.18948 1.22862 1.01086 1.00827 0.89503 1.25810 0.99913 0.94733 0.97691 1.70119 1.32207 1.04563 1.29039 0.86454 0.81264 0.80586 0.80134 1.19531 1.19940 1.18388 1.11973 0.73327 0.77370 0.72825 1.93521 1.74361 1.49986 1.74691 1.93194 1.67308 1.87082 1.53947 1.31828 1.13076 1.15933 1.07696 1.20934 0.91372 0.98859 0.96268 1.17815 0.78431 0.96876 1.02996 1.91458 1.34698 1.94807 1.91539 1.21144 0.97584 0.95973 0.99122 1.20956 0.91881 0.99573 1.01761 1.19516 0.96108 0.91582 0.92423 1.21827 0.92534 1.06351 1.02427 0.92087 0.92063 0.88549 0.86415 0.87525 0.89915 0.90022 0.90806 0.83684 0.85118 0.85172 0.89594 0.91164 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.89 10.57 -39.27 -0.41 -5.31 16 3 C 0.47 7.28 7.96 36.00 0.29 7.56 16 4 O -0.51 -9.24 15.63 -18.75 -0.29 -9.53 16 5 C -0.14 -2.19 5.83 -27.88 -0.16 -2.36 16 6 C 0.14 2.81 5.21 -4.04 -0.02 2.79 16 7 N -0.81 -17.85 2.90 -59.91 -0.17 -18.02 16 8 C -0.29 -6.47 8.50 -15.06 -0.13 -6.60 16 9 H 0.09 1.78 7.05 -52.48 -0.37 1.41 16 10 C 0.04 0.95 4.68 -17.43 -0.08 0.87 16 11 N -0.73 -18.72 11.03 55.49 0.61 -18.11 16 12 Si 0.89 18.59 29.65 -169.99 -5.04 13.55 16 13 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 14 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 15 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 16 S 2.54 59.82 4.77 -107.50 -0.51 59.30 16 17 O -0.94 -25.14 13.58 -57.17 -0.78 -25.91 16 18 O -1.03 -24.56 13.42 -57.17 -0.77 -25.33 16 19 C -0.61 -12.78 5.58 -39.59 -0.22 -13.00 16 20 C -0.05 -1.14 9.53 -39.51 -0.38 -1.52 16 21 C 0.06 1.09 7.30 -39.42 -0.29 0.80 16 22 F -0.15 -2.66 17.27 2.25 0.04 -2.62 16 23 C -0.12 -1.87 10.03 -39.51 -0.40 -2.27 16 24 C -0.12 -1.89 9.67 -39.59 -0.38 -2.27 16 25 C 0.00 0.09 5.87 -104.62 -0.61 -0.53 16 26 C -0.18 -2.77 9.08 36.01 0.33 -2.44 16 27 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 28 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.12 1.73 6.92 -51.93 -0.36 1.37 16 31 H 0.11 1.50 4.81 -51.93 -0.25 1.25 16 32 H 0.08 1.66 6.69 -51.93 -0.35 1.31 16 33 H 0.08 1.65 7.90 -51.93 -0.41 1.24 16 34 H 0.28 6.84 8.32 -40.82 -0.34 6.50 16 35 H 0.15 3.15 7.34 -52.49 -0.39 2.76 16 36 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.13 1.52 8.06 -52.48 -0.42 1.09 16 38 H 0.09 1.24 5.19 -51.93 -0.27 0.97 16 39 H 0.07 0.88 8.04 -51.93 -0.42 0.46 16 40 H 0.12 2.13 4.90 -51.93 -0.25 1.87 16 LS Contribution 347.60 15.07 5.24 5.24 Total: -1.00 -30.28 347.60 -7.39 -37.67 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.31 Total: 6.62 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -0.99 Total: -17.55 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.44 Total: -36.13 kcal Atomic # 8 Polarization: -63.83 SS G_CDS: -2.25 Total: -66.08 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.62 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.04 Total: 13.55 kcal Atomic # 16 Polarization: 59.82 SS G_CDS: -0.51 Total: 59.30 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.28 -7.39 -37.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867741178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.864 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds