Wall clock time and date at job start Wed Apr 1 2020 03:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34235 * 116.99918 * 2 1 4 4 O 1.20830 * 119.99687 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99925 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.46924 * 179.97438 * 5 3 2 7 7 N 1.46491 * 109.47236 * 186.69146 * 6 5 3 8 8 C 1.36939 * 120.00170 * 62.59430 * 7 6 5 9 9 H 1.08004 * 119.99500 * 312.23718 * 8 7 6 10 10 C 1.38808 * 120.00114 * 132.22969 * 8 7 6 11 11 N 1.31620 * 120.00371 * 329.47964 * 10 8 7 12 12 Si 1.86802 * 119.99923 * 149.47706 * 10 8 7 13 13 H 1.48507 * 109.46937 * 90.00084 * 12 10 8 14 14 H 1.48498 * 109.47273 * 209.99759 * 12 10 8 15 15 H 1.48497 * 109.47051 * 330.00595 * 12 10 8 16 16 S 1.65599 * 120.00072 * 242.31658 * 7 6 5 17 17 O 1.42100 * 106.40226 * 239.51155 * 16 7 6 18 18 O 1.42101 * 106.40472 * 12.43714 * 16 7 6 19 19 C 1.76210 * 107.21736 * 125.97448 * 16 7 6 20 20 C 1.38220 * 119.98165 * 110.62587 * 19 16 7 21 21 C 1.38444 * 119.96609 * 179.75063 * 20 19 16 22 22 F 1.35104 * 120.02088 * 180.25211 * 21 20 19 23 23 C 1.38477 * 119.95317 * 0.54724 * 21 20 19 24 24 C 1.38179 * 119.96956 * 359.70413 * 23 21 20 25 25 C 1.38219 * 119.98810 * 290.90149 * 19 16 7 26 26 C 1.50704 * 119.97158 * 359.97438 * 25 19 16 27 27 H 1.08995 * 109.47444 * 299.99457 * 1 2 3 28 28 H 1.09002 * 109.47430 * 59.99862 * 1 2 3 29 29 H 1.09006 * 109.46491 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46999 * 60.00827 * 5 3 2 31 31 H 1.08996 * 109.47804 * 300.00052 * 5 3 2 32 32 H 1.09003 * 109.46621 * 66.69256 * 6 5 3 33 33 H 1.08995 * 109.47522 * 306.69791 * 6 5 3 34 34 H 0.96998 * 119.99946 * 185.31391 * 11 10 8 35 35 H 1.07997 * 120.01965 * 0.02562 * 20 19 16 36 36 H 1.08002 * 120.01981 * 179.68595 * 23 21 20 37 37 H 1.08006 * 119.98538 * 180.02562 * 24 23 21 38 38 H 1.08996 * 109.47252 * 83.66392 * 26 25 19 39 39 H 1.09000 * 109.46614 * 203.66186 * 26 25 19 40 40 H 1.08994 * 109.47041 * 323.65987 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0000 2.7422 -0.0002 7 7 5.4540 2.8215 -0.1606 8 6 6.0438 2.3479 -1.3021 9 1 5.7785 1.3724 -1.6822 10 6 6.9825 3.1216 -1.9707 11 7 6.9007 4.4347 -1.9324 12 14 8.3619 2.2992 -2.9247 13 1 7.9244 2.0646 -4.3244 14 1 9.5588 3.1782 -2.9211 15 1 8.6990 1.0010 -2.2874 16 16 6.3837 3.4902 1.0356 17 8 7.0644 4.5900 0.4472 18 8 5.5432 3.6154 2.1745 19 6 7.6202 2.3078 1.4576 20 6 8.9431 2.5472 1.1363 21 6 9.9150 1.6204 1.4725 22 9 11.2090 1.8556 1.1636 23 6 9.5591 0.4493 2.1203 24 6 8.2352 0.2099 2.4357 25 6 7.2661 1.1388 2.1045 26 6 5.8226 0.8765 2.4491 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 3.9563 0.7808 -0.8892 31 1 3.9557 0.7810 0.8907 32 1 3.7127 3.2064 0.9432 33 1 3.5145 3.2642 -0.8246 34 1 7.5091 4.9741 -2.4613 35 1 9.2190 3.4588 0.6272 36 1 10.3157 -0.2768 2.3786 37 1 7.9574 -0.7032 2.9413 38 1 5.3135 0.4532 1.5834 39 1 5.7696 0.1744 3.2811 40 1 5.3409 1.8124 2.7322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867741178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:09 Heat of formation + Delta-G solvation = -175.281066 kcal Electronic energy + Delta-G solvation = -29673.078142 eV Core-core repulsion = 25301.966789 eV Total energy + Delta-G solvation = -4371.111353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.96063 -41.41206 -40.06414 -37.99684 -37.68996 -37.18702 -36.11658 -34.25404 -33.36669 -32.26668 -31.67912 -28.58933 -27.54213 -26.88927 -24.60195 -24.00485 -22.74558 -21.59040 -20.80252 -19.57815 -18.73661 -18.24254 -17.78961 -17.55167 -17.49977 -17.03121 -16.88854 -16.67527 -16.60474 -16.36304 -15.95107 -15.21114 -15.02547 -14.74710 -14.61715 -14.47046 -14.39588 -13.96534 -13.79277 -13.67102 -13.31306 -13.14546 -13.01694 -12.88514 -12.75330 -12.65047 -12.53634 -12.36409 -12.33041 -12.13429 -11.96100 -11.73082 -11.53103 -11.44800 -11.16713 -10.68003 -10.31296 -9.64637 -9.54725 -8.42148 -6.03146 -0.22340 0.11525 0.15552 1.25279 1.40716 1.49132 1.55434 1.81773 2.23918 2.36405 2.80030 2.93111 3.19014 3.29940 3.67676 3.87258 3.89121 3.94926 4.07215 4.15134 4.25205 4.40140 4.41279 4.42732 4.55970 4.59222 4.73382 4.77711 4.85320 4.93608 4.95255 5.01140 5.11534 5.16531 5.33969 5.43274 5.48681 5.49862 5.58530 5.89722 6.27357 6.80426 6.96992 7.40502 8.55456 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011879 B = 0.004985 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.484348 B = 5615.523727 C = 6464.355583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.472 3.528 4 O -0.541 6.541 5 C -0.131 4.131 6 C 0.142 3.858 7 N -0.821 5.821 8 C -0.289 4.289 9 H 0.112 0.888 10 C 0.004 3.996 11 N -0.777 5.777 12 Si 0.937 3.063 13 H -0.253 1.253 14 H -0.292 1.292 15 H -0.249 1.249 16 S 2.549 3.451 17 O -0.984 6.984 18 O -1.041 7.041 19 C -0.631 4.631 20 C -0.082 4.082 21 C 0.045 3.955 22 F -0.148 7.148 23 C -0.101 4.101 24 C -0.107 4.107 25 C -0.001 4.001 26 C -0.179 4.179 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.277 0.723 35 H 0.116 0.884 36 H 0.175 0.825 37 H 0.184 0.816 38 H 0.100 0.900 39 H 0.111 0.889 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.314 -15.191 4.421 16.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.316 3.684 4 O -0.431 6.431 5 C -0.169 4.169 6 C 0.015 3.985 7 N -0.646 5.646 8 C -0.437 4.437 9 H 0.129 0.871 10 C -0.213 4.213 11 N -0.411 5.411 12 Si 0.759 3.241 13 H -0.177 1.177 14 H -0.218 1.218 15 H -0.172 1.172 16 S 2.654 3.346 17 O -0.973 6.973 18 O -1.030 7.030 19 C -0.713 4.713 20 C -0.103 4.103 21 C 0.025 3.975 22 F -0.127 7.127 23 C -0.119 4.119 24 C -0.125 4.125 25 C -0.003 4.003 26 C -0.235 4.235 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.134 0.866 36 H 0.193 0.807 37 H 0.201 0.799 38 H 0.118 0.882 39 H 0.130 0.870 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.472 -13.799 5.085 15.111 hybrid contribution 1.373 0.384 -0.773 1.622 sum -2.099 -13.416 4.312 14.247 Atomic orbital electron populations 1.23552 0.75025 1.05694 1.02417 1.86507 1.24861 1.32486 1.83812 1.23939 0.92291 0.81196 0.70976 1.90656 1.68000 1.37517 1.46958 1.22025 0.86408 1.00247 1.08236 1.20927 0.80667 0.95015 1.01910 1.52536 1.10062 1.78486 1.23543 1.19380 1.22253 1.01637 1.00388 0.87098 1.26561 1.01567 0.94814 0.98372 1.70214 1.33520 1.06157 1.31186 0.85752 0.78510 0.79706 0.80108 1.17692 1.21818 1.17230 1.11083 0.73484 0.77298 0.72700 1.93475 1.75427 1.52684 1.75673 1.93186 1.67917 1.87608 1.54242 1.31270 1.12101 1.17166 1.10808 1.20798 0.92430 0.99080 0.97948 1.17993 0.77906 0.97706 1.03917 1.91449 1.34618 1.94967 1.91697 1.21670 0.99005 0.94892 0.96369 1.21513 0.90747 1.00253 0.99969 1.19921 0.98090 0.90818 0.91432 1.21888 0.90908 1.06112 1.04551 0.92074 0.92230 0.84760 0.84956 0.85487 0.91196 0.91674 0.91329 0.86578 0.80726 0.79913 0.88224 0.86990 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.36 -8.74 10.57 -51.46 -0.54 -9.28 16 3 C 0.47 14.14 7.96 71.23 0.57 14.71 16 4 O -0.54 -19.66 15.63 21.95 0.34 -19.32 16 5 C -0.13 -3.88 5.83 29.85 0.17 -3.70 16 6 C 0.14 5.64 5.21 86.38 0.45 6.09 16 7 N -0.82 -36.70 2.90 -343.46 -1.00 -37.70 16 8 C -0.29 -12.98 8.50 84.03 0.71 -12.26 16 9 H 0.11 4.34 7.05 -2.91 -0.02 4.32 16 10 C 0.00 0.21 4.68 84.86 0.40 0.61 16 11 N -0.78 -42.25 11.03 21.65 0.24 -42.01 16 12 Si 0.94 38.36 29.65 68.60 2.03 40.39 16 13 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 14 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 15 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 16 S 2.55 124.42 4.77 -56.49 -0.27 124.15 16 17 O -0.98 -56.40 13.58 -128.00 -1.74 -58.13 16 18 O -1.04 -51.51 13.42 -128.00 -1.72 -53.23 16 19 C -0.63 -26.49 5.58 22.26 0.12 -26.36 16 20 C -0.08 -3.51 9.53 22.31 0.21 -3.29 16 21 C 0.04 1.58 7.30 22.38 0.16 1.75 16 22 F -0.15 -5.25 17.27 44.97 0.78 -4.47 16 23 C -0.10 -2.69 10.03 22.31 0.22 -2.46 16 24 C -0.11 -2.68 9.67 22.26 0.22 -2.47 16 25 C 0.00 -0.04 5.87 -19.86 -0.12 -0.16 16 26 C -0.18 -5.02 9.08 71.24 0.65 -4.38 16 27 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 28 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 29 H 0.13 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.13 3.56 6.92 -2.39 -0.02 3.54 16 31 H 0.13 3.23 4.81 -2.39 -0.01 3.22 16 32 H 0.07 2.92 6.69 -2.39 -0.02 2.90 16 33 H 0.06 2.75 7.90 -2.39 -0.02 2.73 16 34 H 0.28 14.43 8.32 -92.71 -0.77 13.66 16 35 H 0.12 5.46 7.34 -2.91 -0.02 5.44 16 36 H 0.18 3.15 8.06 -2.91 -0.02 3.12 16 37 H 0.18 2.74 8.06 -2.91 -0.02 2.71 16 38 H 0.10 2.49 5.19 -2.39 -0.01 2.48 16 39 H 0.11 2.17 8.04 -2.39 -0.02 2.15 16 40 H 0.09 3.13 4.90 -2.39 -0.01 3.12 16 Total: -1.00 -70.94 347.60 4.19 -66.75 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 1.10 Total: 23.13 kcal Atomic # 6 Polarization: -35.25 SS G_CDS: 4.97 Total: -30.28 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -0.76 Total: -79.71 kcal Atomic # 8 Polarization: -136.31 SS G_CDS: -3.66 Total: -139.97 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.78 Total: -4.47 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Atomic # 16 Polarization: 124.42 SS G_CDS: -0.27 Total: 124.15 kcal Total: -70.94 4.19 -66.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867741178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.530 kcal (2) G-P(sol) polarization free energy of solvation -70.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds