Wall clock time and date at job start Wed Apr 1 2020 03:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86801 * 120.00165 * 2 1 4 4 H 1.48506 * 109.46928 * 82.85574 * 3 2 1 5 5 H 1.48503 * 109.47292 * 202.85104 * 3 2 1 6 6 H 1.48497 * 109.47471 * 322.85667 * 3 2 1 7 7 C 1.40312 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00137 * 25.95094 * 7 2 1 9 9 C 1.40514 * 119.99700 * 205.94560 * 7 2 1 10 10 C 1.44192 * 123.72223 * 11.23738 * 9 7 2 11 11 C 1.32750 * 114.43375 * 179.97438 * 10 9 7 12 12 S 1.75469 * 111.37306 * 359.97438 * 11 10 9 13 13 C 1.39588 * 123.71571 * 190.92972 * 9 7 2 14 14 C 1.46175 * 125.23188 * 0.02663 * 13 9 7 15 15 O 1.21773 * 120.00063 * 359.97438 * 14 13 9 16 16 N 1.34777 * 119.99788 * 179.97438 * 14 13 9 17 17 C 1.39760 * 119.99887 * 185.04836 * 16 14 13 18 18 C 1.38921 * 120.07341 * 211.60513 * 17 16 14 19 19 C 1.38101 * 119.92334 * 179.74242 * 18 17 16 20 20 C 1.38291 * 120.07979 * 0.50113 * 19 18 17 21 21 C 1.50697 * 119.93253 * 179.74739 * 20 19 18 22 22 O 1.42898 * 113.00176 * 200.36058 * 21 20 19 23 23 C 1.54031 * 113.81327 * 68.52773 * 21 20 19 24 24 O 1.44452 * 85.42638 * 223.24242 * 23 21 20 25 25 C 1.44173 * 93.37908 * 24.09127 * 24 23 21 26 26 C 1.38299 * 120.14260 * 359.77159 * 20 19 18 27 27 C 1.38097 * 120.07831 * 359.97438 * 26 20 19 28 28 H 0.96997 * 120.00342 * 174.89274 * 1 2 3 29 29 H 1.07997 * 122.77883 * 359.93200 * 10 9 7 30 30 H 1.08004 * 124.31310 * 179.97438 * 11 10 9 31 31 H 0.97001 * 120.00301 * 5.04178 * 16 14 13 32 32 H 1.07998 * 120.04247 * 359.97438 * 18 17 16 33 33 H 1.08008 * 119.96368 * 180.25198 * 19 18 17 34 34 H 0.96705 * 113.99587 * 179.97438 * 22 21 20 35 35 H 1.08994 * 113.86721 * 337.34956 * 23 21 20 36 36 H 1.09000 * 113.86390 * 109.05359 * 23 21 20 37 37 H 1.09004 * 113.86674 * 221.77342 * 25 24 23 38 38 H 1.09003 * 113.86468 * 90.06013 * 25 24 23 39 39 H 1.07999 * 119.95895 * 179.97438 * 26 20 19 40 40 H 1.08003 * 120.03522 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3371 2.1334 1.3893 5 1 3.6053 1.4013 -0.5437 6 1 1.5215 2.6045 -0.8453 7 6 2.0079 -1.2152 -0.0005 8 1 1.5495 -2.1031 -0.4102 9 6 3.3068 -1.2768 0.5319 10 6 3.9069 -0.2165 1.3031 11 6 5.1427 -0.4698 1.7163 12 16 5.6820 -2.0535 1.1871 13 6 4.1562 -2.3737 0.3776 14 6 3.8274 -3.5993 -0.3479 15 8 2.7372 -3.7200 -0.8768 16 7 4.7310 -4.5958 -0.4315 17 6 4.4585 -5.7225 -1.2123 18 6 4.9665 -6.9626 -0.8463 19 6 4.6909 -8.0748 -1.6171 20 6 3.9187 -7.9534 -2.7579 21 6 3.6247 -9.1683 -3.5997 22 8 3.2369 -8.8414 -4.9357 23 6 2.6973 -10.1898 -2.9150 24 8 3.6076 -11.1869 -3.4286 25 6 4.7084 -10.2599 -3.5161 26 6 3.4161 -6.7193 -3.1283 27 6 3.6835 -5.6040 -2.3592 28 1 -0.4850 -0.8367 -0.0748 29 1 3.3937 0.7074 1.5255 30 1 5.7402 0.2120 2.3035 31 1 5.5705 -4.5310 0.0501 32 1 5.5732 -7.0575 0.0421 33 1 5.0822 -9.0400 -1.3309 34 1 3.0451 -9.6109 -5.4890 35 1 2.6892 -10.1184 -1.8274 36 1 1.6982 -10.2380 -3.3482 37 1 5.3010 -10.3635 -4.4251 38 1 5.3158 -10.2100 -2.6124 39 1 2.8138 -6.6279 -4.0200 40 1 3.2910 -4.6405 -2.6492 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868368708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:07 Heat of formation + Delta-G solvation = -38.194479 kcal Electronic energy + Delta-G solvation = -26578.985699 eV Core-core repulsion = 22644.588092 eV Total energy + Delta-G solvation = -3934.397608 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.087 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.28877 -39.63742 -37.79621 -36.39708 -35.83920 -34.00274 -33.59024 -30.97425 -30.58225 -29.23927 -27.55726 -26.93849 -26.12310 -23.33776 -22.35720 -21.81047 -20.95603 -19.92421 -19.34316 -18.20404 -17.65999 -17.17012 -16.72017 -16.29951 -16.20059 -15.70993 -15.12169 -14.95499 -14.45992 -14.22561 -13.82456 -13.74525 -13.63300 -13.48680 -13.35410 -13.10197 -12.67926 -12.64672 -12.33438 -12.17954 -12.03873 -11.78510 -11.37151 -11.00713 -10.93775 -10.76989 -10.52639 -10.35307 -10.11641 -9.95586 -9.71761 -9.63966 -9.39143 -8.80607 -8.50679 -7.95683 -7.79504 -7.59444 -7.50570 -4.79228 1.40930 1.61567 1.84578 2.72877 2.82894 3.05133 3.22602 3.26549 3.38159 3.42277 3.65344 3.71510 3.75628 3.83063 4.20066 4.39488 4.56990 4.74904 4.89834 4.97088 5.12877 5.15327 5.22267 5.47458 5.57699 5.63000 5.66049 5.72773 5.76559 5.89032 5.98147 6.20108 6.44706 6.45681 6.68704 6.72029 6.76690 6.92560 6.99330 7.09313 7.27338 7.30764 7.44843 7.93277 8.11454 8.27505 8.51856 9.29218 9.48217 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.018721 B = 0.002608 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.313224 B =10735.139241 C =11837.791082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.033 3.967 3 Si 1.070 2.930 4 H -0.271 1.271 5 H -0.257 1.257 6 H -0.281 1.281 7 C -0.413 4.413 8 H 0.120 0.880 9 C 0.110 3.890 10 C -0.167 4.167 11 C -0.166 4.166 12 S -0.027 6.027 13 C -0.449 4.449 14 C 0.594 3.406 15 O -0.547 6.547 16 N -0.689 5.689 17 C 0.188 3.812 18 C -0.165 4.165 19 C -0.090 4.090 20 C -0.126 4.126 21 C 0.125 3.875 22 O -0.529 6.529 23 C 0.011 3.989 24 O -0.384 6.384 25 C 0.006 3.994 26 C -0.067 4.067 27 C -0.129 4.129 28 H 0.299 0.701 29 H 0.125 0.875 30 H 0.147 0.853 31 H 0.401 0.599 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.384 0.616 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.127 0.873 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.065 -11.200 -3.063 14.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.194 4.194 3 Si 0.895 3.105 4 H -0.198 1.198 5 H -0.181 1.181 6 H -0.208 1.208 7 C -0.443 4.443 8 H 0.138 0.862 9 C 0.100 3.900 10 C -0.200 4.200 11 C -0.301 4.301 12 S 0.228 5.772 13 C -0.567 4.567 14 C 0.394 3.606 15 O -0.430 6.430 16 N -0.332 5.332 17 C 0.091 3.909 18 C -0.186 4.186 19 C -0.108 4.108 20 C -0.127 4.127 21 C 0.083 3.917 22 O -0.334 6.334 23 C -0.066 4.066 24 O -0.303 6.303 25 C -0.071 4.071 26 C -0.085 4.085 27 C -0.150 4.150 28 H 0.112 0.888 29 H 0.142 0.858 30 H 0.164 0.836 31 H 0.236 0.764 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.232 0.768 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.145 0.855 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.348 -10.084 -3.016 13.434 hybrid contribution -0.812 -1.267 0.118 1.510 sum 7.535 -11.351 -2.897 13.929 Atomic orbital electron populations 1.70434 1.08397 1.34551 1.24423 1.27837 0.95751 1.05356 0.90464 0.83759 0.76363 0.72507 0.77880 1.19773 1.18105 1.20758 1.21336 0.97145 0.98769 1.27007 0.86226 1.17822 0.92245 0.89042 0.90862 1.21440 0.95841 1.00184 1.02533 1.24934 0.99338 1.00148 1.05662 1.82777 1.20538 1.14342 1.59496 1.22042 0.99257 1.03494 1.31898 1.16866 0.82810 0.81235 0.79657 1.90657 1.22668 1.80159 1.49525 1.43677 1.21594 1.18323 1.49614 1.17918 0.96009 0.86710 0.90253 1.20766 1.05574 0.90962 1.01303 1.20545 0.97978 0.97984 0.94317 1.19095 1.03176 0.93554 0.96874 1.22533 0.92921 0.92602 0.83614 1.86516 1.89342 1.36626 1.20914 1.24980 0.95889 0.85186 1.00553 1.89709 1.22684 1.32990 1.84909 1.25008 0.92047 0.86539 1.03466 1.20862 0.97752 0.91165 0.98763 1.21377 1.00178 1.00382 0.93063 0.88819 0.85771 0.83582 0.76420 0.85796 0.86068 0.76757 0.88781 0.88280 0.88389 0.88699 0.85478 0.84052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.69 13.64 55.57 0.76 -17.93 16 2 C 0.03 0.81 5.45 -17.28 -0.09 0.71 16 3 Si 1.07 21.41 24.85 -169.99 -4.22 17.19 16 4 H -0.27 -4.97 6.68 56.52 0.38 -4.60 16 5 H -0.26 -5.09 6.65 56.52 0.38 -4.71 16 6 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.41 -10.84 9.06 -37.94 -0.34 -11.19 16 8 H 0.12 3.46 5.82 -52.49 -0.31 3.15 16 9 C 0.11 2.75 5.51 -106.20 -0.59 2.16 16 10 C -0.17 -3.61 7.76 -39.12 -0.30 -3.92 16 11 C -0.17 -3.18 11.06 28.86 0.32 -2.86 16 12 S -0.03 -0.53 22.26 -107.50 -2.39 -2.92 16 13 C -0.45 -10.68 6.50 -35.89 -0.23 -10.92 16 14 C 0.59 14.02 7.51 -13.07 -0.10 13.92 16 15 O -0.55 -14.44 11.89 5.12 0.06 -14.38 16 16 N -0.69 -13.26 5.33 -11.19 -0.06 -13.32 16 17 C 0.19 3.35 6.31 -83.74 -0.53 2.82 16 18 C -0.16 -2.36 9.96 -39.38 -0.39 -2.75 16 19 C -0.09 -1.12 9.07 -39.61 -0.36 -1.48 16 20 C -0.13 -1.70 5.27 -104.58 -0.55 -2.25 16 21 C 0.13 1.38 1.83 -90.69 -0.17 1.22 16 22 O -0.53 -5.76 12.50 -45.86 -0.57 -6.33 16 23 C 0.01 0.11 8.53 37.64 0.32 0.43 16 24 O -0.38 -4.16 12.41 -45.86 -0.57 -4.73 16 25 C 0.01 0.06 8.36 37.65 0.31 0.37 16 26 C -0.07 -1.06 9.43 -39.61 -0.37 -1.43 16 27 C -0.13 -2.39 8.66 -39.38 -0.34 -2.73 16 28 H 0.30 7.29 8.73 -40.82 -0.36 6.93 16 29 H 0.13 2.51 3.63 -52.49 -0.19 2.32 16 30 H 0.15 2.22 8.06 -52.48 -0.42 1.80 16 31 H 0.40 6.78 7.90 -40.82 -0.32 6.45 16 32 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 33 H 0.12 1.16 6.15 -52.48 -0.32 0.83 16 34 H 0.38 2.68 8.95 45.56 0.41 3.09 16 35 H 0.09 0.91 8.03 -51.93 -0.42 0.49 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 0.78 5.92 -51.93 -0.31 0.47 16 39 H 0.13 1.94 7.41 -52.49 -0.39 1.55 16 40 H 0.14 2.98 6.30 -52.48 -0.33 2.65 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -29.56 344.83 -8.29 -37.84 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -3.07 Total: 17.28 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -3.41 Total: -17.89 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.70 Total: -31.26 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -1.08 Total: -25.44 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.22 Total: 17.19 kcal Atomic # 16 Polarization: -0.53 SS G_CDS: -2.39 Total: -2.92 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.56 -8.29 -37.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868368708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.352 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds