Wall clock time and date at job start Wed Apr 1 2020 03:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86801 * 120.00165 * 2 1 4 4 H 1.48506 * 109.46928 * 82.85574 * 3 2 1 5 5 H 1.48503 * 109.47292 * 202.85104 * 3 2 1 6 6 H 1.48497 * 109.47471 * 322.85667 * 3 2 1 7 7 C 1.40312 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00137 * 25.95094 * 7 2 1 9 9 C 1.40514 * 119.99700 * 205.94560 * 7 2 1 10 10 C 1.44192 * 123.72223 * 11.23738 * 9 7 2 11 11 C 1.32750 * 114.43375 * 179.97438 * 10 9 7 12 12 S 1.75469 * 111.37306 * 359.97438 * 11 10 9 13 13 C 1.39588 * 123.71571 * 190.92972 * 9 7 2 14 14 C 1.46175 * 125.23188 * 0.02663 * 13 9 7 15 15 O 1.21773 * 120.00063 * 359.97438 * 14 13 9 16 16 N 1.34777 * 119.99788 * 179.97438 * 14 13 9 17 17 C 1.39760 * 119.99887 * 185.04836 * 16 14 13 18 18 C 1.38921 * 120.07341 * 211.60513 * 17 16 14 19 19 C 1.38101 * 119.92334 * 179.74242 * 18 17 16 20 20 C 1.38291 * 120.07979 * 0.50113 * 19 18 17 21 21 C 1.50697 * 119.93253 * 179.74739 * 20 19 18 22 22 O 1.42898 * 113.00176 * 200.36058 * 21 20 19 23 23 C 1.54031 * 113.81327 * 68.52773 * 21 20 19 24 24 O 1.44452 * 85.42638 * 223.24242 * 23 21 20 25 25 C 1.44173 * 93.37908 * 24.09127 * 24 23 21 26 26 C 1.38299 * 120.14260 * 359.77159 * 20 19 18 27 27 C 1.38097 * 120.07831 * 359.97438 * 26 20 19 28 28 H 0.96997 * 120.00342 * 174.89274 * 1 2 3 29 29 H 1.07997 * 122.77883 * 359.93200 * 10 9 7 30 30 H 1.08004 * 124.31310 * 179.97438 * 11 10 9 31 31 H 0.97001 * 120.00301 * 5.04178 * 16 14 13 32 32 H 1.07998 * 120.04247 * 359.97438 * 18 17 16 33 33 H 1.08008 * 119.96368 * 180.25198 * 19 18 17 34 34 H 0.96705 * 113.99587 * 179.97438 * 22 21 20 35 35 H 1.08994 * 113.86721 * 337.34956 * 23 21 20 36 36 H 1.09000 * 113.86390 * 109.05359 * 23 21 20 37 37 H 1.09004 * 113.86674 * 221.77342 * 25 24 23 38 38 H 1.09003 * 113.86468 * 90.06013 * 25 24 23 39 39 H 1.07999 * 119.95895 * 179.97438 * 26 20 19 40 40 H 1.08003 * 120.03522 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3371 2.1334 1.3893 5 1 3.6053 1.4013 -0.5437 6 1 1.5215 2.6045 -0.8453 7 6 2.0079 -1.2152 -0.0005 8 1 1.5495 -2.1031 -0.4102 9 6 3.3068 -1.2768 0.5319 10 6 3.9069 -0.2165 1.3031 11 6 5.1427 -0.4698 1.7163 12 16 5.6820 -2.0535 1.1871 13 6 4.1562 -2.3737 0.3776 14 6 3.8274 -3.5993 -0.3479 15 8 2.7372 -3.7200 -0.8768 16 7 4.7310 -4.5958 -0.4315 17 6 4.4585 -5.7225 -1.2123 18 6 4.9665 -6.9626 -0.8463 19 6 4.6909 -8.0748 -1.6171 20 6 3.9187 -7.9534 -2.7579 21 6 3.6247 -9.1683 -3.5997 22 8 3.2369 -8.8414 -4.9357 23 6 2.6973 -10.1898 -2.9150 24 8 3.6076 -11.1869 -3.4286 25 6 4.7084 -10.2599 -3.5161 26 6 3.4161 -6.7193 -3.1283 27 6 3.6835 -5.6040 -2.3592 28 1 -0.4850 -0.8367 -0.0748 29 1 3.3937 0.7074 1.5255 30 1 5.7402 0.2120 2.3035 31 1 5.5705 -4.5310 0.0501 32 1 5.5732 -7.0575 0.0421 33 1 5.0822 -9.0400 -1.3309 34 1 3.0451 -9.6109 -5.4890 35 1 2.6892 -10.1184 -1.8274 36 1 1.6982 -10.2380 -3.3482 37 1 5.3010 -10.3635 -4.4251 38 1 5.3158 -10.2100 -2.6124 39 1 2.8138 -6.6279 -4.0200 40 1 3.2910 -4.6405 -2.6492 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868368708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:06 Heat of formation + Delta-G solvation = -60.475702 kcal Electronic energy + Delta-G solvation = -26579.951886 eV Core-core repulsion = 22644.588092 eV Total energy + Delta-G solvation = -3935.363794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.087 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.17216 -41.12239 -39.28780 -38.05869 -36.71788 -35.59015 -35.36724 -32.22168 -31.83615 -30.87731 -28.90736 -27.69871 -27.60201 -24.67263 -23.74529 -23.27278 -22.38005 -21.22818 -20.97219 -19.84559 -18.72867 -18.34061 -18.01473 -17.68673 -17.02720 -16.74861 -16.63282 -16.49013 -16.06905 -15.39786 -15.23549 -15.16939 -15.02299 -14.65692 -14.60175 -14.36844 -14.13534 -13.91573 -13.80690 -13.58555 -13.46526 -13.04089 -12.93407 -12.63174 -12.23117 -12.04701 -11.78574 -11.69868 -11.54345 -11.34144 -11.05430 -10.94300 -10.76906 -10.43326 -9.93468 -9.77506 -9.57330 -9.22629 -8.96590 -6.66638 -0.00574 0.30143 0.38781 1.15519 1.21928 1.43282 1.57936 1.68282 1.76998 2.04355 2.26805 2.31360 2.49482 2.71082 2.95010 3.10957 3.42748 3.66392 3.89492 3.95818 3.99947 4.16929 4.28658 4.33881 4.40504 4.50309 4.54816 4.59113 4.75629 4.78700 4.87790 4.98051 5.04628 5.11315 5.16939 5.24523 5.25200 5.37402 5.49426 5.51987 5.59896 6.02360 6.09215 6.24754 6.50214 6.65069 6.75288 7.51629 7.59509 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.018721 B = 0.002608 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.313224 B =10735.139241 C =11837.791082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.007 3.993 3 Si 1.104 2.896 4 H -0.234 1.234 5 H -0.253 1.253 6 H -0.274 1.274 7 C -0.463 4.463 8 H 0.071 0.929 9 C 0.099 3.901 10 C -0.203 4.203 11 C -0.143 4.143 12 S 0.040 5.960 13 C -0.482 4.482 14 C 0.584 3.416 15 O -0.588 6.588 16 N -0.677 5.677 17 C 0.153 3.847 18 C -0.150 4.150 19 C -0.077 4.077 20 C -0.114 4.114 21 C 0.116 3.884 22 O -0.546 6.546 23 C 0.013 3.987 24 O -0.394 6.394 25 C 0.014 3.986 26 C -0.079 4.079 27 C -0.155 4.155 28 H 0.286 0.714 29 H 0.140 0.860 30 H 0.199 0.801 31 H 0.413 0.587 32 H 0.155 0.845 33 H 0.167 0.833 34 H 0.400 0.600 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.122 0.878 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.908 -12.559 -1.488 17.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.214 4.214 3 Si 0.921 3.079 4 H -0.159 1.159 5 H -0.178 1.178 6 H -0.201 1.201 7 C -0.493 4.493 8 H 0.089 0.911 9 C 0.089 3.911 10 C -0.235 4.235 11 C -0.278 4.278 12 S 0.297 5.703 13 C -0.600 4.600 14 C 0.384 3.616 15 O -0.473 6.473 16 N -0.321 5.321 17 C 0.057 3.943 18 C -0.171 4.171 19 C -0.095 4.095 20 C -0.115 4.115 21 C 0.074 3.926 22 O -0.354 6.354 23 C -0.063 4.063 24 O -0.313 6.313 25 C -0.062 4.062 26 C -0.097 4.097 27 C -0.176 4.176 28 H 0.097 0.903 29 H 0.157 0.843 30 H 0.216 0.784 31 H 0.250 0.750 32 H 0.173 0.827 33 H 0.184 0.816 34 H 0.252 0.748 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.140 0.860 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.217 -11.518 -1.444 16.852 hybrid contribution -1.831 -1.175 -0.464 2.225 sum 10.386 -12.693 -1.907 16.511 Atomic orbital electron populations 1.70516 1.08929 1.33573 1.27234 1.29102 0.95745 1.07727 0.88865 0.83414 0.75316 0.69111 0.80020 1.15922 1.17761 1.20063 1.21119 0.99084 0.98344 1.30775 0.91089 1.18245 0.91858 0.90682 0.90347 1.21436 0.97287 1.00478 1.04342 1.25594 0.98509 1.00197 1.03480 1.82417 1.16424 1.14166 1.57302 1.22650 1.02154 1.03359 1.31832 1.17188 0.82898 0.82313 0.79217 1.90651 1.24631 1.81161 1.50867 1.43325 1.21154 1.17999 1.49599 1.18167 0.98002 0.87659 0.90450 1.21113 1.04356 0.89528 1.02068 1.21010 0.96383 0.99209 0.92907 1.19480 1.01426 0.93306 0.97294 1.22672 0.94770 0.91567 0.83551 1.86480 1.89540 1.38188 1.21201 1.25029 0.96123 0.84267 1.00926 1.89714 1.23266 1.33309 1.85053 1.25133 0.91492 0.84470 1.05106 1.20854 0.98524 0.91743 0.98618 1.21150 1.01929 0.99562 0.94939 0.90302 0.84255 0.78398 0.75037 0.82688 0.81618 0.74828 0.88086 0.87577 0.86915 0.86915 0.85979 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -41.42 13.64 21.89 0.30 -41.12 16 2 C 0.01 0.35 5.45 85.37 0.47 0.81 16 3 Si 1.10 43.16 24.85 68.60 1.70 44.87 16 4 H -0.23 -7.79 6.68 99.48 0.66 -7.12 16 5 H -0.25 -9.69 6.65 99.48 0.66 -9.02 16 6 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 7 C -0.46 -26.34 9.06 23.33 0.21 -26.12 16 8 H 0.07 4.62 5.82 -2.91 -0.02 4.61 16 9 C 0.10 5.10 5.51 -20.89 -0.12 4.98 16 10 C -0.20 -8.46 7.76 22.61 0.18 -8.29 16 11 C -0.14 -4.91 11.06 66.64 0.74 -4.17 16 12 S 0.04 1.45 22.26 -56.49 -1.26 0.19 16 13 C -0.48 -23.44 6.50 24.66 0.16 -23.28 16 14 C 0.58 29.20 7.51 86.30 0.65 29.85 16 15 O -0.59 -34.17 11.89 -4.58 -0.05 -34.22 16 16 N -0.68 -26.62 5.33 -307.49 -1.64 -28.26 16 17 C 0.15 5.54 6.31 38.20 0.24 5.78 16 18 C -0.15 -3.93 9.96 22.40 0.22 -3.71 16 19 C -0.08 -1.67 9.07 22.25 0.20 -1.46 16 20 C -0.11 -2.89 5.27 -19.84 -0.10 -3.00 16 21 C 0.12 2.29 1.83 -10.84 -0.02 2.27 16 22 O -0.55 -11.21 12.50 -138.82 -1.73 -12.94 16 23 C 0.01 0.23 8.53 72.29 0.62 0.85 16 24 O -0.39 -7.24 12.41 -138.82 -1.72 -8.96 16 25 C 0.01 0.21 8.36 72.30 0.60 0.82 16 26 C -0.08 -2.60 9.43 22.25 0.21 -2.39 16 27 C -0.15 -6.19 8.66 22.40 0.19 -5.99 16 28 H 0.29 15.41 8.73 -92.71 -0.81 14.61 16 29 H 0.14 5.32 3.63 -2.91 -0.01 5.31 16 30 H 0.20 4.71 8.06 -2.91 -0.02 4.69 16 31 H 0.41 13.60 7.90 -92.71 -0.73 12.87 16 32 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 33 H 0.17 2.18 6.15 -2.91 -0.02 2.16 16 34 H 0.40 4.95 8.95 -74.05 -0.66 4.28 16 35 H 0.10 1.63 8.03 -2.39 -0.02 1.61 16 36 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.11 1.25 5.92 -2.39 -0.01 1.23 16 39 H 0.12 4.03 7.41 -2.91 -0.02 4.01 16 40 H 0.10 4.70 6.30 -2.91 -0.02 4.68 16 Total: -1.00 -72.79 344.83 -0.33 -73.12 By element: Atomic # 1 Polarization: 40.77 SS G_CDS: -0.38 Total: 40.39 kcal Atomic # 6 Polarization: -37.52 SS G_CDS: 4.45 Total: -33.07 kcal Atomic # 7 Polarization: -68.04 SS G_CDS: -1.34 Total: -69.38 kcal Atomic # 8 Polarization: -52.61 SS G_CDS: -3.51 Total: -56.13 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.70 Total: 44.87 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -1.26 Total: 0.19 kcal Total: -72.79 -0.33 -73.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868368708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.646 kcal (2) G-P(sol) polarization free energy of solvation -72.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds