Wall clock time and date at job start Wed Apr 1 2020 03:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00243 * 2 1 4 4 H 1.48498 * 109.47502 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47468 * 300.00676 * 3 2 1 6 6 H 1.48500 * 109.47180 * 60.00330 * 3 2 1 7 7 C 1.37874 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00440 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47197 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47301 * 180.02562 * 10 9 7 12 12 O 1.45204 * 109.47291 * 180.02562 * 11 10 9 13 13 C 1.34234 * 116.99852 * 180.02562 * 12 11 10 14 14 O 1.20825 * 120.00174 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99703 * 180.02562 * 13 12 11 16 16 N 1.46502 * 109.46987 * 179.97438 * 15 13 12 17 17 S 1.65601 * 119.99902 * 164.99646 * 16 15 13 18 18 O 1.42107 * 106.40351 * 311.46098 * 17 16 15 19 19 O 1.42095 * 106.40404 * 178.53967 * 17 16 15 20 20 C 1.76198 * 107.21872 * 64.99881 * 17 16 15 21 21 C 1.38271 * 119.99027 * 270.25597 * 20 17 16 22 22 C 1.38219 * 120.05279 * 180.25746 * 21 20 17 23 23 C 1.38227 * 120.02402 * 359.48356 * 22 21 20 24 24 C 1.38435 * 119.97416 * 0.26250 * 23 22 21 25 25 F 1.35097 * 120.02437 * 179.97438 * 24 23 22 26 26 C 1.38179 * 119.98426 * 90.00066 * 20 17 16 27 27 H 0.97004 * 119.99573 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46939 * 60.00748 * 9 7 2 29 29 H 1.08998 * 109.47497 * 300.00901 * 9 7 2 30 30 H 1.08997 * 109.47350 * 60.00397 * 10 9 7 31 31 H 1.09004 * 109.46974 * 300.00438 * 10 9 7 32 32 H 1.09004 * 109.47473 * 59.99864 * 11 10 9 33 33 H 1.09004 * 109.47208 * 299.99981 * 11 10 9 34 34 H 1.09000 * 109.47428 * 59.99169 * 15 13 12 35 35 H 1.09000 * 109.47035 * 299.99641 * 15 13 12 36 36 H 0.96997 * 120.00291 * 344.99695 * 16 15 13 37 37 H 1.08000 * 119.97479 * 0.02562 * 21 20 17 38 38 H 1.08002 * 119.99072 * 179.76964 * 22 21 20 39 39 H 1.07999 * 120.01289 * 180.23490 * 23 22 21 40 40 H 1.07994 * 120.01414 * 0.02562 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 8 2.4236 -6.0908 -0.0006 13 6 1.9105 -7.3311 -0.0016 14 8 0.7126 -7.4894 -0.0024 15 6 2.8284 -8.5263 -0.0004 16 7 2.0305 -9.7549 -0.0012 17 16 2.7417 -11.2038 -0.3716 18 8 3.4848 -10.9929 -1.5643 19 8 1.7266 -12.1911 -0.2527 20 6 3.9189 -11.5457 0.8941 21 6 5.2217 -11.1011 0.7645 22 6 6.1476 -11.3730 1.7541 23 6 5.7693 -12.0808 2.8796 24 6 4.4638 -12.5219 3.0128 25 9 4.0931 -13.2141 4.1122 26 6 3.5384 -12.2534 2.0182 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6245 -2.5570 0.8896 30 1 2.8717 -3.6045 0.8894 31 1 2.8718 -3.6043 -0.8905 32 1 0.8537 -5.0446 -0.8914 33 1 0.8531 -5.0451 0.8886 34 1 3.4561 -8.5016 0.8904 35 1 3.4585 -8.5013 -0.8895 36 1 1.0856 -9.7197 0.2152 37 1 5.5171 -10.5440 -0.1123 38 1 7.1659 -11.0285 1.6502 39 1 6.4919 -12.2899 3.6545 40 1 2.5199 -12.5973 2.1209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914624114.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:15 Heat of formation + Delta-G solvation = -187.221638 kcal Electronic energy + Delta-G solvation = -26485.964177 eV Core-core repulsion = 22114.335042 eV Total energy + Delta-G solvation = -4371.629135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.49380 -40.50923 -39.58585 -37.76755 -36.98049 -36.36293 -35.19125 -34.07442 -32.11957 -31.79432 -31.22183 -28.47592 -26.71747 -24.26076 -23.47890 -23.35316 -21.19516 -20.43577 -20.26501 -19.09894 -18.34648 -17.44174 -17.17608 -16.98630 -16.80530 -16.78051 -16.33839 -16.28217 -16.18965 -15.63300 -14.86168 -14.72649 -14.57635 -14.49431 -13.90755 -13.61087 -13.28072 -13.17086 -12.95962 -12.63371 -12.60434 -12.55587 -12.36067 -12.23735 -12.20263 -11.94902 -11.40632 -11.03840 -10.81798 -10.72942 -10.55469 -10.52539 -10.26663 -10.14887 -9.81046 -9.57829 -9.51012 -9.20350 -8.43619 -6.08070 -4.11297 -0.29028 0.04938 0.43530 2.04898 2.20963 2.62397 2.80930 3.21044 3.27051 3.34774 3.38598 3.48670 3.81109 4.11641 4.18543 4.30763 4.34129 4.41982 4.59829 4.71870 4.74832 4.81602 5.07041 5.19552 5.25722 5.28151 5.37131 5.46987 5.47074 5.49431 5.90543 6.07993 6.28006 6.45004 6.45366 6.70861 6.90174 7.54659 7.64785 7.65137 7.89979 8.30462 8.95186 9.53399 11.03356 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.017484 B = 0.001839 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.111132 B =15220.759743 C =15917.896446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.023 3.977 10 C -0.109 4.109 11 C 0.068 3.932 12 O -0.353 6.353 13 C 0.458 3.542 14 O -0.503 6.503 15 C 0.122 3.878 16 N -1.108 6.108 17 S 2.705 3.295 18 O -0.945 6.945 19 O -0.945 6.945 20 C -0.655 4.655 21 C -0.033 4.033 22 C -0.108 4.108 23 C -0.097 4.097 24 C 0.080 3.920 25 F -0.133 7.133 26 C -0.052 4.052 27 H 0.261 0.739 28 H 0.020 0.980 29 H 0.019 0.981 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.126 0.874 36 H 0.431 0.569 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.283 -27.411 4.371 30.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.014 4.014 10 C -0.147 4.147 11 C -0.005 4.005 12 O -0.269 6.269 13 C 0.299 3.701 14 O -0.391 6.391 15 C -0.005 4.005 16 N -0.873 5.873 17 S 2.792 3.208 18 O -0.935 6.935 19 O -0.935 6.935 20 C -0.740 4.740 21 C -0.052 4.052 22 C -0.127 4.127 23 C -0.116 4.116 24 C 0.060 3.940 25 F -0.111 7.111 26 C -0.072 4.072 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.128 0.872 35 H 0.143 0.857 36 H 0.270 0.730 37 H 0.170 0.830 38 H 0.165 0.835 39 H 0.163 0.837 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 11.754 -27.819 3.663 30.422 hybrid contribution 0.174 0.988 1.108 1.495 sum 11.928 -26.831 4.770 29.748 Atomic orbital electron populations 1.69973 1.06099 1.26714 1.50512 1.25038 0.94892 0.99431 0.95172 0.86482 0.80062 0.83508 0.77622 1.19665 1.20962 1.20976 1.21192 0.93155 0.90615 1.51013 0.92342 1.19063 0.93840 0.90746 0.97732 1.21785 0.99990 0.90806 1.02113 1.23613 0.91136 0.83243 1.02457 1.86477 1.42787 1.14773 1.82822 1.23133 0.88420 0.85346 0.73220 1.90673 1.16658 1.86533 1.45203 1.20692 0.92548 0.81095 1.06200 1.55414 1.22176 1.20877 1.88790 1.01772 0.73264 0.72028 0.73716 1.93627 1.73031 1.85037 1.41760 1.93634 1.56763 1.56490 1.86661 1.30992 1.13225 1.12698 1.17110 1.21124 0.90819 0.94618 0.98627 1.21249 1.00708 0.97896 0.92843 1.21570 0.94652 0.96256 0.99139 1.17731 0.93973 0.97181 0.85072 1.91554 1.92012 1.76700 1.50863 1.20917 1.00610 0.94772 0.90898 0.92906 0.96178 0.96227 0.92040 0.91974 0.91178 0.91257 0.87196 0.85651 0.72973 0.83029 0.83547 0.83697 0.82766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.29 9.11 -34.44 -0.31 -14.61 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.12 5.53 -26.73 -0.15 -2.27 16 11 C 0.07 1.15 5.47 37.15 0.20 1.35 16 12 O -0.35 -5.04 10.22 -39.27 -0.40 -5.45 16 13 C 0.46 5.72 8.03 36.00 0.29 6.01 16 14 O -0.50 -7.68 15.48 -18.75 -0.29 -7.97 16 15 C 0.12 0.94 6.81 -5.19 -0.04 0.91 16 16 N -1.11 -8.80 5.93 -11.66 -0.07 -8.87 16 17 S 2.70 22.38 5.74 -107.50 -0.62 21.76 16 18 O -0.94 -9.77 16.76 -57.17 -0.96 -10.73 16 19 O -0.95 -10.39 17.28 -57.17 -0.99 -11.38 16 20 C -0.65 -4.49 5.94 -39.59 -0.24 -4.73 16 21 C -0.03 -0.18 9.52 -39.58 -0.38 -0.55 16 22 C -0.11 -0.47 10.04 -39.59 -0.40 -0.87 16 23 C -0.10 -0.50 10.03 -39.51 -0.40 -0.90 16 24 C 0.08 0.58 7.30 -39.42 -0.29 0.29 16 25 F -0.13 -1.09 17.27 2.25 0.04 -1.05 16 26 C -0.05 -0.38 9.50 -39.51 -0.38 -0.75 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 1.20 8.13 -51.93 -0.42 0.77 16 33 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 34 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.13 0.74 7.75 -51.93 -0.40 0.34 16 36 H 0.43 3.58 7.71 -34.47 -0.27 3.31 16 37 H 0.15 0.55 7.62 -52.49 -0.40 0.15 16 38 H 0.15 0.25 8.06 -52.49 -0.42 -0.18 16 39 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 40 H 0.15 1.00 7.62 -52.49 -0.40 0.60 16 LS Contribution 370.38 15.07 5.58 5.58 Total: -1.00 -35.46 370.38 -9.11 -44.57 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -4.81 Total: -2.77 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -2.31 Total: -14.22 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.67 Total: -34.48 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -2.64 Total: -35.52 kcal Atomic # 9 Polarization: -1.09 SS G_CDS: 0.04 Total: -1.05 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 22.38 SS G_CDS: -0.62 Total: 21.76 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.46 -9.11 -44.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914624114.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.651 kcal (2) G-P(sol) polarization free energy of solvation -35.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds