Wall clock time and date at job start Wed Apr 1 2020 03:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00243 * 2 1 4 4 H 1.48498 * 109.47502 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47468 * 300.00676 * 3 2 1 6 6 H 1.48500 * 109.47180 * 60.00330 * 3 2 1 7 7 C 1.37874 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00440 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47197 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47301 * 180.02562 * 10 9 7 12 12 O 1.45204 * 109.47291 * 180.02562 * 11 10 9 13 13 C 1.34234 * 116.99852 * 180.02562 * 12 11 10 14 14 O 1.20825 * 120.00174 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99703 * 180.02562 * 13 12 11 16 16 N 1.46502 * 109.46987 * 179.97438 * 15 13 12 17 17 S 1.65601 * 119.99902 * 164.99646 * 16 15 13 18 18 O 1.42107 * 106.40351 * 311.46098 * 17 16 15 19 19 O 1.42095 * 106.40404 * 178.53967 * 17 16 15 20 20 C 1.76198 * 107.21872 * 64.99881 * 17 16 15 21 21 C 1.38271 * 119.99027 * 270.25597 * 20 17 16 22 22 C 1.38219 * 120.05279 * 180.25746 * 21 20 17 23 23 C 1.38227 * 120.02402 * 359.48356 * 22 21 20 24 24 C 1.38435 * 119.97416 * 0.26250 * 23 22 21 25 25 F 1.35097 * 120.02437 * 179.97438 * 24 23 22 26 26 C 1.38179 * 119.98426 * 90.00066 * 20 17 16 27 27 H 0.97004 * 119.99573 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46939 * 60.00748 * 9 7 2 29 29 H 1.08998 * 109.47497 * 300.00901 * 9 7 2 30 30 H 1.08997 * 109.47350 * 60.00397 * 10 9 7 31 31 H 1.09004 * 109.46974 * 300.00438 * 10 9 7 32 32 H 1.09004 * 109.47473 * 59.99864 * 11 10 9 33 33 H 1.09004 * 109.47208 * 299.99981 * 11 10 9 34 34 H 1.09000 * 109.47428 * 59.99169 * 15 13 12 35 35 H 1.09000 * 109.47035 * 299.99641 * 15 13 12 36 36 H 0.96997 * 120.00291 * 344.99695 * 16 15 13 37 37 H 1.08000 * 119.97479 * 0.02562 * 21 20 17 38 38 H 1.08002 * 119.99072 * 179.76964 * 22 21 20 39 39 H 1.07999 * 120.01289 * 180.23490 * 23 22 21 40 40 H 1.07994 * 120.01414 * 0.02562 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 8 2.4236 -6.0908 -0.0006 13 6 1.9105 -7.3311 -0.0016 14 8 0.7126 -7.4894 -0.0024 15 6 2.8284 -8.5263 -0.0004 16 7 2.0305 -9.7549 -0.0012 17 16 2.7417 -11.2038 -0.3716 18 8 3.4848 -10.9929 -1.5643 19 8 1.7266 -12.1911 -0.2527 20 6 3.9189 -11.5457 0.8941 21 6 5.2217 -11.1011 0.7645 22 6 6.1476 -11.3730 1.7541 23 6 5.7693 -12.0808 2.8796 24 6 4.4638 -12.5219 3.0128 25 9 4.0931 -13.2141 4.1122 26 6 3.5384 -12.2534 2.0182 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6245 -2.5570 0.8896 30 1 2.8717 -3.6045 0.8894 31 1 2.8718 -3.6043 -0.8905 32 1 0.8537 -5.0446 -0.8914 33 1 0.8531 -5.0451 0.8886 34 1 3.4561 -8.5016 0.8904 35 1 3.4585 -8.5013 -0.8895 36 1 1.0856 -9.7197 0.2152 37 1 5.5171 -10.5440 -0.1123 38 1 7.1659 -11.0285 1.6502 39 1 6.4919 -12.2899 3.6545 40 1 2.5199 -12.5973 2.1209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914624114.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:14 Heat of formation + Delta-G solvation = -211.598865 kcal Electronic energy + Delta-G solvation = -26487.021253 eV Core-core repulsion = 22114.335042 eV Total energy + Delta-G solvation = -4372.686211 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.03473 -41.59606 -40.00854 -38.52426 -38.10800 -37.11602 -35.96993 -35.91930 -33.67559 -32.54531 -31.65234 -29.66045 -28.17700 -25.13136 -24.71609 -23.88793 -22.24231 -22.13578 -20.90683 -19.70464 -19.10800 -18.68953 -18.12561 -17.91621 -17.83781 -17.48688 -17.30750 -16.91170 -16.73631 -16.53498 -16.45251 -15.92456 -15.60154 -14.95810 -14.70299 -14.51908 -14.40350 -14.05557 -13.77184 -13.69457 -13.63823 -13.45504 -13.35757 -13.35304 -13.28344 -12.85619 -12.84458 -12.49143 -12.35937 -12.08226 -11.92555 -11.88305 -11.44520 -11.39832 -11.20795 -10.83787 -10.59046 -10.56877 -9.96712 -8.20906 -6.31990 -0.90726 -0.43686 0.00226 1.05693 1.40090 1.42806 1.44171 1.56697 1.89172 2.26229 2.42398 2.59744 2.97582 3.13492 3.30629 3.40103 3.64434 3.83354 3.95840 4.02550 4.07066 4.12144 4.18637 4.22481 4.37869 4.43281 4.46017 4.77520 4.83067 4.86002 4.89549 5.02086 5.10421 5.10700 5.38761 5.52894 5.66306 5.67788 5.75062 5.82267 6.20440 6.58838 6.84860 7.37750 8.91412 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.017484 B = 0.001839 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.111132 B =15220.759743 C =15917.896446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.094 4.094 11 C 0.078 3.922 12 O -0.349 6.349 13 C 0.456 3.544 14 O -0.535 6.535 15 C 0.124 3.876 16 N -1.110 6.110 17 S 2.725 3.275 18 O -0.965 6.965 19 O -0.979 6.979 20 C -0.656 4.656 21 C -0.034 4.034 22 C -0.102 4.102 23 C -0.093 4.093 24 C 0.059 3.941 25 F -0.145 7.145 26 C -0.068 4.068 27 H 0.264 0.736 28 H -0.004 1.004 29 H -0.004 1.004 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.430 0.570 37 H 0.173 0.827 38 H 0.181 0.819 39 H 0.168 0.832 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.532 -27.412 4.639 31.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.132 4.132 11 C 0.004 3.996 12 O -0.265 6.265 13 C 0.299 3.701 14 O -0.425 6.425 15 C -0.003 4.003 16 N -0.874 5.874 17 S 2.816 3.184 18 O -0.955 6.955 19 O -0.969 6.969 20 C -0.744 4.744 21 C -0.054 4.054 22 C -0.120 4.120 23 C -0.111 4.111 24 C 0.039 3.961 25 F -0.124 7.124 26 C -0.088 4.088 27 H 0.072 0.928 28 H 0.014 0.986 29 H 0.015 0.985 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.168 0.832 35 H 0.168 0.832 36 H 0.268 0.732 37 H 0.191 0.809 38 H 0.198 0.802 39 H 0.185 0.815 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 15.006 -27.835 3.908 31.862 hybrid contribution -0.802 0.912 1.050 1.605 sum 14.204 -26.922 4.958 30.840 Atomic orbital electron populations 1.70108 1.07896 1.27806 1.51676 1.26016 0.95779 1.03566 0.94743 0.85346 0.79215 0.78535 0.77624 1.18190 1.20608 1.20543 1.21664 0.93812 0.91812 1.50465 0.91495 1.18955 0.94362 0.92625 0.95422 1.21459 0.98688 0.90197 1.02847 1.23176 0.90917 0.83489 1.02018 1.86453 1.41768 1.15056 1.83199 1.24070 0.88811 0.85485 0.71743 1.90672 1.18399 1.86721 1.46665 1.21047 0.91615 0.78328 1.09308 1.55353 1.22243 1.20896 1.88941 1.00886 0.72699 0.71347 0.73495 1.93594 1.73309 1.85267 1.43362 1.93587 1.58348 1.57738 1.87243 1.30629 1.13540 1.13892 1.16372 1.21519 0.90138 0.94119 0.99575 1.21665 1.01981 0.96657 0.91701 1.21924 0.94016 0.95195 0.99993 1.17988 0.95037 0.98162 0.84947 1.91520 1.92257 1.77149 1.51426 1.20982 1.00859 0.95496 0.91483 0.92761 0.98593 0.98528 0.91125 0.91245 0.91858 0.91675 0.83219 0.83180 0.73203 0.80926 0.80154 0.81452 0.83157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.04 13.29 21.45 0.28 -55.76 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 3 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.54 -29.60 9.11 25.60 0.23 -29.37 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.02 1.19 4.97 29.85 0.15 1.34 16 10 C -0.09 -3.61 5.53 30.59 0.17 -3.45 16 11 C 0.08 2.60 5.47 71.98 0.39 2.99 16 12 O -0.35 -9.40 10.22 -51.45 -0.53 -9.93 16 13 C 0.46 10.73 8.03 71.24 0.57 11.30 16 14 O -0.54 -16.22 15.48 21.97 0.34 -15.88 16 15 C 0.12 1.58 6.81 85.63 0.58 2.16 16 16 N -1.11 -16.30 5.93 -190.79 -1.13 -17.44 16 17 S 2.73 42.74 5.74 -56.49 -0.32 42.42 16 18 O -0.97 -18.56 16.76 -128.00 -2.15 -20.70 16 19 O -0.98 -21.92 17.28 -128.00 -2.21 -24.13 16 20 C -0.66 -7.94 5.94 22.26 0.13 -7.81 16 21 C -0.03 -0.26 9.52 22.27 0.21 -0.05 16 22 C -0.10 -0.50 10.04 22.26 0.22 -0.27 16 23 C -0.09 -0.71 10.03 22.31 0.22 -0.48 16 24 C 0.06 0.78 7.30 22.38 0.16 0.94 16 25 F -0.14 -2.35 17.27 44.97 0.78 -1.57 16 26 C -0.07 -0.95 9.50 22.31 0.21 -0.74 16 27 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 28 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 29 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 32 H 0.06 2.19 8.13 -2.38 -0.02 2.17 16 33 H 0.06 2.22 8.13 -2.38 -0.02 2.20 16 34 H 0.15 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.15 1.25 7.75 -2.39 -0.02 1.23 16 36 H 0.43 7.03 7.71 -96.75 -0.75 6.28 16 37 H 0.17 0.55 7.62 -2.91 -0.02 0.53 16 38 H 0.18 -0.34 8.06 -2.91 -0.02 -0.36 16 39 H 0.17 0.45 8.06 -2.91 -0.02 0.43 16 40 H 0.15 2.06 7.62 -2.91 -0.02 2.04 16 Total: -1.00 -77.90 370.38 1.15 -76.75 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 0.34 Total: 4.28 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 3.73 Total: -23.17 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -0.85 Total: -73.19 kcal Atomic # 8 Polarization: -66.09 SS G_CDS: -4.54 Total: -70.64 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.78 Total: -1.57 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 42.74 SS G_CDS: -0.32 Total: 42.42 kcal Total: -77.90 1.15 -76.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914624114.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.851 kcal (2) G-P(sol) polarization free energy of solvation -77.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds