Wall clock time and date at job start Wed Apr 1 2020 02:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39929 * 125.75755 * 2 1 4 4 C 1.30444 * 108.90015 * 179.73887 * 3 2 1 5 5 C 1.41295 * 108.02288 * 0.41146 * 4 3 2 6 6 C 1.47420 * 126.41876 * 179.85567 * 5 4 3 7 7 O 1.21606 * 120.00408 * 179.68919 * 6 5 4 8 8 N 1.34780 * 119.99884 * 359.68370 * 6 5 4 9 9 C 1.46500 * 119.99910 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47129 * 324.99754 * 9 8 6 11 11 C 1.50699 * 109.46939 * 205.00060 * 9 8 6 12 12 H 1.08003 * 120.00271 * 359.97438 * 11 9 8 13 13 C 1.37877 * 120.00384 * 179.97438 * 11 9 8 14 14 N 1.31515 * 119.99644 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 120.00636 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46664 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47482 * 119.99851 * 15 13 11 18 18 H 1.48497 * 109.47236 * 240.00229 * 15 13 11 19 19 C 1.52997 * 109.47473 * 85.00011 * 9 8 6 20 20 F 1.39905 * 109.47157 * 59.99740 * 19 9 8 21 21 F 1.39900 * 109.47010 * 300.00131 * 19 9 8 22 22 F 1.39897 * 109.47422 * 179.97438 * 19 9 8 23 23 C 1.34261 * 125.74938 * 180.02562 * 2 1 3 24 24 C 1.50698 * 126.29546 * 359.97438 * 23 2 1 25 25 F 1.39906 * 109.47062 * 30.02646 * 24 23 2 26 26 F 1.39902 * 109.47299 * 150.02429 * 24 23 2 27 27 F 1.39898 * 109.47018 * 270.02777 * 24 23 2 28 28 H 1.09002 * 109.46633 * 269.99995 * 1 2 3 29 29 H 1.09003 * 109.47011 * 29.99222 * 1 2 3 30 30 H 1.08992 * 109.47470 * 149.99919 * 1 2 3 31 31 H 1.08001 * 125.99305 * 180.26039 * 4 3 2 32 32 H 0.96994 * 120.00115 * 0.02562 * 8 6 5 33 33 H 0.97006 * 120.00331 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2827 1.1355 0.0000 4 6 3.5311 0.7573 0.0056 5 6 3.5599 -0.6554 -0.0002 6 6 4.7637 -1.5063 0.0002 7 8 4.6525 -2.7172 0.0005 8 7 5.9877 -0.9420 0.0001 9 6 7.1841 -1.7876 -0.0001 10 1 6.9950 -2.6847 0.5894 11 6 8.3376 -1.0259 0.6003 12 1 8.1940 -0.0132 0.9470 13 6 9.5763 -1.6219 0.7072 14 7 9.7510 -2.8554 0.2856 15 14 11.0059 -0.6782 1.4520 16 1 10.5511 0.6795 1.8459 17 1 11.5055 -1.4002 2.6496 18 1 12.0977 -0.5632 0.4521 19 6 7.5279 -2.1845 -1.4371 20 9 7.7706 -1.0330 -2.1936 21 9 6.4571 -2.8916 -1.9944 22 9 8.6707 -2.9915 -1.4373 23 6 2.2494 -1.0896 -0.0005 24 6 1.7849 -2.5232 -0.0006 25 9 0.5545 -2.6147 -0.6602 26 9 2.7278 -3.3190 -0.6601 27 9 1.6410 -2.9669 1.3184 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5137 30 1 -0.3634 -0.8899 -0.5138 31 1 4.3919 1.4095 0.0110 32 1 6.0765 0.0239 0.0002 33 1 10.6226 -3.2747 0.3604 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928812473.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:45 Heat of formation + Delta-G solvation = -251.308446 kcal Electronic energy + Delta-G solvation = -32142.235509 eV Core-core repulsion = 26568.589891 eV Total energy + Delta-G solvation = -5573.645618 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.065 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.36632 -50.36519 -48.95322 -48.72951 -47.99774 -47.67953 -42.77207 -40.22518 -36.48719 -34.89882 -34.28626 -32.63889 -30.57597 -28.22510 -27.13969 -26.53596 -24.41088 -23.10259 -22.21209 -21.43537 -20.05834 -19.74236 -19.44970 -18.97736 -18.77856 -18.61152 -18.06791 -17.58653 -16.99264 -16.78890 -16.33848 -16.13310 -15.70012 -15.64422 -15.49368 -15.27592 -15.21520 -14.98127 -14.91851 -14.86218 -14.81461 -14.43092 -14.37230 -14.23346 -13.99208 -13.84554 -13.73151 -13.58068 -13.35111 -12.98717 -12.70474 -12.62104 -12.35011 -12.15373 -11.51392 -11.02855 -10.93533 -10.65934 -10.22048 -9.92782 -8.17352 -6.47545 -0.26187 0.71704 0.90639 1.42924 1.49918 1.51553 1.63985 2.12651 2.20797 2.35682 2.44262 2.60692 2.86195 2.98953 3.10550 3.22757 3.66593 3.83795 3.85802 3.91105 4.14956 4.24423 4.27051 4.41649 4.56663 4.95188 5.05076 5.29806 5.41520 5.58182 5.68907 6.07472 6.57178 6.70620 7.20064 7.33402 8.75650 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.018453 B = 0.003864 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.038112 B = 7243.900537 C = 7764.068679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.320 5.320 3 N -0.266 5.266 4 C 0.094 3.906 5 C -0.237 4.237 6 C 0.570 3.430 7 O -0.559 6.559 8 N -0.694 5.694 9 C 0.254 3.746 10 H 0.051 0.949 11 C -0.557 4.557 12 H 0.097 0.903 13 C 0.015 3.985 14 N -0.875 5.875 15 Si 0.982 3.018 16 H -0.252 1.252 17 H -0.280 1.280 18 H -0.283 1.283 19 C 0.413 3.587 20 F -0.202 7.202 21 F -0.219 7.219 22 F -0.151 7.151 23 C 0.034 3.966 24 C 0.540 3.460 25 F -0.163 7.163 26 F -0.146 7.146 27 F -0.168 7.168 28 H 0.108 0.892 29 H 0.125 0.875 30 H 0.112 0.888 31 H 0.236 0.764 32 H 0.415 0.585 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.909 8.197 0.228 18.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.099 5.099 3 N -0.087 5.087 4 C -0.091 4.091 5 C -0.254 4.254 6 C 0.357 3.643 7 O -0.438 6.438 8 N -0.344 5.344 9 C 0.147 3.853 10 H 0.068 0.932 11 C -0.594 4.594 12 H 0.115 0.885 13 C -0.190 4.190 14 N -0.509 5.509 15 Si 0.806 3.194 16 H -0.176 1.176 17 H -0.206 1.206 18 H -0.209 1.209 19 C 0.357 3.643 20 F -0.184 7.184 21 F -0.201 7.201 22 F -0.133 7.133 23 C -0.101 4.101 24 C 0.483 3.517 25 F -0.145 7.145 26 F -0.127 7.127 27 F -0.149 7.149 28 H 0.126 0.874 29 H 0.144 0.856 30 H 0.130 0.870 31 H 0.252 0.748 32 H 0.252 0.748 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.845 8.160 0.177 19.623 hybrid contribution 1.451 -0.735 -0.165 1.635 sum -16.394 7.425 0.013 17.997 Atomic orbital electron populations 1.22925 0.69919 1.08037 1.06722 1.48713 1.08809 1.01198 1.51212 1.77283 1.02047 1.06183 1.23218 1.24654 0.96492 0.92190 0.95784 1.20101 0.91176 0.95295 1.18814 1.17696 0.83202 0.87218 0.76176 1.90862 1.86801 1.15226 1.50910 1.45600 1.03969 1.11027 1.73828 1.19354 0.85098 0.94164 0.86642 0.93165 1.21264 0.93014 1.01841 1.43290 0.88524 1.25986 1.02000 0.96109 0.94948 1.70544 1.24969 1.13752 1.41682 0.85121 0.77607 0.79078 0.77578 1.17581 1.20603 1.20923 1.23311 0.74516 0.74339 0.92147 1.92988 1.94606 1.51346 1.79479 1.93071 1.58201 1.80345 1.88454 1.93376 1.49740 1.73881 1.96262 1.21141 0.92652 0.89033 1.07323 1.17174 0.75127 0.84643 0.74742 1.93137 1.43780 1.96474 1.81079 1.93439 1.63825 1.74900 1.80564 1.93247 1.95467 1.90464 1.35710 0.87383 0.85642 0.86964 0.74826 0.74811 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.71 11.16 127.77 1.43 2.13 16 2 N -0.32 -6.88 3.98 -354.30 -1.41 -8.29 16 3 N -0.27 -6.02 12.50 -56.27 -0.70 -6.73 16 4 C 0.09 2.16 11.50 85.65 0.99 3.15 16 5 C -0.24 -7.28 6.09 -20.15 -0.12 -7.40 16 6 C 0.57 22.52 7.30 86.66 0.63 23.15 16 7 O -0.56 -26.36 11.75 -4.05 -0.05 -26.41 16 8 N -0.69 -27.21 4.98 -449.38 -2.24 -29.44 16 9 C 0.25 12.47 2.21 44.24 0.10 12.56 16 10 H 0.05 2.85 7.58 -2.39 -0.02 2.83 16 11 C -0.56 -27.22 8.46 25.60 0.22 -27.00 16 12 H 0.10 4.27 7.74 -2.91 -0.02 4.25 16 13 C 0.01 0.75 5.20 84.65 0.44 1.19 16 14 N -0.88 -48.01 9.51 21.45 0.20 -47.80 16 15 Si 0.98 39.72 29.54 68.60 2.03 41.74 16 16 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 17 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 18 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 19 C 0.41 21.16 2.81 71.98 0.20 21.37 16 20 F -0.20 -9.71 16.94 44.97 0.76 -8.95 16 21 F -0.22 -11.29 15.68 44.97 0.70 -10.58 16 22 F -0.15 -8.49 12.91 44.97 0.58 -7.91 16 23 C 0.03 0.94 6.46 42.14 0.27 1.21 16 24 C 0.54 15.44 3.24 71.24 0.23 15.67 16 25 F -0.16 -3.60 14.53 44.97 0.65 -2.95 16 26 F -0.15 -5.41 13.51 44.97 0.61 -4.80 16 27 F -0.17 -4.86 17.30 44.97 0.78 -4.08 16 28 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.13 0.90 8.14 -2.39 -0.02 0.89 16 30 H 0.11 1.15 5.52 -2.39 -0.01 1.14 16 31 H 0.24 3.61 7.50 -2.91 -0.02 3.59 16 32 H 0.41 13.03 7.49 -92.71 -0.69 12.33 16 33 H 0.27 13.92 8.31 -92.70 -0.77 13.15 16 Total: -1.00 -68.10 309.29 6.84 -61.26 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 0.54 Total: 8.91 kcal Atomic # 6 Polarization: 41.65 SS G_CDS: 4.38 Total: 46.03 kcal Atomic # 7 Polarization: -88.12 SS G_CDS: -4.15 Total: -92.26 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.05 Total: -26.41 kcal Atomic # 9 Polarization: -43.36 SS G_CDS: 4.09 Total: -39.27 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.74 kcal Total: -68.10 6.84 -61.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928812473.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.048 kcal (2) G-P(sol) polarization free energy of solvation -68.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds