Wall clock time and date at job start Wed Apr 1 2020 02:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34264 * 125.75280 * 2 1 4 4 C 1.38045 * 107.41568 * 180.14546 * 3 2 1 5 5 C 1.47421 * 126.41504 * 179.87237 * 4 3 2 6 6 O 1.21608 * 120.00291 * 179.68593 * 5 4 3 7 7 N 1.34779 * 120.00288 * 359.68530 * 5 4 3 8 8 C 1.46498 * 120.00173 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47064 * 34.99600 * 8 7 5 10 10 C 1.50693 * 109.47215 * 155.00186 * 8 7 5 11 11 H 1.07996 * 120.00587 * 116.77866 * 10 8 7 12 12 C 1.37890 * 119.99751 * 296.77490 * 10 8 7 13 13 N 1.31512 * 119.99814 * 173.95859 * 12 10 8 14 14 Si 1.86800 * 119.99820 * 353.96146 * 12 10 8 15 15 H 1.48501 * 109.47124 * 85.15498 * 14 12 10 16 16 H 1.48504 * 109.46636 * 205.15396 * 14 12 10 17 17 H 1.48499 * 109.47289 * 325.15404 * 14 12 10 18 18 C 1.53002 * 109.46990 * 274.99944 * 8 7 5 19 19 F 1.39905 * 109.47206 * 65.25288 * 18 8 7 20 20 F 1.39901 * 109.46980 * 305.25393 * 18 8 7 21 21 F 1.39902 * 109.47224 * 185.25684 * 18 8 7 22 22 C 1.41292 * 107.16842 * 359.60813 * 4 3 2 23 23 C 1.50703 * 125.98809 * 180.20927 * 22 4 3 24 24 F 1.39899 * 109.46987 * 89.99714 * 23 22 4 25 25 F 1.39900 * 109.46994 * 209.99794 * 23 22 4 26 26 F 1.39898 * 109.47002 * 329.99539 * 23 22 4 27 27 N 1.30452 * 108.02349 * 0.23852 * 22 4 3 28 28 H 1.08997 * 109.47409 * 270.27020 * 1 2 3 29 29 H 1.09006 * 109.46891 * 30.26949 * 1 2 3 30 30 H 1.08996 * 109.47191 * 150.26303 * 1 2 3 31 31 H 1.07998 * 126.29253 * 359.97438 * 3 2 1 32 32 H 0.97000 * 119.99723 * 0.02562 * 7 5 4 33 33 H 0.96997 * 119.99969 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0896 0.0000 4 6 3.5599 0.6553 -0.0033 5 6 4.7638 1.5061 -0.0072 6 8 5.8682 0.9970 -0.0042 7 7 4.6406 2.8482 -0.0141 8 6 5.8370 3.6937 -0.0185 9 1 6.6195 3.2128 -0.6055 10 6 5.5041 5.0320 -0.6258 11 1 5.5791 5.9293 -0.0296 12 6 5.1038 5.1110 -1.9430 13 7 4.6996 6.2597 -2.4396 14 14 5.1355 3.5864 -3.0218 15 1 3.8755 2.8226 -2.8365 16 1 5.2651 3.9899 -4.4451 17 1 6.2911 2.7348 -2.6414 18 6 6.3261 3.8927 1.4175 19 9 6.7479 2.6657 1.9408 20 9 5.2824 4.3992 2.1996 21 9 7.3949 4.7953 1.4252 22 6 3.5311 -0.7573 0.0039 23 6 4.7322 -1.6675 0.0078 24 9 5.1046 -1.9424 1.3280 25 9 4.4135 -2.8629 -0.6454 26 9 5.7933 -1.0422 -0.6556 27 7 2.2826 -1.1356 0.0058 28 1 -0.3634 0.0048 1.0276 29 1 -0.3633 0.8876 -0.5180 30 1 -0.3633 -0.8923 -0.5097 31 1 1.9166 2.1170 -0.0004 32 1 3.7597 3.2544 -0.0162 33 1 4.4183 6.3154 -3.3662 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928815116.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:36 Heat of formation + Delta-G solvation = -276.156482 kcal Electronic energy + Delta-G solvation = -32190.591004 eV Core-core repulsion = 26615.867894 eV Total energy + Delta-G solvation = -5574.723109 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.065 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.19385 -50.84888 -48.76787 -48.62420 -48.36039 -48.32912 -42.80342 -40.33174 -36.67903 -34.91874 -34.44864 -32.46037 -30.41468 -29.42796 -26.91771 -26.62076 -24.21355 -23.03657 -22.13608 -21.42864 -20.26626 -19.61243 -19.33262 -19.31181 -19.20477 -18.53900 -18.35626 -18.12968 -17.04318 -16.93146 -16.74306 -15.91961 -15.66105 -15.56455 -15.41261 -15.28770 -15.22395 -15.11816 -14.88919 -14.81979 -14.80164 -14.79082 -14.69981 -14.53397 -14.46640 -14.25967 -13.78768 -13.70042 -13.57222 -13.37370 -12.96479 -12.50525 -12.43418 -12.07171 -11.86132 -11.14916 -11.01713 -10.89752 -10.26657 -9.99374 -8.50341 -6.66885 0.23968 0.30932 0.80041 1.25878 1.37167 1.49130 1.65488 1.91185 2.09254 2.20463 2.31174 2.48355 2.83672 2.98159 3.20699 3.25783 3.40347 3.47908 3.51768 3.68761 4.02423 4.10911 4.36502 4.42043 4.55531 4.69392 4.71076 4.98220 5.37063 5.56962 5.89951 5.93163 6.46816 6.64221 7.03287 7.22993 8.61785 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.011517 B = 0.005267 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.608993 B = 5315.031219 C = 5990.456577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.330 5.330 3 C 0.136 3.864 4 C -0.280 4.280 5 C 0.568 3.432 6 O -0.555 6.555 7 N -0.706 5.706 8 C 0.214 3.786 9 H 0.077 0.923 10 C -0.537 4.537 11 H 0.068 0.932 12 C 0.072 3.928 13 N -0.898 5.898 14 Si 0.917 3.083 15 H -0.242 1.242 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.445 3.555 19 F -0.192 7.192 20 F -0.183 7.183 21 F -0.187 7.187 22 C 0.017 3.983 23 C 0.550 3.450 24 F -0.172 7.172 25 F -0.171 7.171 26 F -0.150 7.150 27 N -0.256 5.256 28 H 0.108 0.892 29 H 0.133 0.867 30 H 0.105 0.895 31 H 0.241 0.759 32 H 0.412 0.588 33 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.449 -11.172 3.636 17.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.109 5.109 3 C -0.016 4.016 4 C -0.296 4.296 5 C 0.356 3.644 6 O -0.433 6.433 7 N -0.359 5.359 8 C 0.109 3.891 9 H 0.094 0.906 10 C -0.575 4.575 11 H 0.086 0.914 12 C -0.134 4.134 13 N -0.533 5.533 14 Si 0.741 3.259 15 H -0.166 1.166 16 H -0.213 1.213 17 H -0.201 1.201 18 C 0.390 3.610 19 F -0.173 7.173 20 F -0.165 7.165 21 F -0.169 7.169 22 C -0.150 4.150 23 C 0.493 3.507 24 F -0.154 7.154 25 F -0.152 7.152 26 F -0.131 7.131 27 N -0.080 5.080 28 H 0.126 0.874 29 H 0.151 0.849 30 H 0.124 0.876 31 H 0.257 0.743 32 H 0.251 0.749 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.701 -12.445 3.514 18.126 hybrid contribution 0.806 0.337 -0.307 0.926 sum -11.896 -12.107 3.207 17.274 Atomic orbital electron populations 1.22766 0.68737 1.07777 1.06634 1.48893 1.09139 1.01978 1.50881 1.23822 0.88032 0.95992 0.93749 1.20135 0.94754 0.91641 1.23022 1.17852 0.88185 0.82492 0.75885 1.90840 1.27831 1.73942 1.50706 1.46852 1.10787 1.04455 1.73843 1.19864 0.88473 0.93459 0.87318 0.90566 1.20692 1.49057 0.90138 0.97607 0.91400 1.25302 0.92191 0.97996 0.97960 1.69931 1.40476 1.26554 1.16336 0.86183 0.80912 0.80478 0.78278 1.16590 1.21253 1.20096 1.21326 0.75186 0.72930 0.91591 1.93166 1.90597 1.44511 1.89033 1.93086 1.58155 1.87580 1.77670 1.93103 1.57982 1.68745 1.97049 1.22021 0.93207 0.93365 1.06454 1.16953 0.81805 0.77558 0.74370 1.93206 1.92270 1.93907 1.35977 1.93203 1.92824 1.47895 1.81298 1.93381 1.57631 1.81658 1.80470 1.77058 0.99416 1.09675 1.21802 0.87383 0.84868 0.87597 0.74319 0.74934 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.45 11.44 127.77 1.46 1.92 16 2 N -0.33 -6.00 3.98 -367.77 -1.46 -7.46 16 3 C 0.14 2.75 10.99 84.28 0.93 3.68 16 4 C -0.28 -8.73 6.09 -20.15 -0.12 -8.85 16 5 C 0.57 21.94 7.17 86.66 0.62 22.56 16 6 O -0.55 -25.22 11.83 -4.06 -0.05 -25.27 16 7 N -0.71 -26.61 3.19 -449.38 -1.43 -28.04 16 8 C 0.21 9.46 1.41 44.24 0.06 9.53 16 9 H 0.08 3.69 6.29 -2.39 -0.02 3.68 16 10 C -0.54 -26.41 8.64 25.60 0.22 -26.19 16 11 H 0.07 3.70 7.91 -2.91 -0.02 3.68 16 12 C 0.07 3.55 5.46 84.66 0.46 4.02 16 13 N -0.90 -47.22 13.96 21.45 0.30 -46.92 16 14 Si 0.92 39.73 26.14 68.60 1.79 41.52 16 15 H -0.24 -9.30 7.11 99.48 0.71 -8.59 16 16 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.28 -12.91 6.55 99.48 0.65 -12.26 16 18 C 0.45 19.10 2.79 71.98 0.20 19.30 16 19 F -0.19 -8.31 15.84 44.97 0.71 -7.60 16 20 F -0.18 -7.42 16.97 44.97 0.76 -6.65 16 21 F -0.19 -8.23 16.83 44.97 0.76 -7.48 16 22 C 0.02 0.54 6.60 43.52 0.29 0.83 16 23 C 0.55 18.68 3.37 71.24 0.24 18.92 16 24 F -0.17 -5.87 17.30 44.97 0.78 -5.09 16 25 F -0.17 -5.31 17.25 44.97 0.78 -4.53 16 26 F -0.15 -5.89 13.56 44.97 0.61 -5.28 16 27 N -0.26 -6.83 12.43 -46.67 -0.58 -7.41 16 28 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.13 -0.01 8.14 -2.38 -0.02 -0.03 16 30 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.24 2.66 7.46 -2.91 -0.02 2.64 16 32 H 0.41 13.01 7.52 -92.71 -0.70 12.31 16 33 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -68.92 315.92 7.80 -61.11 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: 0.48 Total: 3.40 kcal Atomic # 6 Polarization: 41.35 SS G_CDS: 4.36 Total: 45.71 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -3.18 Total: -89.83 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.05 Total: -25.27 kcal Atomic # 9 Polarization: -41.03 SS G_CDS: 4.40 Total: -36.64 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 1.79 Total: 41.52 kcal Total: -68.92 7.80 -61.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928815116.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.044 kcal (2) G-P(sol) polarization free energy of solvation -68.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -283.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -276.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds