Wall clock time and date at job start Wed Apr 1 2020 02:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00058 * 2 1 4 4 C 1.50702 * 112.52860 * 303.47986 * 3 2 1 5 5 O 1.21282 * 119.99763 * 109.18513 * 4 3 2 6 6 N 1.34773 * 120.00154 * 289.19093 * 4 3 2 7 7 C 1.46498 * 120.00253 * 186.50272 * 6 4 3 8 8 C 1.50692 * 109.47544 * 89.99749 * 7 6 4 9 9 H 1.07999 * 119.99754 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00450 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99904 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00269 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46969 * 89.99757 * 12 10 8 14 14 H 1.48497 * 109.47151 * 209.99537 * 12 10 8 15 15 H 1.48501 * 109.47122 * 329.99794 * 12 10 8 16 16 C 1.46503 * 119.99888 * 6.50126 * 6 4 3 17 17 C 1.52994 * 109.47569 * 99.14415 * 16 6 4 18 18 F 1.39896 * 109.47604 * 66.24313 * 17 16 6 19 19 F 1.39896 * 109.47523 * 186.24899 * 17 16 6 20 20 F 1.39910 * 109.46861 * 306.24714 * 17 16 6 21 21 C 1.53042 * 113.15234 * 173.67128 * 3 2 1 22 22 S 1.81432 * 89.89072 * 277.64160 * 21 3 2 23 23 O 1.42100 * 112.75264 * 79.52180 * 22 21 3 24 24 O 1.42101 * 112.75213 * 223.27480 * 22 21 3 25 25 C 1.53040 * 113.15585 * 73.29613 * 3 2 1 26 26 H 1.08997 * 109.46877 * 62.01274 * 1 2 3 27 27 H 1.08995 * 109.47397 * 182.01290 * 1 2 3 28 28 H 1.09008 * 109.46898 * 302.01467 * 1 2 3 29 29 H 1.09007 * 109.47432 * 210.00096 * 7 6 4 30 30 H 1.09000 * 109.46910 * 329.99674 * 7 6 4 31 31 H 0.96996 * 120.00298 * 180.02562 * 11 10 8 32 32 H 1.09001 * 109.47058 * 219.14071 * 16 6 4 33 33 H 1.08998 * 109.46888 * 339.13809 * 16 6 4 34 34 H 1.08999 * 113.14950 * 32.89667 * 21 3 2 35 35 H 1.09003 * 113.15175 * 162.38557 * 21 3 2 36 36 H 1.08997 * 113.15250 * 197.61499 * 25 3 2 37 37 H 1.09007 * 113.14696 * 327.09486 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5436 2.1452 -1.1611 5 8 0.7963 3.0813 -0.9707 6 7 1.9566 1.8561 -2.4109 7 6 1.6205 2.7530 -3.5194 8 6 2.7031 3.7901 -3.6725 9 1 3.5564 3.7816 -3.0105 10 6 2.6043 4.7497 -4.6575 11 7 1.5654 4.7596 -5.4640 12 14 3.9458 6.0356 -4.8468 13 1 4.9826 5.5350 -5.7848 14 1 3.3576 7.2895 -5.3824 15 1 4.5639 6.3046 -3.5235 16 6 2.7417 0.6447 -2.6611 17 6 1.8247 -0.4556 -3.1986 18 9 1.3451 -0.0881 -4.4604 19 9 2.5427 -1.6517 -3.3029 20 9 0.7472 -0.6333 -2.3239 21 6 3.5327 1.2862 0.1551 22 16 3.3441 1.1259 1.9525 23 8 3.0455 -0.2031 2.3573 24 8 4.2389 1.9599 2.6755 25 6 1.8856 2.0197 1.3477 26 1 -0.3633 0.4823 -0.9075 27 1 -0.3634 -1.0270 0.0361 28 1 -0.3633 0.5449 0.8714 29 1 1.5368 2.1765 -4.4408 30 1 0.6711 3.2467 -3.3122 31 1 1.4960 5.4345 -6.1572 32 1 3.5188 0.8604 -3.3944 33 1 3.2023 0.3118 -1.7310 34 1 3.9995 0.4159 -0.3060 35 1 4.0058 2.2215 -0.1443 36 1 2.0411 3.0963 1.2782 37 1 0.9726 1.7637 1.8855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933809370.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:59 Heat of formation + Delta-G solvation = -250.515860 kcal Electronic energy + Delta-G solvation = -31226.138494 eV Core-core repulsion = 26297.535186 eV Total energy + Delta-G solvation = -4928.603308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.074 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.78669 -47.34024 -47.23782 -40.60692 -37.91042 -37.29939 -36.23944 -35.58985 -34.44320 -32.84177 -29.42990 -27.68813 -27.31328 -26.45843 -24.45515 -23.28814 -22.03487 -19.44844 -19.06755 -18.39255 -18.27172 -17.88538 -17.23204 -16.78124 -16.73371 -16.29693 -15.99473 -15.65200 -15.53767 -15.19698 -14.71905 -14.26041 -14.18634 -14.11086 -13.85970 -13.69939 -13.52424 -13.41789 -13.31668 -12.94936 -12.88413 -12.45997 -12.37034 -12.36556 -12.25102 -11.97098 -11.91389 -11.54003 -11.36864 -11.26133 -11.03816 -10.75599 -10.51605 -10.35257 -10.31657 -9.89500 -9.17917 -8.59455 -8.19999 -6.20994 -4.28101 -0.07862 1.72154 2.54858 2.96214 3.15070 3.20263 3.27647 3.28043 3.31555 3.50388 3.83444 3.95243 4.11916 4.25442 4.29422 4.31626 4.62140 4.73079 4.82605 4.96351 5.14449 5.23378 5.24939 5.41096 5.46359 5.51029 5.57538 5.76552 6.56506 6.75614 7.07038 7.23073 7.71917 7.85428 7.99096 8.42386 8.75394 9.37831 10.87330 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.010897 B = 0.005452 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.849461 B = 5134.581487 C = 6657.209699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.343 6.343 3 C 0.106 3.894 4 C 0.522 3.478 5 O -0.507 6.507 6 N -0.580 5.580 7 C 0.236 3.764 8 C -0.538 4.538 9 H 0.061 0.939 10 C 0.065 3.935 11 N -0.888 5.888 12 Si 0.900 3.100 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.273 1.273 16 C 0.060 3.940 17 C 0.432 3.568 18 F -0.177 7.177 19 F -0.188 7.188 20 F -0.177 7.177 21 C -0.600 4.600 22 S 2.421 3.579 23 O -0.895 6.895 24 O -0.921 6.921 25 C -0.606 4.606 26 H 0.058 0.942 27 H 0.098 0.902 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.266 0.734 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.144 0.856 35 H 0.167 0.833 36 H 0.162 0.838 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.160 -10.944 10.505 15.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.261 6.261 3 C 0.060 3.940 4 C 0.305 3.695 5 O -0.381 6.381 6 N -0.312 5.312 7 C 0.119 3.881 8 C -0.577 4.577 9 H 0.079 0.921 10 C -0.138 4.138 11 N -0.526 5.526 12 Si 0.728 3.272 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.198 1.198 16 C -0.067 4.067 17 C 0.376 3.624 18 F -0.158 7.158 19 F -0.169 7.169 20 F -0.159 7.159 21 C -0.726 4.726 22 S 2.600 3.400 23 O -0.892 6.892 24 O -0.918 6.918 25 C -0.734 4.734 26 H 0.076 0.924 27 H 0.117 0.883 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.162 0.838 35 H 0.185 0.815 36 H 0.180 0.820 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.259 -10.925 11.418 15.963 hybrid contribution -0.219 1.088 -1.491 1.859 sum 2.039 -9.837 9.927 14.123 Atomic orbital electron populations 1.22986 0.78874 1.03608 1.01320 1.88008 1.21877 1.21569 1.94632 1.21314 0.92732 0.85628 0.94329 1.19917 0.81303 0.84918 0.83328 1.90726 1.34039 1.29635 1.83687 1.48094 1.51896 1.21928 1.09273 1.19649 0.98006 0.88072 0.82413 1.21335 1.06664 1.13169 1.16530 0.92117 1.24933 0.96003 0.97520 0.95378 1.69928 1.28608 1.35183 1.18893 0.86465 0.81486 0.80871 0.78422 1.20465 1.20985 1.19782 1.22917 0.93578 0.84454 1.05741 1.21444 0.81340 0.83242 0.76381 1.93218 1.89271 1.91169 1.42157 1.93150 1.77994 1.49625 1.96149 1.93181 1.58051 1.95778 1.68866 1.31308 0.98974 1.13159 1.29146 1.08181 0.78440 0.76078 0.77266 1.93731 1.83060 1.32756 1.79670 1.93658 1.60600 1.68104 1.69486 1.31421 1.22346 1.14740 1.04939 0.92350 0.88336 0.93373 0.93534 0.93127 0.92428 0.85627 0.85972 0.83762 0.81465 0.82035 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 8.83 101.05 0.89 1.24 16 2 O -0.34 -4.51 7.92 -40.96 -0.32 -4.83 16 3 C 0.11 1.43 0.26 -91.73 -0.02 1.41 16 4 C 0.52 9.57 5.34 -10.99 -0.06 9.51 16 5 O -0.51 -11.15 15.86 5.56 0.09 -11.06 16 6 N -0.58 -11.02 2.31 -175.06 -0.40 -11.42 16 7 C 0.24 5.69 5.10 -5.20 -0.03 5.66 16 8 C -0.54 -13.96 9.39 -34.44 -0.32 -14.29 16 9 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 10 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -25.11 13.29 55.43 0.74 -24.38 16 12 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 C 0.06 0.90 5.07 -4.04 -0.02 0.88 16 17 C 0.43 6.60 3.30 37.15 0.12 6.72 16 18 F -0.18 -3.12 15.66 2.25 0.04 -3.09 16 19 F -0.19 -2.60 17.32 2.25 0.04 -2.56 16 20 F -0.18 -2.72 12.04 2.25 0.03 -2.70 16 21 C -0.60 -6.11 6.01 37.18 0.22 -5.88 16 22 S 2.42 23.85 7.48 -107.50 -0.80 23.05 16 23 O -0.89 -10.92 17.64 -61.45 -1.08 -12.00 16 24 O -0.92 -11.42 18.18 -57.30 -1.04 -12.46 16 25 C -0.61 -6.65 6.69 37.18 0.25 -6.40 16 26 H 0.06 0.85 6.06 -51.93 -0.31 0.53 16 27 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.52 7.00 -51.92 -0.36 0.16 16 29 H 0.05 1.16 6.55 -51.93 -0.34 0.82 16 30 H 0.05 1.39 7.34 -51.93 -0.38 1.01 16 31 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.13 1.76 8.13 -51.93 -0.42 1.34 16 33 H 0.12 1.45 3.62 -51.93 -0.19 1.26 16 34 H 0.14 1.10 6.49 -51.93 -0.34 0.77 16 35 H 0.17 1.59 8.11 -51.93 -0.42 1.17 16 36 H 0.16 1.78 7.94 -51.93 -0.41 1.37 16 37 H 0.13 1.24 7.05 -51.93 -0.37 0.87 16 LS Contribution 326.57 15.07 4.92 4.92 Total: -1.00 -35.01 326.57 -5.41 -40.42 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -3.51 Total: 0.08 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 0.94 Total: 0.50 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.33 Total: -35.80 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -2.36 Total: -40.35 kcal Atomic # 9 Polarization: -8.45 SS G_CDS: 0.10 Total: -8.35 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 23.85 SS G_CDS: -0.80 Total: 23.05 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.01 -5.41 -40.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933809370.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -210.098 kcal (2) G-P(sol) polarization free energy of solvation -35.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds