Wall clock time and date at job start Wed Apr 1 2020 02:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00058 * 2 1 4 4 C 1.50702 * 112.52860 * 303.47986 * 3 2 1 5 5 O 1.21282 * 119.99763 * 109.18513 * 4 3 2 6 6 N 1.34773 * 120.00154 * 289.19093 * 4 3 2 7 7 C 1.46498 * 120.00253 * 186.50272 * 6 4 3 8 8 C 1.50692 * 109.47544 * 89.99749 * 7 6 4 9 9 H 1.07999 * 119.99754 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00450 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99904 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00269 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46969 * 89.99757 * 12 10 8 14 14 H 1.48497 * 109.47151 * 209.99537 * 12 10 8 15 15 H 1.48501 * 109.47122 * 329.99794 * 12 10 8 16 16 C 1.46503 * 119.99888 * 6.50126 * 6 4 3 17 17 C 1.52994 * 109.47569 * 99.14415 * 16 6 4 18 18 F 1.39896 * 109.47604 * 66.24313 * 17 16 6 19 19 F 1.39896 * 109.47523 * 186.24899 * 17 16 6 20 20 F 1.39910 * 109.46861 * 306.24714 * 17 16 6 21 21 C 1.53042 * 113.15234 * 173.67128 * 3 2 1 22 22 S 1.81432 * 89.89072 * 277.64160 * 21 3 2 23 23 O 1.42100 * 112.75264 * 79.52180 * 22 21 3 24 24 O 1.42101 * 112.75213 * 223.27480 * 22 21 3 25 25 C 1.53040 * 113.15585 * 73.29613 * 3 2 1 26 26 H 1.08997 * 109.46877 * 62.01274 * 1 2 3 27 27 H 1.08995 * 109.47397 * 182.01290 * 1 2 3 28 28 H 1.09008 * 109.46898 * 302.01467 * 1 2 3 29 29 H 1.09007 * 109.47432 * 210.00096 * 7 6 4 30 30 H 1.09000 * 109.46910 * 329.99674 * 7 6 4 31 31 H 0.96996 * 120.00298 * 180.02562 * 11 10 8 32 32 H 1.09001 * 109.47058 * 219.14071 * 16 6 4 33 33 H 1.08998 * 109.46888 * 339.13809 * 16 6 4 34 34 H 1.08999 * 113.14950 * 32.89667 * 21 3 2 35 35 H 1.09003 * 113.15175 * 162.38557 * 21 3 2 36 36 H 1.08997 * 113.15250 * 197.61499 * 25 3 2 37 37 H 1.09007 * 113.14696 * 327.09486 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5436 2.1452 -1.1611 5 8 0.7963 3.0813 -0.9707 6 7 1.9566 1.8561 -2.4109 7 6 1.6205 2.7530 -3.5194 8 6 2.7031 3.7901 -3.6725 9 1 3.5564 3.7816 -3.0105 10 6 2.6043 4.7497 -4.6575 11 7 1.5654 4.7596 -5.4640 12 14 3.9458 6.0356 -4.8468 13 1 4.9826 5.5350 -5.7848 14 1 3.3576 7.2895 -5.3824 15 1 4.5639 6.3046 -3.5235 16 6 2.7417 0.6447 -2.6611 17 6 1.8247 -0.4556 -3.1986 18 9 1.3451 -0.0881 -4.4604 19 9 2.5427 -1.6517 -3.3029 20 9 0.7472 -0.6333 -2.3239 21 6 3.5327 1.2862 0.1551 22 16 3.3441 1.1259 1.9525 23 8 3.0455 -0.2031 2.3573 24 8 4.2389 1.9599 2.6755 25 6 1.8856 2.0197 1.3477 26 1 -0.3633 0.4823 -0.9075 27 1 -0.3634 -1.0270 0.0361 28 1 -0.3633 0.5449 0.8714 29 1 1.5368 2.1765 -4.4408 30 1 0.6711 3.2467 -3.3122 31 1 1.4960 5.4345 -6.1572 32 1 3.5188 0.8604 -3.3944 33 1 3.2023 0.3118 -1.7310 34 1 3.9995 0.4159 -0.3060 35 1 4.0058 2.2215 -0.1443 36 1 2.0411 3.0963 1.2782 37 1 0.9726 1.7637 1.8855 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933809370.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:58 Heat of formation + Delta-G solvation = -277.699739 kcal Electronic energy + Delta-G solvation = -31227.317275 eV Core-core repulsion = 26297.535186 eV Total energy + Delta-G solvation = -4929.782090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.074 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.04079 -48.55914 -48.53784 -41.85787 -39.14574 -38.26401 -37.17205 -37.13775 -35.45837 -34.77411 -30.97036 -29.23787 -28.36697 -27.37963 -26.07092 -24.63219 -23.51630 -20.73502 -19.94893 -19.59297 -19.53645 -19.22582 -18.63347 -18.14699 -17.77401 -17.60570 -17.10894 -16.93050 -16.64183 -16.32570 -16.21391 -15.71111 -15.42770 -15.37736 -15.23639 -14.96425 -14.74892 -14.68118 -14.38188 -14.27297 -14.15686 -13.80910 -13.60782 -13.35580 -13.29902 -13.26626 -13.15738 -12.97462 -12.84569 -12.62556 -12.55956 -12.22271 -12.19719 -11.78119 -11.41947 -11.41476 -10.64737 -10.54344 -9.85545 -8.24504 -6.39230 -0.93301 0.88881 1.20001 1.40519 1.42578 1.51969 1.69901 1.97537 2.11179 2.38894 2.61251 2.84156 2.89193 2.97185 3.05598 3.08591 3.18296 3.49651 3.64406 3.91746 4.12835 4.18461 4.31738 4.37965 4.41432 4.65696 4.71300 4.82540 4.87852 5.15208 5.33771 5.64209 5.71123 5.98055 6.29609 6.69173 6.98319 7.32177 8.83932 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.010897 B = 0.005452 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.849461 B = 5134.581487 C = 6657.209699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.099 3.901 4 C 0.519 3.481 5 O -0.554 6.554 6 N -0.586 5.586 7 C 0.253 3.747 8 C -0.545 4.545 9 H 0.070 0.930 10 C 0.010 3.990 11 N -0.928 5.928 12 Si 0.967 3.033 13 H -0.266 1.266 14 H -0.288 1.288 15 H -0.265 1.265 16 C 0.057 3.943 17 C 0.432 3.568 18 F -0.195 7.195 19 F -0.175 7.175 20 F -0.178 7.178 21 C -0.602 4.602 22 S 2.479 3.521 23 O -0.910 6.910 24 O -0.940 6.940 25 C -0.614 4.614 26 H 0.030 0.970 27 H 0.121 0.879 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.005 0.995 31 H 0.267 0.733 32 H 0.137 0.863 33 H 0.158 0.842 34 H 0.175 0.825 35 H 0.178 0.822 36 H 0.160 0.840 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.301 -11.907 11.916 17.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C 0.053 3.947 4 C 0.304 3.696 5 O -0.431 6.431 6 N -0.317 5.317 7 C 0.133 3.867 8 C -0.584 4.584 9 H 0.088 0.912 10 C -0.190 4.190 11 N -0.567 5.567 12 Si 0.792 3.208 13 H -0.191 1.191 14 H -0.213 1.213 15 H -0.189 1.189 16 C -0.069 4.069 17 C 0.377 3.623 18 F -0.177 7.177 19 F -0.156 7.156 20 F -0.159 7.159 21 C -0.728 4.728 22 S 2.657 3.343 23 O -0.908 6.908 24 O -0.937 6.937 25 C -0.741 4.741 26 H 0.049 0.951 27 H 0.139 0.861 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.023 0.977 31 H 0.076 0.924 32 H 0.155 0.845 33 H 0.176 0.824 34 H 0.193 0.807 35 H 0.195 0.805 36 H 0.178 0.822 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.416 -11.931 12.848 18.081 hybrid contribution -0.962 1.324 -1.917 2.521 sum 3.455 -10.607 10.930 15.618 Atomic orbital electron populations 1.23130 0.78663 1.05027 1.00677 1.88020 1.22171 1.21013 1.94495 1.21300 0.94938 0.85406 0.93027 1.20781 0.80061 0.84743 0.84001 1.90693 1.35952 1.31992 1.84483 1.47946 1.52598 1.22576 1.08578 1.19050 0.95685 0.88397 0.83567 1.21699 1.07007 1.13409 1.16267 0.91194 1.25851 0.98187 0.99745 0.95170 1.70065 1.30702 1.36207 1.19735 0.85414 0.78777 0.77868 0.78774 1.19074 1.21338 1.18932 1.23246 0.93098 0.82581 1.07936 1.21473 0.81390 0.83808 0.75675 1.93188 1.89571 1.91427 1.43480 1.93174 1.77586 1.48807 1.96051 1.93190 1.58212 1.95812 1.68711 1.31422 0.96580 1.15201 1.29578 1.06579 0.76851 0.74642 0.76217 1.93706 1.83182 1.33749 1.80118 1.93634 1.61137 1.68728 1.70180 1.31541 1.24251 1.14735 1.03614 0.95088 0.86093 0.91830 0.94864 0.97736 0.92439 0.84507 0.82433 0.80729 0.80469 0.82227 0.83137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 8.83 113.37 1.00 1.48 16 2 O -0.34 -8.13 7.92 -143.51 -1.14 -9.27 16 3 C 0.10 2.50 0.26 -11.51 0.00 2.49 16 4 C 0.52 18.94 5.34 87.66 0.47 19.41 16 5 O -0.55 -25.15 15.86 -3.04 -0.05 -25.20 16 6 N -0.59 -22.28 2.31 -826.17 -1.90 -24.19 16 7 C 0.25 12.61 5.10 85.63 0.44 13.05 16 8 C -0.55 -28.52 9.39 25.60 0.24 -28.28 16 9 H 0.07 3.44 7.81 -2.91 -0.02 3.42 16 10 C 0.01 0.54 5.46 84.65 0.46 1.00 16 11 N -0.93 -53.85 13.29 21.45 0.28 -53.56 16 12 Si 0.97 41.98 29.54 68.60 2.03 44.01 16 13 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 14 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 15 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 16 C 0.06 1.61 5.07 86.38 0.44 2.04 16 17 C 0.43 12.77 3.30 71.98 0.24 13.01 16 18 F -0.19 -6.96 15.66 44.97 0.70 -6.26 16 19 F -0.17 -4.47 17.32 44.97 0.78 -3.70 16 20 F -0.18 -5.32 12.04 44.97 0.54 -4.78 16 21 C -0.60 -10.32 6.01 72.00 0.43 -9.88 16 22 S 2.48 41.51 7.48 -56.49 -0.42 41.09 16 23 O -0.91 -19.25 17.64 -123.91 -2.19 -21.43 16 24 O -0.94 -20.68 18.18 -127.88 -2.32 -23.00 16 25 C -0.61 -12.31 6.69 72.00 0.48 -11.83 16 26 H 0.03 0.90 6.06 -2.39 -0.01 0.88 16 27 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.06 1.28 7.00 -2.38 -0.02 1.26 16 29 H 0.03 1.73 6.55 -2.38 -0.02 1.71 16 30 H 0.00 0.26 7.34 -2.39 -0.02 0.25 16 31 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.14 3.57 8.13 -2.39 -0.02 3.55 16 33 H 0.16 3.22 3.62 -2.39 -0.01 3.21 16 34 H 0.18 1.86 6.49 -2.39 -0.02 1.85 16 35 H 0.18 2.80 8.11 -2.39 -0.02 2.78 16 36 H 0.16 3.33 7.94 -2.39 -0.02 3.31 16 37 H 0.15 2.47 7.05 -2.38 -0.02 2.45 16 Total: -1.00 -77.09 326.57 1.65 -75.44 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.15 Total: 8.36 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 4.20 Total: 2.49 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -1.62 Total: -77.75 kcal Atomic # 8 Polarization: -73.20 SS G_CDS: -5.70 Total: -78.90 kcal Atomic # 9 Polarization: -16.76 SS G_CDS: 2.02 Total: -14.74 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: 41.51 SS G_CDS: -0.42 Total: 41.09 kcal Total: -77.09 1.65 -75.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933809370.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.263 kcal (2) G-P(sol) polarization free energy of solvation -77.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -279.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -277.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds