Wall clock time and date at job start Wed Apr 1 2020 04:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.49670 * 2 1 4 4 C 1.53192 * 109.49195 * 239.93523 * 2 1 3 5 5 N 1.46931 * 108.77151 * 185.44585 * 4 2 1 6 6 C 1.36939 * 120.60829 * 233.58004 * 5 4 2 7 7 H 1.08002 * 119.99870 * 27.66432 * 6 5 4 8 8 C 1.38810 * 120.00054 * 207.65813 * 6 5 4 9 9 N 1.31619 * 120.00141 * 17.35606 * 8 6 5 10 10 Si 1.86803 * 119.99852 * 197.36050 * 8 6 5 11 11 H 1.48494 * 109.47187 * 60.00039 * 10 8 6 12 12 H 1.48505 * 109.46980 * 180.02562 * 10 8 6 13 13 H 1.48508 * 109.46784 * 299.99718 * 10 8 6 14 14 C 1.46929 * 118.76399 * 53.55643 * 5 4 2 15 15 C 1.53196 * 108.77651 * 306.41475 * 14 5 4 16 16 C 1.53039 * 109.31127 * 54.63342 * 15 14 5 17 17 H 1.09002 * 109.45140 * 58.64634 * 16 15 14 18 18 N 1.46496 * 109.45912 * 178.61449 * 16 15 14 19 19 C 1.34770 * 120.00345 * 275.06612 * 18 16 15 20 20 O 1.21716 * 120.00093 * 0.02562 * 19 18 16 21 21 C 1.46546 * 120.00370 * 179.97438 * 19 18 16 22 22 C 1.37961 * 126.22264 * 179.68985 * 21 19 18 23 23 C 1.39796 * 107.12709 * 179.90794 * 22 21 19 24 24 Cl 1.73600 * 126.06247 * 180.11518 * 23 22 21 25 25 C 1.35725 * 107.87593 * 0.36040 * 23 22 21 26 26 Cl 1.73595 * 125.58465 * 179.75168 * 25 23 22 27 27 N 1.35669 * 108.82811 * 359.77787 * 25 23 22 28 28 H 0.96996 * 125.69216 * 180.02562 * 27 25 23 29 29 H 1.09002 * 109.46803 * 300.00080 * 1 2 3 30 30 H 1.09004 * 109.47380 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47667 * 59.99335 * 1 2 3 32 32 H 1.08994 * 109.59007 * 305.20424 * 4 2 1 33 33 H 1.09006 * 109.58627 * 65.63076 * 4 2 1 34 34 H 0.97001 * 119.99897 * 179.97438 * 9 8 6 35 35 H 1.09004 * 109.59062 * 186.62829 * 14 5 4 36 36 H 1.09005 * 109.58586 * 66.20256 * 14 5 4 37 37 H 1.09003 * 109.49458 * 294.68031 * 15 14 5 38 38 H 1.08997 * 109.52186 * 174.59889 * 15 14 5 39 39 H 0.97005 * 119.99971 * 95.06834 * 18 16 15 40 40 H 1.07997 * 126.43449 * 0.03700 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7235 -1.2498 5 7 3.5044 -0.8295 -1.1695 6 6 4.2934 -0.3796 -2.1943 7 1 3.9466 0.4203 -2.8318 8 6 5.5391 -0.9514 -2.4139 9 7 5.8281 -2.1220 -1.8861 10 14 6.8053 -0.0595 -3.4583 11 1 7.1176 1.2551 -2.8423 12 1 8.0435 -0.8755 -3.5392 13 1 6.2611 0.1503 -4.8240 14 6 4.1052 -1.4268 0.0310 15 6 3.5708 -0.6948 1.2661 16 6 2.0408 -0.7229 1.2485 17 1 1.6969 -1.7571 1.2355 18 7 1.5266 -0.0525 2.4453 19 6 1.3985 -0.7374 3.5989 20 8 1.7105 -1.9129 3.6466 21 6 0.8847 -0.0666 4.7962 22 6 0.6964 -0.6423 6.0357 23 6 0.1951 0.3528 6.8800 24 17 -0.2140 0.1604 8.5561 25 6 0.0799 1.4947 6.1554 26 17 -0.5049 3.0158 6.7535 27 7 0.4960 1.2524 4.8871 28 1 0.5168 1.8996 4.1649 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 -0.8899 32 1 1.6051 -1.7212 -1.2986 33 1 1.7636 -0.1573 -2.1390 34 1 6.6984 -2.5218 -2.0398 35 1 5.1895 -1.3247 -0.0136 36 1 3.8374 -2.4820 0.0872 37 1 3.9160 0.3391 1.2539 38 1 3.9334 -1.1888 2.1675 39 1 1.2783 0.8845 2.4074 40 1 0.9002 -1.6684 6.3040 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942541246.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:58 Heat of formation + Delta-G solvation = -7.263353 kcal Electronic energy + Delta-G solvation = -25469.589358 eV Core-core repulsion = 21564.349220 eV Total energy + Delta-G solvation = -3905.240138 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.67719 -40.83264 -39.10496 -37.91303 -37.52286 -36.28061 -34.33192 -32.94223 -32.39405 -31.80707 -30.15138 -27.42278 -26.94051 -24.67400 -23.24990 -22.67275 -21.94828 -21.57125 -21.21256 -19.95131 -18.68951 -17.48724 -17.33055 -16.73142 -16.64545 -15.93299 -15.68378 -15.58592 -15.53471 -15.16534 -14.82600 -14.70991 -14.54168 -14.46306 -14.17179 -13.61236 -13.07793 -13.01494 -13.00273 -12.87407 -12.73735 -12.58159 -12.49401 -12.34574 -12.10343 -12.06076 -11.98294 -11.69875 -11.60354 -11.43071 -11.12882 -10.56778 -10.22690 -10.11642 -9.39783 -8.71703 -7.87731 -5.33491 0.01680 0.30544 1.01860 1.04856 1.47743 1.49960 1.56812 1.85748 2.12503 2.20146 2.51377 3.28010 3.57041 3.66624 3.70063 3.76721 4.01158 4.13885 4.20448 4.37173 4.45697 4.59645 4.70171 4.70842 4.84210 4.87910 4.98659 5.02193 5.08142 5.12324 5.21004 5.28767 5.38516 5.44810 5.51338 5.63574 5.70275 5.87345 6.37771 6.41418 7.03633 7.13141 7.84231 8.36272 9.19063 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.020910 B = 0.002280 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.758073 B =12276.900373 C =12489.228895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.100 4.100 3 H 0.082 0.918 4 C 0.149 3.851 5 N -0.609 5.609 6 C -0.262 4.262 7 H 0.073 0.927 8 C -0.053 4.053 9 N -0.937 5.937 10 Si 0.968 3.032 11 H -0.276 1.276 12 H -0.298 1.298 13 H -0.274 1.274 14 C 0.182 3.818 15 C -0.133 4.133 16 C 0.170 3.830 17 H 0.063 0.937 18 N -0.702 5.702 19 C 0.590 3.410 20 O -0.560 6.560 21 C -0.018 4.018 22 C -0.094 4.094 23 C -0.111 4.111 24 Cl -0.025 7.025 25 C 0.108 3.892 26 Cl 0.021 6.979 27 N -0.504 5.504 28 H 0.442 0.558 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.010 0.990 33 H 0.065 0.935 34 H 0.249 0.751 35 H 0.056 0.944 36 H -0.010 1.010 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.409 0.591 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.916 12.182 17.478 26.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.120 4.120 3 H 0.101 0.899 4 C 0.023 3.977 5 N -0.332 5.332 6 C -0.392 4.392 7 H 0.091 0.909 8 C -0.248 4.248 9 N -0.583 5.583 10 Si 0.796 3.204 11 H -0.202 1.202 12 H -0.224 1.224 13 H -0.199 1.199 14 C 0.055 3.945 15 C -0.173 4.173 16 C 0.066 3.934 17 H 0.081 0.919 18 N -0.352 5.352 19 C 0.377 3.623 20 O -0.439 6.439 21 C -0.132 4.132 22 C -0.121 4.121 23 C -0.146 4.146 24 Cl 0.003 6.997 25 C -0.038 4.038 26 Cl 0.049 6.951 27 N -0.107 5.107 28 H 0.285 0.715 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.028 0.972 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.008 0.992 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.246 0.754 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -15.625 11.473 17.474 26.098 hybrid contribution 0.948 0.606 -0.736 1.345 sum -14.677 12.079 16.738 25.327 Atomic orbital electron populations 1.21732 0.92664 1.02008 1.02884 1.21773 0.96848 0.99984 0.93418 0.89941 1.21090 0.83459 0.96849 0.96327 1.44344 1.01129 1.71412 1.16309 1.19513 0.98688 1.12188 1.08834 0.90914 1.25838 1.01925 0.96002 1.01043 1.70196 1.22059 1.16181 1.49891 0.85342 0.78273 0.77863 0.78969 1.20243 1.22449 1.19932 1.20480 0.97725 0.92159 0.84106 1.22339 0.95830 1.00984 0.98164 1.20743 0.92598 0.96532 0.83517 0.91857 1.45838 1.65366 1.14640 1.09368 1.17035 0.77517 0.85751 0.81977 1.90898 1.51628 1.16877 1.84463 1.20078 1.12851 0.84057 0.96211 1.21270 1.00889 1.00208 0.89738 1.19662 1.12880 0.93494 0.88578 1.98353 1.92418 1.97432 1.11456 1.20632 1.07071 0.90147 0.85931 1.98447 1.85938 1.25367 1.85310 1.41772 1.48887 1.10247 1.09762 0.71506 0.90977 0.93445 0.91111 0.97163 0.91638 0.94161 0.92588 0.99193 0.91883 0.93196 0.75420 0.81729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.02 71.98 0.65 -2.14 16 2 C -0.10 -2.81 2.46 -10.71 -0.03 -2.83 16 3 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 4 C 0.15 5.71 5.80 86.36 0.50 6.21 16 5 N -0.61 -29.66 3.00 -699.05 -2.09 -31.76 16 6 C -0.26 -13.99 9.58 84.03 0.81 -13.19 16 7 H 0.07 3.70 7.89 -2.91 -0.02 3.68 16 8 C -0.05 -2.92 4.91 84.86 0.42 -2.50 16 9 N -0.94 -55.82 11.19 21.65 0.24 -55.58 16 10 Si 0.97 44.19 29.59 68.60 2.03 46.22 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 12 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 13 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 14 C 0.18 8.89 5.31 86.36 0.46 9.35 16 15 C -0.13 -5.04 5.65 30.67 0.17 -4.86 16 16 C 0.17 5.27 1.88 45.02 0.08 5.36 16 17 H 0.06 2.32 7.58 -2.39 -0.02 2.30 16 18 N -0.70 -15.81 4.36 -446.50 -1.95 -17.75 16 19 C 0.59 15.36 7.75 86.41 0.67 16.03 16 20 O -0.56 -19.93 16.54 -4.40 -0.07 -20.01 16 21 C -0.02 -0.35 7.06 40.31 0.28 -0.07 16 22 C -0.09 -1.95 10.64 22.58 0.24 -1.71 16 23 C -0.11 -2.03 6.66 22.06 0.15 -1.88 16 24 Cl -0.03 -0.43 29.12 -2.72 -0.08 -0.51 16 25 C 0.11 1.63 7.75 83.52 0.65 2.28 16 26 Cl 0.02 0.26 29.13 -2.72 -0.08 0.18 16 27 N -0.50 -6.69 6.01 -174.51 -1.05 -7.74 16 28 H 0.44 3.00 8.19 -92.71 -0.76 2.24 16 29 H 0.07 1.11 7.36 -2.39 -0.02 1.10 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.07 2.40 7.93 -2.38 -0.02 2.39 16 34 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 35 H 0.06 3.11 6.04 -2.38 -0.01 3.10 16 36 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 37 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.41 5.95 7.43 -92.70 -0.69 5.26 16 40 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -68.74 360.50 1.65 -67.09 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -0.35 Total: 9.81 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 5.05 Total: 10.05 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -4.85 Total: -112.83 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.07 Total: -20.01 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -0.16 Total: -0.33 kcal Total: -68.74 1.65 -67.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942541246.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.826 kcal (2) G-P(sol) polarization free energy of solvation -68.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds