Wall clock time and date at job start Wed Apr 1 2020 04:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.49399 * 2 1 4 4 C 1.53622 * 109.43308 * 120.23058 * 2 1 3 5 5 N 1.46920 * 108.54182 * 174.72781 * 4 2 1 6 6 C 1.36938 * 120.63045 * 126.37020 * 5 4 2 7 7 H 1.07996 * 119.99786 * 332.17837 * 6 5 4 8 8 C 1.38810 * 119.99976 * 152.18367 * 6 5 4 9 9 N 1.31624 * 120.00152 * 342.36237 * 8 6 5 10 10 Si 1.86800 * 120.00264 * 162.63776 * 8 6 5 11 11 H 1.48505 * 109.46651 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47149 * 119.99724 * 10 8 6 13 13 H 1.48493 * 109.47510 * 240.00094 * 10 8 6 14 14 C 1.46929 * 118.73799 * 306.08918 * 5 4 2 15 15 C 1.53187 * 108.77314 * 53.86216 * 14 5 4 16 16 C 1.53036 * 109.31796 * 305.36619 * 15 14 5 17 17 H 1.08992 * 109.46346 * 181.37335 * 16 15 14 18 18 N 1.46501 * 109.45769 * 301.34455 * 16 15 14 19 19 C 1.34773 * 120.00115 * 274.99639 * 18 16 15 20 20 O 1.21713 * 120.00311 * 0.02562 * 19 18 16 21 21 C 1.46546 * 120.00067 * 179.97438 * 19 18 16 22 22 C 1.37957 * 126.22332 * 180.02562 * 21 19 18 23 23 C 1.39788 * 107.12767 * 180.02562 * 22 21 19 24 24 Cl 1.73602 * 126.06296 * 180.02562 * 23 22 21 25 25 C 1.35714 * 107.87909 * 359.97438 * 23 22 21 26 26 Cl 1.73606 * 125.58846 * 179.97438 * 25 23 22 27 27 N 1.35669 * 108.83122 * 359.73248 * 25 23 22 28 28 H 0.96994 * 125.69922 * 180.26061 * 27 25 23 29 29 H 1.09002 * 109.47122 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47382 * 300.05713 * 1 2 3 31 31 H 1.09003 * 109.47321 * 60.05662 * 1 2 3 32 32 H 1.09000 * 109.73931 * 54.98354 * 4 2 1 33 33 H 1.09004 * 109.66058 * 294.41613 * 4 2 1 34 34 H 0.96999 * 120.00120 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.58909 * 173.65261 * 14 5 4 36 36 H 1.08999 * 109.58577 * 293.93308 * 14 5 4 37 37 H 1.09004 * 109.49944 * 65.32101 * 15 14 5 38 38 H 1.09007 * 109.49877 * 185.37780 * 15 14 5 39 39 H 0.97007 * 119.99700 * 95.00231 * 18 16 15 40 40 H 1.08002 * 126.43616 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0411 -0.7294 1.2517 5 7 3.5046 -0.8295 1.1692 6 6 4.2936 -0.3801 2.1943 7 1 3.9458 0.4180 2.8333 8 6 5.5403 -0.9503 2.4119 9 7 5.8289 -2.1220 1.8863 10 14 6.8058 -0.0582 3.4569 11 1 6.2369 1.2286 3.9321 12 1 7.1668 -0.9017 4.6246 13 1 8.0199 0.2079 2.6444 14 6 4.1053 -1.4266 -0.0314 15 6 3.5708 -0.6945 -1.2663 16 6 2.0408 -0.7226 -1.2487 17 1 1.6582 -0.2235 -2.1389 18 7 1.5784 -2.1126 -1.2317 19 6 1.4489 -2.7939 -2.3873 20 8 1.7166 -2.2546 -3.4450 21 6 0.9868 -4.1845 -2.3702 22 6 0.8094 -4.9982 -3.4700 23 6 0.3597 -6.2350 -2.9989 24 17 -0.0183 -7.6229 -3.9708 25 6 0.2719 -6.1589 -1.6467 26 17 -0.2419 -7.4401 -0.5939 27 7 0.6566 -4.9192 -1.2520 28 1 0.6904 -4.6019 -0.3360 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5147 0.8894 31 1 -0.3634 0.5130 -0.8905 32 1 1.6085 -1.7288 1.2978 33 1 1.7630 -0.1670 2.1431 34 1 6.7002 -2.5203 2.0381 35 1 5.1896 -1.3245 0.0131 36 1 3.8397 -2.4823 -0.0864 37 1 3.9159 0.3394 -1.2541 38 1 3.9339 -1.1885 -2.1676 39 1 1.3653 -2.5425 -0.3886 40 1 0.9850 -4.7299 -4.5014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942541248.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:05 Heat of formation + Delta-G solvation = -3.729408 kcal Electronic energy + Delta-G solvation = -26087.185139 eV Core-core repulsion = 22182.098244 eV Total energy + Delta-G solvation = -3905.086895 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.67461 -40.95853 -39.04619 -37.91067 -37.52443 -36.05406 -34.12066 -32.89970 -32.37834 -31.88481 -30.12212 -27.40310 -27.05256 -24.63212 -23.55018 -22.71744 -22.07394 -21.58247 -20.37645 -20.12664 -18.67325 -17.60105 -16.92740 -16.74282 -16.54902 -15.93197 -15.83077 -15.74547 -15.35990 -15.25286 -14.79666 -14.73907 -14.54765 -14.45689 -14.16889 -13.55899 -13.17421 -13.00700 -12.98984 -12.87506 -12.72464 -12.55330 -12.50139 -12.39456 -12.16364 -11.98490 -11.96388 -11.69734 -11.50929 -11.30001 -11.10213 -10.54421 -10.22248 -10.10873 -9.39172 -8.68013 -7.88106 -5.32379 0.03598 0.32094 1.00405 1.06130 1.44853 1.48825 1.57297 1.91275 2.15922 2.21939 2.50553 3.27556 3.58681 3.67740 3.70942 3.81140 4.05774 4.11395 4.21706 4.41087 4.46535 4.56542 4.64931 4.75854 4.79509 4.95050 5.00608 5.03180 5.08545 5.14658 5.23635 5.31121 5.41469 5.47285 5.54136 5.64716 5.73703 5.82506 6.37877 6.40810 7.02237 7.14225 7.85909 8.35832 9.17232 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.013530 B = 0.003036 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.004632 B = 9221.285504 C =10006.201663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 H 0.080 0.920 4 C 0.149 3.851 5 N -0.607 5.607 6 C -0.258 4.258 7 H 0.068 0.932 8 C -0.048 4.048 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.266 1.266 12 H -0.294 1.294 13 H -0.295 1.295 14 C 0.187 3.813 15 C -0.144 4.144 16 C 0.168 3.832 17 H 0.085 0.915 18 N -0.701 5.701 19 C 0.592 3.408 20 O -0.557 6.557 21 C -0.022 4.022 22 C -0.091 4.091 23 C -0.109 4.109 24 Cl -0.023 7.023 25 C 0.104 3.896 26 Cl 0.017 6.983 27 N -0.510 5.510 28 H 0.437 0.563 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.023 0.977 33 H 0.059 0.941 34 H 0.247 0.753 35 H 0.046 0.954 36 H 0.001 0.999 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.402 0.598 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.646 -6.550 -7.031 18.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 H 0.099 0.901 4 C 0.023 3.977 5 N -0.330 5.330 6 C -0.388 4.388 7 H 0.086 0.914 8 C -0.243 4.243 9 N -0.578 5.578 10 Si 0.788 3.212 11 H -0.190 1.190 12 H -0.221 1.221 13 H -0.222 1.222 14 C 0.061 3.939 15 C -0.184 4.184 16 C 0.064 3.936 17 H 0.103 0.897 18 N -0.351 5.351 19 C 0.379 3.621 20 O -0.436 6.436 21 C -0.136 4.136 22 C -0.117 4.117 23 C -0.143 4.143 24 Cl 0.006 6.994 25 C -0.042 4.042 26 Cl 0.046 6.954 27 N -0.112 5.112 28 H 0.279 0.721 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.019 0.981 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.238 0.762 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -15.374 -6.343 -7.546 18.263 hybrid contribution 1.126 -0.211 1.467 1.861 sum -14.248 -6.554 -6.079 16.820 Atomic orbital electron populations 1.21709 0.92730 1.02211 1.02558 1.21895 0.96842 0.99856 0.94137 0.90134 1.21181 0.83384 0.96905 0.96186 1.44286 1.01064 1.71567 1.16054 1.19510 0.98644 1.12108 1.08543 0.91388 1.25689 1.01668 0.96047 1.00933 1.70173 1.21743 1.15948 1.49906 0.85328 0.79336 0.78550 0.77947 1.19023 1.22120 1.22203 1.20411 0.97206 0.92442 0.83859 1.22408 0.96297 1.01259 0.98483 1.20843 0.92988 0.80636 0.99116 0.89687 1.45910 1.66573 1.14429 1.08214 1.16945 0.77247 0.83702 0.84202 1.90837 1.52333 1.69031 1.31397 1.20261 1.13686 0.93347 0.86339 1.21261 1.01107 0.89946 0.99425 1.19636 1.13392 0.92171 0.89146 1.98346 1.93147 1.38713 1.69192 1.20691 1.08041 0.85085 0.90356 1.98439 1.88460 1.43643 1.64877 1.41885 1.50282 1.09005 1.10001 0.72080 0.92432 0.91352 0.91959 0.95950 0.92233 0.94341 0.93575 0.98087 0.91725 0.93105 0.76212 0.81110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.05 71.98 0.65 -2.10 16 2 C -0.11 -2.96 2.69 -10.57 -0.03 -2.99 16 3 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 4 C 0.15 5.13 5.53 86.51 0.48 5.61 16 5 N -0.61 -27.54 2.99 -698.28 -2.09 -29.63 16 6 C -0.26 -13.29 9.59 84.03 0.81 -12.48 16 7 H 0.07 3.42 7.89 -2.91 -0.02 3.40 16 8 C -0.05 -2.56 4.90 84.86 0.42 -2.15 16 9 N -0.93 -53.19 11.20 21.65 0.24 -52.94 16 10 Si 0.96 43.59 29.59 68.60 2.03 45.62 16 11 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 12 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 13 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 14 C 0.19 8.49 5.05 86.36 0.44 8.93 16 15 C -0.14 -5.37 5.77 30.67 0.18 -5.19 16 16 C 0.17 5.07 2.21 45.02 0.10 5.16 16 17 H 0.09 2.53 7.57 -2.39 -0.02 2.52 16 18 N -0.70 -19.16 3.60 -446.51 -1.61 -20.77 16 19 C 0.59 17.19 7.75 86.41 0.67 17.86 16 20 O -0.56 -19.59 16.54 -4.39 -0.07 -19.67 16 21 C -0.02 -0.54 7.06 40.30 0.28 -0.26 16 22 C -0.09 -2.15 10.64 22.58 0.24 -1.91 16 23 C -0.11 -2.38 6.66 22.06 0.15 -2.23 16 24 Cl -0.02 -0.45 29.12 -2.72 -0.08 -0.52 16 25 C 0.10 2.13 7.75 83.51 0.65 2.78 16 26 Cl 0.02 0.31 29.13 -2.72 -0.08 0.23 16 27 N -0.51 -10.30 6.01 -174.51 -1.05 -11.35 16 28 H 0.44 7.15 8.19 -92.71 -0.76 6.39 16 29 H 0.06 1.09 7.54 -2.39 -0.02 1.07 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.02 0.73 6.63 -2.39 -0.02 0.71 16 33 H 0.06 2.04 7.93 -2.39 -0.02 2.03 16 34 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 35 H 0.05 2.48 6.03 -2.39 -0.01 2.47 16 36 H 0.00 0.05 7.74 -2.39 -0.02 0.03 16 37 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 38 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.40 9.92 5.85 -92.70 -0.54 9.38 16 40 H 0.17 3.80 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -62.56 356.58 2.13 -60.44 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -0.20 Total: 17.56 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 5.02 Total: 11.03 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -4.50 Total: -114.69 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.07 Total: -19.67 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.16 Total: -0.30 kcal Total: -62.56 2.13 -60.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942541248.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.707 kcal (2) G-P(sol) polarization free energy of solvation -62.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds